HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-JUN-09 2KK8 TITLE NMR SOLUTION STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN OBTAINED TITLE 2 FROM ARABIDOPSIS THALIANA: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET AR3449A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN AT4G05270; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-74; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT4G05270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS ARABIDOPSIS THALIANA, AR3449A, UNCHARACTERIZED PUTATIVE PROTEIN, KEYWDS 2 NESG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.MANI,S.V.T.GURLA,R.SHASTRY,C.CICCOSANTI,E.FOOTE,M.JIANG,R.XIAO, AUTHOR 2 R.NAIR,J.EVERETT,Y.HUANG,T.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 08-MAY-24 2KK8 1 REMARK REVDAT 3 14-JUN-23 2KK8 1 REMARK REVDAT 2 26-FEB-20 2KK8 1 REMARK SEQADV REVDAT 1 30-JUN-09 2KK8 0 JRNL AUTH R.MANI,S.V.T.GURLA,R.SHASTRY,C.CICCOSANTI,E.FOOTE,M.JIANG, JRNL AUTH 2 R.XIAO,R.NAIR,J.EVERETT,Y.HUANG,T.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN JRNL TITL 2 OBTAINED FROM ARABIDOPSIS THALIANA: NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS CONSORTIUM TARGET AR3449A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS OBTAINED USING TRIPLE REMARK 3 RESONANCE NMR SPECTROSCOPY. GFT-NMR EXPERIMENTS WERE USED FOR REMARK 3 BACKBONE ASSIGNMENTS. AUTOMATED NOESY ASSIGNMENTS WERE MADE REMARK 3 USING AUTOSTRUCTURE AND CYANA-2.1. DIHEDRAL ANGLE CONSTRAINTS REMARK 3 WERE OBTEINED FROM TALOS. THE ASSIGNMENTS WERE VALIDATED USING REMARK 3 AVS SOFTWARE. FINAL STRUCTURE FACTORS DETERMINED USING PSVS: REMARK 3 ORDERED RESIDUES: ALPHA HELICES- 33.44, 67-70, BETA STRANDS- 22- REMARK 3 27, 11-17, 78-82, 51-55, 58-59. RAMACHANDRAN STATISTICS FOR REMARK 3 ORDERED RESIDUES: 89.1% MOST FAVOURED REGIONS, 10.9% REMARK 3 ADDITIONALLY FAVOURED REGIONS. PROCHECK SCORES FOR ORDERED REMARK 3 RESIDUES (RAW/Z): PHI/PSI -0.43/-1.38, ALL -0.18/-1.06, REMARK 3 MOLPROBITY CLASHSCORES- 21.46/-2.16. RPF SCORE FOR GOODNESS FIT REMARK 3 TO THE NOESY DATA: RECALL-0.998, PRECISION-0.93, FINAL DP-SCORE- REMARK 3 0.869 REMARK 4 REMARK 4 2KK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101223. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11 MM [U-100% 13C; U-100% 15N] REMARK 210 AR3449A, 90% H2O/10% D2O; 1.22 REMARK 210 MM [U-10% 13C; U-100% 15N] REMARK 210 AR3449A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 ALIPHATIC NOESY; 3D 1H-13C REMARK 210 AROMATIC NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC; 3D HBHA(CO)NH; REMARK 210 3D CBCA(CO)NH; (4,3)D GFT- REMARK 210 HNNCABCA; (4,3)D GFT-CABCA(CO) REMARK 210 NHN; 3D HNCO; 3D HNCA; 3D HNCACB; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 AUTOASSIGN 2.4.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 94.74 62.78 REMARK 500 1 LEU A 61 67.30 -112.87 REMARK 500 2 HIS A 4 96.53 -58.77 REMARK 500 2 HIS A 10 130.42 178.36 REMARK 500 2 ASP A 56 -73.58 71.48 REMARK 500 2 PRO A 74 42.29 -74.50 REMARK 500 3 ASP A 56 -72.87 66.49 REMARK 500 4 HIS A 3 97.47 -65.74 REMARK 500 4 SER A 83 98.36 -66.97 REMARK 500 5 PRO A 47 153.93 -48.05 REMARK 500 5 ASP A 56 -63.67 69.73 REMARK 500 6 HIS A 10 73.51 60.54 REMARK 500 6 ASP A 56 -16.06 73.09 REMARK 500 6 ARG A 62 -65.47 -126.99 REMARK 500 6 GLU A 63 -29.08 71.32 REMARK 500 6 ASP A 77 99.77 -63.38 REMARK 500 7 ASP A 56 -74.52 69.71 REMARK 500 8 HIS A 3 45.37 -142.77 REMARK 500 10 HIS A 8 17.73 -153.63 REMARK 500 10 ASP A 56 -56.85 72.56 REMARK 500 13 HIS A 8 100.93 -58.20 REMARK 500 13 HIS A 10 99.46 -167.05 REMARK 500 13 ASP A 56 -76.65 69.09 REMARK 500 13 GLN A 71 74.41 59.13 REMARK 500 14 HIS A 10 84.85 -161.70 REMARK 500 15 HIS A 8 39.14 -140.40 REMARK 500 15 HIS A 10 118.76 177.21 REMARK 500 15 ASP A 56 -69.66 70.55 REMARK 500 16 HIS A 3 108.59 -162.52 REMARK 500 16 HIS A 10 85.33 53.54 REMARK 500 17 HIS A 8 133.33 176.60 REMARK 500 17 HIS A 10 107.42 176.39 REMARK 500 17 ASP A 56 -77.61 65.77 REMARK 500 18 ASP A 56 -70.58 72.13 REMARK 500 18 GLN A 71 80.28 64.91 REMARK 500 19 ASP A 56 -23.27 74.46 REMARK 500 19 GLN A 71 62.30 60.25 REMARK 500 20 HIS A 5 94.77 -67.68 REMARK 500 20 HIS A 10 118.67 -169.93 REMARK 500 20 ASP A 56 -66.83 67.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR3449A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16355 RELATED DB: BMRB DBREF 2KK8 A 11 84 UNP Q9M0W8 Q9M0W8_ARATH 1 74 SEQADV 2KK8 MET A 1 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 GLY A 2 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 3 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 4 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 5 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 6 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 7 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 8 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 SER A 9 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 10 UNP Q9M0W8 EXPRESSION TAG SEQRES 1 A 84 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET LYS PHE SEQRES 2 A 84 LEU VAL GLU ASN LEU ASN GLY SER SER PHE GLU LEU GLU SEQRES 3 A 84 VAL ASP TYR ARG ASP THR LEU LEU VAL VAL LYS GLN LYS SEQRES 4 A 84 ILE GLU ARG SER GLN HIS ILE PRO VAL SER LYS GLN THR SEQRES 5 A 84 LEU ILE VAL ASP GLY ILE VAL ILE LEU ARG GLU ASP LEU SEQRES 6 A 84 THR VAL GLU GLN CYS GLN ILE VAL PRO THR SER ASP ILE SEQRES 7 A 84 GLN LEU GLU VAL SER SER HELIX 1 1 THR A 32 HIS A 45 1 14 HELIX 2 2 PRO A 47 SER A 49 5 3 HELIX 3 3 THR A 66 GLN A 71 1 6 SHEET 1 A 5 SER A 22 VAL A 27 0 SHEET 2 A 5 MET A 11 ASN A 17 -1 N VAL A 15 O PHE A 23 SHEET 3 A 5 ILE A 78 VAL A 82 1 O LEU A 80 N GLU A 16 SHEET 4 A 5 GLN A 51 VAL A 55 -1 N ILE A 54 O GLN A 79 SHEET 5 A 5 ILE A 58 VAL A 59 -1 O ILE A 58 N VAL A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1