HEADER TRANSCRIPTION 27-MAY-09 2KJE TITLE NMR STRUCTURE OF CBP TAZ2 AND ADENOVIRAL E1A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1763-1854; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EARLY E1A 32 KDA PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 53-91; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CREBBP, CBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 12 ORGANISM_COMMON: ADENOVIRUS; SOURCE 13 ORGANISM_TAXID: 28285; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS CBP, TAZ2, E1A, ADENOVIRAL, ACETYLATION, ACTIVATOR, BROMODOMAIN, KEYWDS 2 CHROMOSOMAL REARRANGEMENT, DISEASE MUTATION, HOST-VIRUS INTERACTION, KEYWDS 3 ISOPEPTIDE BOND, METAL-BINDING, METHYLATION, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 5 TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, ALTERNATIVE KEYWDS 6 SPLICING, DNA-BINDING, EARLY PROTEIN, ONCOGENE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.C.FERREON,M.MARTINEZ-YAMOUT,H.DYSON,P.E.WRIGHT REVDAT 2 16-MAR-22 2KJE 1 REMARK SEQADV LINK REVDAT 1 15-SEP-09 2KJE 0 JRNL AUTH J.C.FERREON,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT JRNL TITL STRUCTURAL BASIS FOR SUBVERSION OF CELLULAR CONTROL JRNL TITL 2 MECHANISMS BY THE ADENOVIRAL E1A ONCOPROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 13260 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19651603 JRNL DOI 10.1073/PNAS.0906770106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM (AMBER), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, ... REMARK 3 AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101193. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-1.5 MM [U-100% 13C; U-100% REMARK 210 15N] TRIS-1, 1-1.5 MM [U-100% REMARK 210 15N] TRIS-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A1769 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A1775 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A1769 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG A1811 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 ARG A1770 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG A1775 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A1769 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 15 ARG A1775 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A1811 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A1811 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A1852 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 ARG A1775 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A1811 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A1852 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A1787 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A1811 -60.97 -106.89 REMARK 500 1 LYS A1812 -166.39 46.08 REMARK 500 1 GLN A1835 -3.17 -153.16 REMARK 500 2 LYS A1812 -174.17 54.05 REMARK 500 2 PRO B 54 -96.40 -75.17 REMARK 500 2 MET B 71 33.01 -73.65 REMARK 500 3 ARG A1811 -32.23 -135.21 REMARK 500 3 LYS A1812 -168.14 53.61 REMARK 500 3 GLN A1835 -4.25 -149.05 REMARK 500 4 LYS A1812 -170.47 49.07 REMARK 500 4 GLN A1835 -5.20 -149.79 REMARK 500 4 PRO B 54 -112.92 -79.48 REMARK 500 4 ASP B 79 0.65 -61.45 REMARK 500 5 LYS A1812 179.92 58.14 REMARK 500 5 GLN A1835 -2.97 -144.82 REMARK 500 5 ASP B 79 31.15 -69.37 REMARK 500 6 LYS A1812 -175.31 54.91 REMARK 500 6 GLN A1835 -2.71 -147.91 REMARK 500 7 LYS A1812 -175.65 54.16 REMARK 500 7 GLN A1835 -2.95 -155.87 REMARK 500 7 PRO B 85 101.40 -31.60 REMARK 500 7 SER B 89 107.71 -56.66 REMARK 500 9 LYS A1812 -175.69 54.40 REMARK 500 9 PRO B 54 -119.97 -80.72 REMARK 500 9 ALA B 86 80.36 0.15 REMARK 500 10 LYS A1812 -173.78 52.98 REMARK 500 10 GLN A1835 -5.84 -149.02 REMARK 500 10 PRO B 54 -93.16 -77.23 REMARK 500 10 LEU B 81 -18.92 -47.62 REMARK 500 11 LYS A1812 -176.55 53.80 REMARK 500 11 GLN A1835 -0.03 -148.59 REMARK 500 11 PRO B 54 -88.11 -73.91 REMARK 500 11 LEU B 80 -7.34 -57.96 REMARK 500 12 LYS A1812 -168.56 52.78 REMARK 500 12 GLN A1835 -4.19 -148.16 REMARK 500 12 PRO B 54 -119.62 -82.55 REMARK 500 13 LYS A1812 -159.85 48.93 REMARK 500 14 ARG A1811 -33.04 -130.30 REMARK 500 14 LYS A1812 -161.74 51.90 REMARK 500 14 GLN A1835 -6.65 -151.59 REMARK 500 15 CYS A1791 108.66 -40.86 REMARK 500 15 LYS A1812 -171.88 53.52 REMARK 500 15 GLN A1835 -3.80 -142.64 REMARK 500 15 PRO B 54 -77.48 -70.48 REMARK 500 15 ASP B 79 45.71 -72.41 REMARK 500 16 ARG A1811 -26.62 -140.61 REMARK 500 16 LYS A1812 -163.06 50.58 REMARK 500 16 PRO B 54 -89.45 -77.46 REMARK 500 17 ARG A1811 -59.58 -120.08 REMARK 500 17 LYS A1812 -164.89 56.72 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1782 NE2 REMARK 620 2 CYS A1786 SG 105.5 REMARK 620 3 CYS A1791 SG 115.7 105.2 REMARK 620 4 CYS A1796 SG 107.7 112.4 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1805 NE2 REMARK 620 2 CYS A1809 SG 108.7 REMARK 620 3 CYS A1817 SG 109.2 107.3 REMARK 620 4 CYS A1820 SG 112.6 110.2 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1830 NE2 REMARK 620 2 CYS A1834 SG 106.3 REMARK 620 3 CYS A1839 SG 109.0 110.5 REMARK 620 4 CYS A1844 SG 110.9 110.5 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 DBREF 2KJE A 1764 1855 UNP Q92793 CBP_HUMAN 1763 1854 DBREF 2KJE B 53 91 UNP P03255 E1A_ADE05 53 91 SEQADV 2KJE SER B 50 UNP P03255 EXPRESSION TAG SEQADV 2KJE HIS B 51 UNP P03255 EXPRESSION TAG SEQADV 2KJE MET B 52 UNP P03255 EXPRESSION TAG SEQRES 1 A 92 SER PRO GLN GLU SER ARG ARG LEU SER ILE GLN ARG CYS SEQRES 2 A 92 ILE GLN SER LEU VAL HIS ALA CYS GLN CYS ARG ASN ALA SEQRES 3 A 92 ASN CYS SER LEU PRO SER CYS GLN LYS MET LYS ARG VAL SEQRES 4 A 92 VAL GLN HIS THR LYS GLY CYS LYS ARG LYS THR ASN GLY SEQRES 5 A 92 GLY CYS PRO VAL CYS LYS GLN LEU ILE ALA LEU CYS CYS SEQRES 6 A 92 TYR HIS ALA LYS HIS CYS GLN GLU ASN LYS CYS PRO VAL SEQRES 7 A 92 PRO PHE CYS LEU ASN ILE LYS HIS LYS LEU ARG GLN GLN SEQRES 8 A 92 GLN SEQRES 1 B 42 SER HIS MET ALA PRO GLU ASP PRO ASN GLU GLU ALA VAL SEQRES 2 B 42 SER GLN ILE PHE PRO ASP SER VAL MET LEU ALA VAL GLN SEQRES 3 B 42 GLU GLY ILE ASP LEU LEU THR PHE PRO PRO ALA PRO GLY SEQRES 4 B 42 SER PRO GLU HET ZN A 500 1 HET ZN A 501 1 HET ZN A 502 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) HELIX 1 1 PRO A 1765 CYS A 1786 1 22 HELIX 2 2 LEU A 1793 LYS A 1807 1 15 HELIX 3 3 CYS A 1817 CYS A 1834 1 18 HELIX 4 4 VAL A 1841 GLN A 1855 1 15 HELIX 5 5 ASN B 58 GLN B 64 1 7 HELIX 6 6 MET B 71 GLN B 75 5 5 HELIX 7 7 ASP B 79 PHE B 83 5 5 LINK ZN ZN A 500 NE2 HIS A1782 1555 1555 2.08 LINK ZN ZN A 500 SG CYS A1786 1555 1555 2.27 LINK ZN ZN A 500 SG CYS A1791 1555 1555 2.28 LINK ZN ZN A 500 SG CYS A1796 1555 1555 2.28 LINK ZN ZN A 501 NE2 HIS A1805 1555 1555 2.08 LINK ZN ZN A 501 SG CYS A1809 1555 1555 2.27 LINK ZN ZN A 501 SG CYS A1817 1555 1555 2.27 LINK ZN ZN A 501 SG CYS A1820 1555 1555 2.28 LINK ZN ZN A 502 NE2 HIS A1830 1555 1555 2.07 LINK ZN ZN A 502 SG CYS A1834 1555 1555 2.28 LINK ZN ZN A 502 SG CYS A1839 1555 1555 2.27 LINK ZN ZN A 502 SG CYS A1844 1555 1555 2.28 SITE 1 AC1 4 HIS A1782 CYS A1786 CYS A1791 CYS A1796 SITE 1 AC2 4 HIS A1805 CYS A1809 CYS A1817 CYS A1820 SITE 1 AC3 4 HIS A1830 CYS A1834 CYS A1839 CYS A1844 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1