HEADER CHAPERONE 08-JUN-09 2KJR TITLE SOLUTION NMR STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN FROM TITLE 2 TUBULIN-BINDING COFACTOR B, CG11242, FROM DROSOPHILA MELANOGASTER. TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET FR629A (RESIDUES 8- TITLE 4 92) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG11242; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBL DOMAIN, RESIDUES 8-92; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG11242, DMEL_CG11242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET14-15C KEYWDS UBL, UBIQUITIN, UBIQUITIN-LIKE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, SIGNALING PROTEIN, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,R.SHASTRY,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST, AUTHOR 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KJR 1 REMARK REVDAT 2 26-FEB-20 2KJR 1 REMARK SEQADV REVDAT 1 23-JUN-09 2KJR 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,R.SHASTRY,C.CICCOSANTI,M.JIANG,R.NAIR, JRNL AUTH 2 B.ROST,G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE JRNL TITL 2 DOMAIN FROM TUBULIN-BINDING COFACTOR B, CG11242, FROM JRNL TITL 3 DROSOPHILA MELANOGASTER. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 4 CONSORTIUM TARGET FR629A (RESIDUES 8-92) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, X-PLOR NIH 2.20 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NIH-XPLOR-2.20 REFINEMENT WITH HYDROGEN REMARK 3 BOND PMF, RADIUS OF GYRATION, RAMA, IVM MODULE. REMARK 4 REMARK 4 2KJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101206. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM MES, 50 MM ARGININE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 1.1 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 50 UM DSS, 95% H2O/5% D2O; 50 REMARK 210 MM MES, 50 MM ARGININE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 1.0 MM REMARK 210 [U-5% 13C; U-100% 15N] PROTEIN, REMARK 210 50 UM DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 125 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 37.73 -151.94 REMARK 500 1 SER A 23 -74.91 -79.87 REMARK 500 1 ASN A 25 140.22 -172.16 REMARK 500 1 MET A 72 90.01 -65.20 REMARK 500 1 ALA A 83 63.94 -102.21 REMARK 500 2 HIS A 4 2.71 57.94 REMARK 500 2 HIS A 7 -78.42 -57.48 REMARK 500 2 SER A 9 5.61 -159.23 REMARK 500 2 HIS A 24 49.60 39.95 REMARK 500 2 ASN A 25 -29.32 -151.93 REMARK 500 2 ASP A 26 -1.37 60.24 REMARK 500 2 GLU A 31 77.56 37.03 REMARK 500 2 SER A 70 -179.28 164.70 REMARK 500 2 MET A 72 93.72 -66.17 REMARK 500 2 ALA A 83 -106.65 -88.50 REMARK 500 3 HIS A 3 43.99 -86.64 REMARK 500 3 ASN A 25 3.90 56.55 REMARK 500 3 ASP A 26 29.01 45.77 REMARK 500 3 MET A 72 92.22 -68.85 REMARK 500 3 ALA A 83 67.65 -103.77 REMARK 500 3 ASN A 84 53.47 -100.71 REMARK 500 3 SER A 85 -131.77 -161.46 REMARK 500 4 HIS A 6 -91.22 54.82 REMARK 500 4 HIS A 7 -90.18 41.84 REMARK 500 4 SER A 13 81.76 72.13 REMARK 500 4 ASN A 25 151.25 58.64 REMARK 500 4 GLU A 31 66.72 35.02 REMARK 500 4 THR A 57 -49.38 -133.85 REMARK 500 4 SER A 70 174.40 167.52 REMARK 500 4 MET A 72 73.72 -62.29 REMARK 500 4 ALA A 83 75.65 -104.22 REMARK 500 5 SER A 9 -58.43 -156.44 REMARK 500 5 HIS A 10 -109.85 42.18 REMARK 500 5 SER A 13 89.40 38.72 REMARK 500 5 ASP A 14 28.47 -141.05 REMARK 500 5 HIS A 24 -79.42 -79.50 REMARK 500 5 SER A 70 176.50 168.44 REMARK 500 5 MET A 72 92.29 -66.21 REMARK 500 5 ALA A 83 68.00 -104.25 REMARK 500 6 HIS A 10 7.93 52.45 REMARK 500 6 MET A 72 85.50 -64.70 REMARK 500 6 ASN A 84 26.86 -169.57 REMARK 500 7 HIS A 7 86.39 37.81 REMARK 500 7 LYS A 12 -167.66 43.04 REMARK 500 7 SER A 13 20.06 43.56 REMARK 500 7 ASP A 14 44.31 -79.17 REMARK 500 7 HIS A 24 15.27 54.46 REMARK 500 7 THR A 57 9.61 -152.09 REMARK 500 7 SER A 70 175.92 166.03 REMARK 500 7 MET A 72 84.49 -64.60 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: FR629A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16338 RELATED DB: BMRB DBREF 2KJR A 11 95 UNP A1ZBM2 A1ZBM2_DROME 8 92 SEQADV 2KJR MET A 1 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR GLY A 2 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 3 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 4 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 5 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 6 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 7 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 8 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR SER A 9 UNP A1ZBM2 EXPRESSION TAG SEQADV 2KJR HIS A 10 UNP A1ZBM2 EXPRESSION TAG SEQRES 1 A 95 MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLY LYS SER SEQRES 2 A 95 ASP PHE ILE LYS VAL ASN VAL SER ASN SER HIS ASN ASP SEQRES 3 A 95 ALA VAL ALA PHE GLU VAL LYS LEU ALA LYS ASP LEU THR SEQRES 4 A 95 VAL ALA GLN LEU LYS THR LYS LEU GLU ILE LEU THR GLY SEQRES 5 A 95 GLY CYS ALA GLY THR MET LYS VAL GLN VAL PHE LYS GLY SEQRES 6 A 95 ASP THR CYS VAL SER THR MET ASP ASN ASN ASP ALA GLN SEQRES 7 A 95 LEU GLY TYR TYR ALA ASN SER ASP GLY LEU ARG LEU HIS SEQRES 8 A 95 VAL VAL ASP SER HELIX 1 1 THR A 39 GLY A 52 1 14 HELIX 2 2 GLN A 78 ALA A 83 1 6 SHEET 1 A 5 VAL A 28 ALA A 35 0 SHEET 2 A 5 PHE A 15 ASN A 22 -1 N VAL A 20 O ALA A 29 SHEET 3 A 5 ARG A 89 ASP A 94 1 O LEU A 90 N ASN A 19 SHEET 4 A 5 MET A 58 LYS A 64 -1 N PHE A 63 O ARG A 89 SHEET 5 A 5 THR A 67 THR A 71 -1 O SER A 70 N VAL A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1