HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JUN-09 2KJP TITLE SOLUTION STRUCTURE OF PROTEIN YLBL (BSU15050) FROM BACILLUS SUBTILIS, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR713A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YLBL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 128-210; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YLBL, BSU15050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS MIXED ALPHA-BETA PROTEIN, CELL MEMBRANE, HYDROLASE, MEMBRANE, KEYWDS 2 PROTEASE, SERINE PROTEASE, TRANSMEMBRANE, STRUCTURAL GENOMICS, PSI- KEYWDS 3 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR Y.LIU,R.BELOTE,C.CICCOSANTI,K.HAMILTON,R.NAIR,B.ROST,T.ACTON,R.XIAO, AUTHOR 2 G.SWAPNA,J.EVERETT,G.T.MONTELIONE,J.PRESTEGARD,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 2 26-FEB-20 2KJP 1 REMARK SEQADV REVDAT 1 25-AUG-09 2KJP 0 JRNL AUTH Y.LIU,R.BELOTE,C.CICCOSANTI,K.HAMILTON,R.NAIR,B.ROST, JRNL AUTH 2 T.ACTON,R.XIAO,G.SWAPNA,J.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 J.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF PROTEIN YLBL (BSU15050) FROM BACILLUS JRNL TITL 2 SUBTILIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 SR713A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMR), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PSEUDO ATOMS LABELED ANI ARE REMARK 3 INCLUDED IN THE CONSTRAINT FILE. THESE DEFINE AN ALIGNMENT FRAME REMARK 3 USED IN THE STRUCTURAL INTERPRETATION OF RDC DATA. REMARK 4 REMARK 4 2KJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM DTT, 3 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 5 MM DTT, 3 MM SODIUM REMARK 210 AZIDE, 100% D2O; 0.5 MM [U-99% REMARK 210 15N] PROTEIN, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM DTT, 3 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; REMARK 210 TROSY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 90 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -33.27 -164.85 REMARK 500 1 SER A 7 127.35 -170.97 REMARK 500 1 GLU A 10 -126.21 -86.48 REMARK 500 1 ALA A 14 12.01 46.09 REMARK 500 1 VAL A 20 60.93 -160.86 REMARK 500 1 SER A 43 28.89 47.90 REMARK 500 1 SER A 44 91.49 71.31 REMARK 500 1 LYS A 45 41.65 -143.10 REMARK 500 1 ALA A 47 95.21 71.50 REMARK 500 1 PHE A 71 103.87 -39.03 REMARK 500 1 GLU A 74 66.63 -166.99 REMARK 500 1 VAL A 82 99.85 55.74 REMARK 500 1 SER A 83 11.26 -141.31 REMARK 500 1 HIS A 88 87.08 -69.82 REMARK 500 1 HIS A 90 -49.58 -168.13 REMARK 500 2 GLU A 10 81.18 -68.83 REMARK 500 2 ASN A 11 18.37 -161.72 REMARK 500 2 PRO A 13 -3.18 -52.50 REMARK 500 2 ALA A 14 -44.05 3.11 REMARK 500 2 VAL A 20 89.01 -174.66 REMARK 500 2 ALA A 47 95.28 65.51 REMARK 500 2 GLU A 59 31.85 71.44 REMARK 500 2 LEU A 68 -178.91 -65.01 REMARK 500 2 VAL A 82 100.21 55.15 REMARK 500 2 SER A 83 95.07 -62.86 REMARK 500 2 LEU A 84 -125.82 56.10 REMARK 500 2 GLU A 85 -84.56 56.10 REMARK 500 3 GLU A 10 152.67 -41.48 REMARK 500 3 ASN A 11 -148.39 80.59 REMARK 500 3 MET A 12 153.49 79.44 REMARK 500 3 PRO A 13 -10.31 -48.79 REMARK 500 3 ALA A 14 -67.66 25.70 REMARK 500 3 VAL A 20 73.05 -160.10 REMARK 500 3 SER A 43 26.31 45.09 REMARK 500 3 SER A 44 91.01 77.56 REMARK 500 3 LYS A 45 39.51 -140.36 REMARK 500 3 ALA A 47 101.94 67.99 REMARK 500 3 GLU A 59 -0.42 70.43 REMARK 500 3 GLU A 74 64.65 -150.39 REMARK 500 3 GLU A 85 93.44 -63.93 REMARK 500 3 HIS A 86 -175.53 54.18 REMARK 500 3 HIS A 87 -174.26 -63.64 REMARK 500 3 HIS A 90 78.96 52.66 REMARK 500 4 SER A 6 -45.45 -146.16 REMARK 500 4 SER A 7 140.16 -171.74 REMARK 500 4 GLU A 10 -136.83 -83.54 REMARK 500 4 ALA A 14 20.17 45.50 REMARK 500 4 VAL A 20 58.18 -159.45 REMARK 500 4 LYS A 45 109.64 -59.19 REMARK 500 4 ASP A 49 178.09 -52.01 REMARK 500 REMARK 500 THIS ENTRY HAS 245 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR713A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16335 RELATED DB: BMRB DBREF 2KJP A 1 83 UNP O34470 YLBL_BACSU 128 210 SEQADV 2KJP LEU A 84 UNP O34470 EXPRESSION TAG SEQADV 2KJP GLU A 85 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 86 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 87 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 88 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 89 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 90 UNP O34470 EXPRESSION TAG SEQADV 2KJP HIS A 91 UNP O34470 EXPRESSION TAG SEQRES 1 A 91 ASN GLY ILE TYR ALA SER SER VAL VAL GLU ASN MET PRO SEQRES 2 A 91 ALA LYS GLY LYS ILE GLU VAL GLY ASP LYS ILE ILE SER SEQRES 3 A 91 ALA ASP GLY LYS ASN TYR GLN SER ALA GLU LYS LEU ILE SEQRES 4 A 91 ASP TYR ILE SER SER LYS LYS ALA GLY ASP LYS VAL THR SEQRES 5 A 91 LEU LYS ILE GLU ARG GLU GLU LYS GLU LYS ARG VAL THR SEQRES 6 A 91 LEU THR LEU LYS GLN PHE PRO ASP GLU PRO ASP ARG ALA SEQRES 7 A 91 GLY ILE GLY VAL SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 34 SER A 43 1 10 SHEET 1 A 3 LYS A 23 ALA A 27 0 SHEET 2 A 3 LEU A 53 GLU A 56 -1 O LYS A 54 N SER A 26 SHEET 3 A 3 GLU A 61 LYS A 62 -1 O LYS A 62 N ILE A 55 SHEET 1 B 2 LYS A 50 VAL A 51 0 SHEET 2 B 2 LEU A 66 THR A 67 -1 O LEU A 66 N VAL A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1