HEADER RIBOSOMAL PROTEIN 10-JUN-09 2KJW TITLE SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE PERMUTANT P54-55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TS9; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PERMUTANT OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS COMPND 7 THERMOPHILUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPSF, RPS6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PRSETA KEYWDS S6 PERMUTANT, SOLUTION STRUCTURE, BACKBONE DYNAMICS, FOLDING, KEYWDS 2 RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.OHMAN,M.OLIVEBERG,T.OMAN REVDAT 4 01-MAY-24 2KJW 1 REMARK REVDAT 3 22-NOV-17 2KJW 1 REMARK REVDAT 2 26-JAN-10 2KJW 1 JRNL REVDAT 1 22-DEC-09 2KJW 0 JRNL AUTH A.OHMAN,T.OMAN,M.OLIVEBERG JRNL TITL SOLUTION STRUCTURES AND BACKBONE DYNAMICS OF THE RIBOSOMAL JRNL TITL 2 PROTEIN S6 AND ITS PERMUTANT P(54-55) JRNL REF PROTEIN SCI. V. 19 183 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 19937661 JRNL DOI 10.1002/PRO.298 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.HAGLUND,J.LIND,T.OMAN,A.OHMAN,L.MALER,M.OLIVEBERG REMARK 1 TITL THE HD-EXCHANGE MOTIONS OF RIBOSOMAL PROTEIN S6 ARE REMARK 1 TITL 2 INSENSITIVE TO REVERSAL OF THE PROTEIN-FOLDING PATHWAY REMARK 1 REF PROC.NATL.ACAD.SCI.USA 2009 REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 19966220 REMARK 1 DOI 10.1073/PNAS.0907665106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA.INP AND REFINE.INP USED WITH SLIGHT REMARK 3 MODIFICATIONS. REMARK 4 REMARK 4 2KJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.2 MM [U-15N] ENTITY-1, 20 REMARK 210 MM MES-2, 50 MM SODIUM CHLORIDE- REMARK 210 3, 95% H2O/5% D2O; 0.8-1.2 MM REMARK 210 ENTITY-4, 50 MM SODIUM CHLORIDE- REMARK 210 5, 100% D2O; 0.8-1.2 MM [U-13C; REMARK 210 U-15N] ENTITY-6, 20 MM MES-7, 50 REMARK 210 MM SODIUM CHLORIDE-8, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D HNHA; 2D DQF- REMARK 210 COSY; 2D 1H-1H TOCSY; 2D 1H-1H REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, ANSIG, X-PLOR, AQUA, REMARK 210 PROCHECKNMR, TALOS, MOLMOL, REMARK 210 MULDER REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 61 H LYS A 65 1.43 REMARK 500 O GLU A 64 H ILE A 68 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 -167.31 -165.21 REMARK 500 1 PHE A 7 47.85 -164.68 REMARK 500 1 GLU A 13 56.22 -146.54 REMARK 500 1 PRO A 15 -168.40 -68.63 REMARK 500 1 THR A 42 -64.26 -161.11 REMARK 500 1 PRO A 43 -160.44 -69.18 REMARK 500 1 ASP A 57 -167.60 173.72 REMARK 500 1 ARG A 89 39.60 -141.58 REMARK 500 2 GLN A 4 -149.48 -148.46 REMARK 500 2 PHE A 7 100.94 -160.80 REMARK 500 2 PRO A 15 -167.57 -71.15 REMARK 500 2 ARG A 29 57.44 -68.51 REMARK 500 2 THR A 42 -65.07 -157.91 REMARK 500 2 LEU A 52 -165.03 -100.36 REMARK 500 2 ASN A 53 -178.83 -68.69 REMARK 500 2 ASP A 57 171.05 178.81 REMARK 500 3 GLN A 4 -155.03 179.70 REMARK 500 3 TYR A 6 98.25 -64.81 REMARK 500 3 PHE A 7 25.42 -165.77 REMARK 500 3 PRO A 15 -166.83 -72.67 REMARK 500 3 THR A 42 -64.49 -161.42 REMARK 500 3 ASN A 53 172.91 -50.93 REMARK 500 3 LEU A 56 -171.41 -61.17 REMARK 500 3 ASP A 57 172.49 172.94 REMARK 500 3 LEU A 87 73.28 -60.47 REMARK 500 3 LEU A 90 91.04 -171.88 REMARK 500 4 GLN A 4 -139.06 -178.68 REMARK 500 4 PHE A 7 42.90 -169.49 REMARK 500 4 PRO A 15 -166.57 -67.99 REMARK 500 4 THR A 42 -65.10 -155.93 REMARK 500 4 LEU A 52 -168.50 -101.13 REMARK 500 4 ASN A 53 165.17 -41.77 REMARK 500 4 LEU A 56 -165.28 -62.28 REMARK 500 4 ASP A 57 172.09 174.59 REMARK 500 4 LEU A 85 -67.82 -105.74 REMARK 500 4 LEU A 87 45.19 179.65 REMARK 500 4 ALA A 91 -92.36 -116.10 REMARK 500 5 GLN A 4 116.99 179.75 REMARK 500 5 PHE A 7 51.49 -158.00 REMARK 500 5 PRO A 15 -167.54 -71.02 REMARK 500 5 THR A 42 -66.34 -149.43 REMARK 500 5 PRO A 43 -164.54 -71.59 REMARK 500 5 ASN A 53 161.14 -38.88 REMARK 500 5 LEU A 56 -162.85 -68.37 REMARK 500 6 GLN A 4 -157.02 -125.77 REMARK 500 6 TYR A 6 98.58 -61.61 REMARK 500 6 PHE A 7 25.18 -163.42 REMARK 500 6 PRO A 15 -167.21 -70.84 REMARK 500 6 ARG A 29 48.64 -69.40 REMARK 500 6 THR A 42 -66.38 -152.25 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.29 SIDE CHAIN REMARK 500 1 ARG A 24 0.26 SIDE CHAIN REMARK 500 1 ARG A 27 0.24 SIDE CHAIN REMARK 500 1 ARG A 29 0.30 SIDE CHAIN REMARK 500 1 ARG A 33 0.28 SIDE CHAIN REMARK 500 1 ARG A 34 0.13 SIDE CHAIN REMARK 500 1 ARG A 45 0.32 SIDE CHAIN REMARK 500 1 ARG A 70 0.31 SIDE CHAIN REMARK 500 1 ARG A 78 0.21 SIDE CHAIN REMARK 500 1 ARG A 88 0.30 SIDE CHAIN REMARK 500 1 ARG A 89 0.23 SIDE CHAIN REMARK 500 2 ARG A 18 0.28 SIDE CHAIN REMARK 500 2 ARG A 24 0.15 SIDE CHAIN REMARK 500 2 ARG A 27 0.32 SIDE CHAIN REMARK 500 2 ARG A 29 0.30 SIDE CHAIN REMARK 500 2 ARG A 33 0.30 SIDE CHAIN REMARK 500 2 ARG A 34 0.20 SIDE CHAIN REMARK 500 2 ARG A 45 0.18 SIDE CHAIN REMARK 500 2 ARG A 70 0.28 SIDE CHAIN REMARK 500 2 ARG A 78 0.20 SIDE CHAIN REMARK 500 2 ARG A 88 0.19 SIDE CHAIN REMARK 500 2 ARG A 89 0.27 SIDE CHAIN REMARK 500 3 ARG A 18 0.32 SIDE CHAIN REMARK 500 3 ARG A 24 0.21 SIDE CHAIN REMARK 500 3 ARG A 27 0.28 SIDE CHAIN REMARK 500 3 ARG A 29 0.32 SIDE CHAIN REMARK 500 3 ARG A 33 0.20 SIDE CHAIN REMARK 500 3 ARG A 34 0.26 SIDE CHAIN REMARK 500 3 ARG A 45 0.31 SIDE CHAIN REMARK 500 3 ARG A 70 0.26 SIDE CHAIN REMARK 500 3 ARG A 78 0.32 SIDE CHAIN REMARK 500 3 ARG A 89 0.21 SIDE CHAIN REMARK 500 4 ARG A 18 0.17 SIDE CHAIN REMARK 500 4 ARG A 24 0.10 SIDE CHAIN REMARK 500 4 ARG A 27 0.31 SIDE CHAIN REMARK 500 4 ARG A 29 0.24 SIDE CHAIN REMARK 500 4 ARG A 33 0.32 SIDE CHAIN REMARK 500 4 ARG A 34 0.30 SIDE CHAIN REMARK 500 4 ARG A 45 0.24 SIDE CHAIN REMARK 500 4 ARG A 70 0.27 SIDE CHAIN REMARK 500 4 ARG A 78 0.23 SIDE CHAIN REMARK 500 4 ARG A 88 0.31 SIDE CHAIN REMARK 500 4 ARG A 89 0.17 SIDE CHAIN REMARK 500 5 ARG A 18 0.28 SIDE CHAIN REMARK 500 5 ARG A 24 0.17 SIDE CHAIN REMARK 500 5 ARG A 27 0.18 SIDE CHAIN REMARK 500 5 ARG A 29 0.31 SIDE CHAIN REMARK 500 5 ARG A 33 0.28 SIDE CHAIN REMARK 500 5 ARG A 34 0.23 SIDE CHAIN REMARK 500 5 ARG A 45 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 208 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RIS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PARENT PROTEIN S6. REMARK 900 RELATED ID: 16344 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF PARENT PROTEIN S6. REMARK 900 RELATED ID: 2KJV RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PARENT PROTEIN S6. REMARK 900 RELATED ID: 16345 RELATED DB: BMRB DBREF 2KJW A 2 38 UNP P23370 RS6_THETH 55 91 DBREF 2KJW A 45 96 UNP P23370 RS6_THETH 3 54 SEQADV 2KJW ALA A 39 UNP P23370 LINKER SEQADV 2KJW SER A 40 UNP P23370 LINKER SEQADV 2KJW THR A 41 UNP P23370 LINKER SEQADV 2KJW THR A 42 UNP P23370 LINKER SEQADV 2KJW PRO A 43 UNP P23370 LINKER SEQADV 2KJW GLY A 44 UNP P23370 LINKER SEQRES 1 A 96 MET ASP PRO GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU SEQRES 2 A 96 MET PRO GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU SEQRES 3 A 96 ARG ILE ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SEQRES 4 A 96 SER THR THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU SEQRES 5 A 96 ASN PRO ASN LEU ASP GLN SER GLN LEU ALA LEU GLU LYS SEQRES 6 A 96 GLU ILE ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG SEQRES 7 A 96 VAL GLU LYS VAL GLU GLU LEU GLY LEU ARG ARG LEU ALA SEQRES 8 A 96 TYR PRO ILE ALA LYS HELIX 1 1 PRO A 15 ARG A 29 1 15 HELIX 2 2 ASP A 57 GLY A 76 1 20 SHEET 1 A 4 ARG A 34 ALA A 39 0 SHEET 2 A 4 TYR A 46 VAL A 51 -1 O VAL A 51 N ARG A 34 SHEET 3 A 4 LEU A 8 TYR A 10 -1 N TYR A 10 O VAL A 48 SHEET 4 A 4 GLU A 83 GLU A 84 -1 O GLU A 83 N TRP A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1