HEADER DNA BINDING PROTEIN 25-MAY-09 2KJ9 TITLE NMR STRUCTURE OF INTB PHAGE-INTEGRASE-LIKE PROTEIN FRAGMENT 90-199 TITLE 2 FROM ERWINIA CAROTOVA SUBSP. ATROSEPTICA: NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET EWR217E COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM; SOURCE 3 ORGANISM_TAXID: 29471; SOURCE 4 VARIANT: SUBSP. ATROSEPTICA; SOURCE 5 GENE: ECA2889, INTB, INTB/ECA2889; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS INTEGRASE, DNA_BRE_C SUPERFAMILY, BACTERIOPHAGE P4 INTEGRASE, INTB, KEYWDS 2 INTEGRASE-LIKE_CAT-CORE_PHAGE, PSI-2, STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 4 NESG, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,D.WANG,C.CICCOSANTI,H.JANJUA,R.NAIR,B.ROST, AUTHOR 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KJ9 1 REMARK REVDAT 2 26-FEB-20 2KJ9 1 REMARK SEQADV REVDAT 1 07-JUL-09 2KJ9 0 JRNL AUTH J.R.CORT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF INTB PHAGE-INTEGRASE-LIKE PROTEIN FRAGMENT JRNL TITL 2 90-199 FROM ERWINIA CAROTOVA SUBSP. ATROSEPTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, X-PLOR NIH, CNS REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101188. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 215 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 W/V SODIUM AZIDE, REMARK 210 95 % H2O, 5 % [U-99% 2H] D2O, 95% REMARK 210 H2O/5% D2O; 0.7 MM [5% REMARK 210 BIOSYNTHETICALLY DIRECTED 13C; U- REMARK 210 99% 15N] PROTEIN, 20 MM MES, 200 REMARK 210 MM SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 W/V SODIUM AZIDE, REMARK 210 95 % H2O, 5 % [U-99% 2H] D2O, 95% REMARK 210 H2O/5% D2O; 0.7 MM [U-99% 13C; REMARK 210 U-99% 15N] PROTEIN, 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 0.02 W/V REMARK 210 SODIUM AZIDE, 100 % [U-99% 2H] REMARK 210 D2O-20, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D HNHA; 2D REMARK 210 1H-15N HSQC; 2D 1H-13C HSQC; 4D REMARK 210 1H-13C-13C-1H HMQC-NOESY-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FELIX REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOW ENERGIES AND REMARK 210 FEW RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLU A 5 22.88 -77.45 REMARK 500 3 ILE A 52 -44.08 73.19 REMARK 500 3 LEU A 111 56.73 -113.75 REMARK 500 4 ARG A 11 34.18 -95.89 REMARK 500 4 ILE A 52 -47.40 73.03 REMARK 500 4 TYR A 72 79.63 -100.06 REMARK 500 4 GLU A 105 -56.40 66.29 REMARK 500 5 ARG A 11 35.94 -77.26 REMARK 500 5 PHE A 98 165.71 70.77 REMARK 500 5 ASP A 103 97.94 63.57 REMARK 500 5 ALA A 107 -164.12 63.30 REMARK 500 6 TYR A 42 -61.38 -96.65 REMARK 500 6 ARG A 97 -61.18 72.25 REMARK 500 6 GLN A 109 86.13 61.04 REMARK 500 6 HIS A 116 -8.62 -140.25 REMARK 500 7 LEU A 43 55.78 -101.13 REMARK 500 7 PHE A 44 -48.19 -144.43 REMARK 500 7 ILE A 52 -42.79 72.50 REMARK 500 7 GLU A 105 -83.73 65.30 REMARK 500 8 ASN A 8 71.03 59.08 REMARK 500 8 THR A 25 49.97 -84.91 REMARK 500 8 PHE A 44 -49.40 -132.95 REMARK 500 8 ASN A 49 25.42 46.32 REMARK 500 8 ASP A 51 -124.32 63.17 REMARK 500 8 ILE A 52 -32.03 -175.40 REMARK 500 8 LEU A 55 95.02 -67.56 REMARK 500 8 GLU A 105 -58.77 72.59 REMARK 500 9 PHE A 44 -38.72 101.84 REMARK 500 9 ASP A 46 -70.02 -88.92 REMARK 500 9 HIS A 116 -76.68 67.73 REMARK 500 9 HIS A 117 -29.12 175.31 REMARK 500 10 MET A 95 -71.92 -90.61 REMARK 500 10 ASP A 103 106.02 -167.98 REMARK 500 10 GLU A 105 -61.43 66.39 REMARK 500 10 ALA A 107 -61.90 -90.79 REMARK 500 11 THR A 25 18.72 -140.77 REMARK 500 11 ILE A 52 -44.30 69.34 REMARK 500 11 GLU A 105 -61.70 67.63 REMARK 500 12 ASN A 8 85.87 61.89 REMARK 500 12 ASP A 46 -64.49 -101.97 REMARK 500 12 ILE A 52 -42.70 72.78 REMARK 500 12 ARG A 97 -64.64 70.48 REMARK 500 13 GLN A 4 -80.38 -64.88 REMARK 500 13 ASP A 46 -61.02 -97.81 REMARK 500 13 ILE A 52 -43.65 71.11 REMARK 500 13 HIS A 114 -28.34 -175.51 REMARK 500 14 GLU A 5 -153.45 57.02 REMARK 500 14 ARG A 11 21.01 -150.42 REMARK 500 14 ASP A 46 -73.39 -113.77 REMARK 500 14 ASN A 49 -32.90 173.30 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EWR217E RELATED DB: TARGETDB REMARK 900 RELATED ID: 16316 RELATED DB: BMRB DBREF 2KJ9 A 1 110 UNP Q6D355 Q6D355_ERWCT 90 199 SEQADV 2KJ9 LEU A 111 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 GLU A 112 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 113 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 114 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 115 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 116 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 117 UNP Q6D355 EXPRESSION TAG SEQADV 2KJ9 HIS A 118 UNP Q6D355 EXPRESSION TAG SEQRES 1 A 118 LYS SER VAL GLN GLU LYS ARG ASN ASN THR ARG ALA PHE SEQRES 2 A 118 LYS THR VAL ALA LYS SER TRP PHE ALA THR LYS THR THR SEQRES 3 A 118 TRP SER GLU ASP TYR GLN ARG SER VAL TRP THR ARG LEU SEQRES 4 A 118 GLU THR TYR LEU PHE PRO ASP ILE GLY ASN LYS ASP ILE SEQRES 5 A 118 ALA GLU LEU ASP THR GLY ASP LEU LEU VAL PRO ILE LYS SEQRES 6 A 118 LYS ILE GLU LYS LEU GLY TYR LEU GLU ILE ALA MET ARG SEQRES 7 A 118 VAL LYS GLN TYR ALA THR ALA ILE MET ARG TYR ALA VAL SEQRES 8 A 118 GLN GLN LYS MET ILE ARG PHE ASN PRO ALA TYR ASP LEU SEQRES 9 A 118 GLU GLY ALA VAL GLN LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 10 A 118 HIS HELIX 1 1 ALA A 12 THR A 23 1 12 HELIX 2 2 SER A 28 TYR A 42 1 15 HELIX 3 3 ASP A 46 LYS A 50 5 5 HELIX 4 4 ASP A 51 LEU A 55 5 5 HELIX 5 5 ASP A 56 LYS A 69 1 14 HELIX 6 6 TYR A 72 GLN A 93 1 22 HELIX 7 7 ASN A 99 LEU A 104 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1