data_2KKF # _entry.id 2KKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KKF pdb_00002kkf 10.2210/pdb2kkf/pdb RCSB RCSB101230 ? ? WWPDB D_1000101230 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KKF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cierpicki, T.' 1 'Riesbeck, J.E.' 2 'Grembecka, J.E.' 3 'Lukasik, S.M.' 4 'Popovic, R.' 5 'Omonkowska, M.' 6 'Shultis, D.S.' 7 'Zeleznik-Le, N.J.' 8 'Bushweller, J.H.' 9 # _citation.id primary _citation.title 'Structure of the MLL CXXC domain-DNA complex and its functional role in MLL-AF9 leukemia.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 62 _citation.page_last 68 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20010842 _citation.pdbx_database_id_DOI 10.1038/nsmb.1714 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cierpicki, T.' 1 ? primary 'Risner, L.E.' 2 ? primary 'Grembecka, J.' 3 ? primary 'Lukasik, S.M.' 4 ? primary 'Popovic, R.' 5 ? primary 'Omonkowska, M.' 6 ? primary 'Shultis, D.D.' 7 ? primary 'Zeleznik-Le, N.J.' 8 ? primary 'Bushweller, J.H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase HRX' 6677.991 1 2.1.1.43 ? 'CXXC DOMAIN: UNP RESIDUES 1147-1203' ? 2 polymer syn "5'-D(*CP*CP*CP*TP*GP*CP*GP*CP*AP*GP*GP*G)-3'" 3664.380 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Zinc finger protein HRX, ALL-1, Trithorax-like protein, Lysine N-methyltransferase 2A, CXXC-type zinc finger protein 7' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSK GSKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSK A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DG)(DC)(DG)(DC)(DA)(DG)(DG)(DG)' CCCTGCGCAGGG B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 LYS n 1 5 GLY n 1 6 ARG n 1 7 ARG n 1 8 SER n 1 9 ARG n 1 10 ARG n 1 11 CYS n 1 12 GLY n 1 13 GLN n 1 14 CYS n 1 15 PRO n 1 16 GLY n 1 17 CYS n 1 18 GLN n 1 19 VAL n 1 20 PRO n 1 21 GLU n 1 22 ASP n 1 23 CYS n 1 24 GLY n 1 25 VAL n 1 26 CYS n 1 27 THR n 1 28 ASN n 1 29 CYS n 1 30 LEU n 1 31 ASP n 1 32 LYS n 1 33 PRO n 1 34 LYS n 1 35 PHE n 1 36 GLY n 1 37 GLY n 1 38 ARG n 1 39 ASN n 1 40 ILE n 1 41 LYS n 1 42 LYS n 1 43 GLN n 1 44 CYS n 1 45 CYS n 1 46 LYS n 1 47 MET n 1 48 ARG n 1 49 LYS n 1 50 CYS n 1 51 GLN n 1 52 ASN n 1 53 LEU n 1 54 GLN n 1 55 TRP n 1 56 MET n 1 57 PRO n 1 58 SER n 1 59 LYS n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DG n 2 11 DG n 2 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALL1, CXXC7, HRX, HTRX, KMT2A, MLL, TRX1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4-T2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Palindromic DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HRX_HUMAN Q03164 1 KKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSK 1147 ? 2 PDB 2KKF 2KKF 2 CCCTGCGCAGGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KKF A 3 ? 59 ? Q03164 1147 ? 1203 ? 1147 1203 2 2 2KKF B 1 ? 12 ? 2KKF 101 ? 112 ? 101 112 3 2 2KKF C 1 ? 12 ? 2KKF 101 ? 112 ? 101 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KKF GLY A 1 ? UNP Q03164 ? ? 'expression tag' 1145 1 1 2KKF SER A 2 ? UNP Q03164 ? ? 'expression tag' 1146 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY' 1 3 3 'HNCO NCO' 1 4 3 'HNCO COCA' 1 5 3 HACAN 1 6 3 IPAP 1 7 4 '2D 1H-13C HSQC NO DECOUPLING' 1 8 2 '2D 1H-13C HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 25 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure Ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM [U-98% 13C; U-98% 15N] CXXC domain-1, 1 mM DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-2, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;1 mM [U-98% 13C; U-98% 15N] CXXC domain-3, 1 mM DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-4, 100% D2O ; 2 '100% D2O' ;1 mM [U-98% 13C; U-98% 15N] CXXC domain-5, 1 mM DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-6, 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' ;1 mM [U-98% 15N] CXXC domain-7, 1 mM DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-8, 100% D2O ; 4 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'VARIAN INOVA' # _pdbx_nmr_refine.entry_id 2KKF _pdbx_nmr_refine.method 'SIMULATED ANNEALING, DISTANCE GEOMETRY' _pdbx_nmr_refine.details 'HIGH TEMP ANNEALING WITHOUT RRDCS, LOW TEMP ANNEALING WITH RDCS' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KKF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KKF _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'structure solution' Sparky 3.110 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'structure solution' NMRPipe 2.5 2 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.2 3 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.2 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KKF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KKF _struct.title 'Solution structure of MLL CXXC domain in complex with palindromic CPG DNA' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KKF _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;PROTEIN-DNA COMPLEX, CXXC DOMAIN, MLL, CPG DNA, CHROMOSOMAL REARRANGEMENT, DNA-BINDING, METAL-BINDING, NUCLEUS, ZINC-FINGER, DNA BINDING PROTEIN-DNA COMPLEX, Alternative splicing, Apoptosis, Bromodomain, Chromatin regulator, Isopeptide bond, Methyltransferase, Phosphoprotein, Polymorphism, Proto-oncogene, S-adenosyl-L-methionine, Transcription, Transcription regulation, Transferase, Ubl conjugation, Zinc ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 14 ? VAL A 19 ? CYS A 1158 VAL A 1163 1 ? 6 HELX_P HELX_P2 2 CYS A 26 ? LYS A 32 ? CYS A 1170 LYS A 1176 1 ? 7 HELX_P HELX_P3 3 PRO A 33 ? GLY A 36 ? PRO A 1177 GLY A 1180 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 11 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1155 A ZN 2001 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc2 metalc ? ? A CYS 14 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1158 A ZN 2001 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc3 metalc ? ? A CYS 17 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1161 A ZN 2001 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc4 metalc ? ? A CYS 23 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1167 A ZN 2002 1_555 ? ? ? ? ? ? ? 2.236 ? ? metalc5 metalc ? ? A CYS 26 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1170 A ZN 2002 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc6 metalc ? ? A CYS 29 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1173 A ZN 2002 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc7 metalc ? ? A CYS 45 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1189 A ZN 2002 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc8 metalc ? ? A CYS 50 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1194 A ZN 2001 1_555 ? ? ? ? ? ? ? 2.294 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 101 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 101 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 101 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 102 C DG 111 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 103 C DG 110 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog6 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 105 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 105 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 105 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 106 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 106 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 106 C DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 107 C DC 106 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 108 C DG 105 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog14 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 109 C DT 104 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog15 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 110 C DC 103 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog16 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 111 C DC 102 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog17 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 112 C DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 112 C DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 112 C DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 2001 ? 5 'BINDING SITE FOR RESIDUE ZN A 2001' AC2 Software A ZN 2002 ? 4 'BINDING SITE FOR RESIDUE ZN A 2002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 11 ? CYS A 1155 . ? 1_555 ? 2 AC1 5 GLY A 12 ? GLY A 1156 . ? 1_555 ? 3 AC1 5 CYS A 14 ? CYS A 1158 . ? 1_555 ? 4 AC1 5 CYS A 17 ? CYS A 1161 . ? 1_555 ? 5 AC1 5 CYS A 50 ? CYS A 1194 . ? 1_555 ? 6 AC2 4 CYS A 23 ? CYS A 1167 . ? 1_555 ? 7 AC2 4 CYS A 26 ? CYS A 1170 . ? 1_555 ? 8 AC2 4 CYS A 29 ? CYS A 1173 . ? 1_555 ? 9 AC2 4 CYS A 45 ? CYS A 1189 . ? 1_555 ? # _atom_sites.entry_id 2KKF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1145 ? ? ? A . n A 1 2 SER 2 1146 ? ? ? A . n A 1 3 LYS 3 1147 1147 LYS LYS A . n A 1 4 LYS 4 1148 1148 LYS LYS A . n A 1 5 GLY 5 1149 1149 GLY GLY A . n A 1 6 ARG 6 1150 1150 ARG ARG A . n A 1 7 ARG 7 1151 1151 ARG ARG A . n A 1 8 SER 8 1152 1152 SER SER A . n A 1 9 ARG 9 1153 1153 ARG ARG A . n A 1 10 ARG 10 1154 1154 ARG ARG A . n A 1 11 CYS 11 1155 1155 CYS CYS A . n A 1 12 GLY 12 1156 1156 GLY GLY A . n A 1 13 GLN 13 1157 1157 GLN GLN A . n A 1 14 CYS 14 1158 1158 CYS CYS A . n A 1 15 PRO 15 1159 1159 PRO PRO A . n A 1 16 GLY 16 1160 1160 GLY GLY A . n A 1 17 CYS 17 1161 1161 CYS CYS A . n A 1 18 GLN 18 1162 1162 GLN GLN A . n A 1 19 VAL 19 1163 1163 VAL VAL A . n A 1 20 PRO 20 1164 1164 PRO PRO A . n A 1 21 GLU 21 1165 1165 GLU GLU A . n A 1 22 ASP 22 1166 1166 ASP ASP A . n A 1 23 CYS 23 1167 1167 CYS CYS A . n A 1 24 GLY 24 1168 1168 GLY GLY A . n A 1 25 VAL 25 1169 1169 VAL VAL A . n A 1 26 CYS 26 1170 1170 CYS CYS A . n A 1 27 THR 27 1171 1171 THR THR A . n A 1 28 ASN 28 1172 1172 ASN ASN A . n A 1 29 CYS 29 1173 1173 CYS CYS A . n A 1 30 LEU 30 1174 1174 LEU LEU A . n A 1 31 ASP 31 1175 1175 ASP ASP A . n A 1 32 LYS 32 1176 1176 LYS LYS A . n A 1 33 PRO 33 1177 1177 PRO PRO A . n A 1 34 LYS 34 1178 1178 LYS LYS A . n A 1 35 PHE 35 1179 1179 PHE PHE A . n A 1 36 GLY 36 1180 1180 GLY GLY A . n A 1 37 GLY 37 1181 1181 GLY GLY A . n A 1 38 ARG 38 1182 1182 ARG ARG A . n A 1 39 ASN 39 1183 1183 ASN ASN A . n A 1 40 ILE 40 1184 1184 ILE ILE A . n A 1 41 LYS 41 1185 1185 LYS LYS A . n A 1 42 LYS 42 1186 1186 LYS LYS A . n A 1 43 GLN 43 1187 1187 GLN GLN A . n A 1 44 CYS 44 1188 1188 CYS CYS A . n A 1 45 CYS 45 1189 1189 CYS CYS A . n A 1 46 LYS 46 1190 1190 LYS LYS A . n A 1 47 MET 47 1191 1191 MET MET A . n A 1 48 ARG 48 1192 1192 ARG ARG A . n A 1 49 LYS 49 1193 1193 LYS LYS A . n A 1 50 CYS 50 1194 1194 CYS CYS A . n A 1 51 GLN 51 1195 1195 GLN GLN A . n A 1 52 ASN 52 1196 1196 ASN ASN A . n A 1 53 LEU 53 1197 1197 LEU LEU A . n A 1 54 GLN 54 1198 1198 GLN GLN A . n A 1 55 TRP 55 1199 1199 TRP TRP A . n A 1 56 MET 56 1200 1200 MET MET A . n A 1 57 PRO 57 1201 1201 PRO PRO A . n A 1 58 SER 58 1202 1202 SER SER A . n A 1 59 LYS 59 1203 1203 LYS LYS A . n B 2 1 DC 1 101 101 DC DC B . n B 2 2 DC 2 102 102 DC DC B . n B 2 3 DC 3 103 103 DC DC B . n B 2 4 DT 4 104 104 DT DT B . n B 2 5 DG 5 105 105 DG DG B . n B 2 6 DC 6 106 106 DC DC B . n B 2 7 DG 7 107 107 DG DG B . n B 2 8 DC 8 108 108 DC DC B . n B 2 9 DA 9 109 109 DA DA B . n B 2 10 DG 10 110 110 DG DG B . n B 2 11 DG 11 111 111 DG DG B . n B 2 12 DG 12 112 112 DG DG B . n C 2 1 DC 1 101 101 DC DC C . n C 2 2 DC 2 102 102 DC DC C . n C 2 3 DC 3 103 103 DC DC C . n C 2 4 DT 4 104 104 DT DT C . n C 2 5 DG 5 105 105 DG DG C . n C 2 6 DC 6 106 106 DC DC C . n C 2 7 DG 7 107 107 DG DG C . n C 2 8 DC 8 108 108 DC DC C . n C 2 9 DA 9 109 109 DA DA C . n C 2 10 DG 10 110 110 DG DG C . n C 2 11 DG 11 111 111 DG DG C . n C 2 12 DG 12 112 112 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN 1 2001 2001 ZN ZN A . E 3 ZN 1 2002 2002 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 11 ? A CYS 1155 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 14 ? A CYS 1158 ? 1_555 99.5 ? 2 SG ? A CYS 11 ? A CYS 1155 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 17 ? A CYS 1161 ? 1_555 124.9 ? 3 SG ? A CYS 14 ? A CYS 1158 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 17 ? A CYS 1161 ? 1_555 99.0 ? 4 SG ? A CYS 11 ? A CYS 1155 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 50 ? A CYS 1194 ? 1_555 99.9 ? 5 SG ? A CYS 14 ? A CYS 1158 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 50 ? A CYS 1194 ? 1_555 108.9 ? 6 SG ? A CYS 17 ? A CYS 1161 ? 1_555 ZN ? D ZN . ? A ZN 2001 ? 1_555 SG ? A CYS 50 ? A CYS 1194 ? 1_555 121.7 ? 7 SG ? A CYS 23 ? A CYS 1167 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 26 ? A CYS 1170 ? 1_555 107.9 ? 8 SG ? A CYS 23 ? A CYS 1167 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 29 ? A CYS 1173 ? 1_555 125.2 ? 9 SG ? A CYS 26 ? A CYS 1170 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 29 ? A CYS 1173 ? 1_555 98.3 ? 10 SG ? A CYS 23 ? A CYS 1167 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 45 ? A CYS 1189 ? 1_555 104.9 ? 11 SG ? A CYS 26 ? A CYS 1170 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 45 ? A CYS 1189 ? 1_555 122.1 ? 12 SG ? A CYS 29 ? A CYS 1173 ? 1_555 ZN ? E ZN . ? A ZN 2002 ? 1_555 SG ? A CYS 45 ? A CYS 1189 ? 1_555 100.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'CXXC domain-1' 1 ? mM '[U-98% 13C; U-98% 15N]' 1 ;DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-2 ; 1 ? mM ? 1 'CXXC domain-3' 1 ? mM '[U-98% 13C; U-98% 15N]' 2 ;DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-4 ; 1 ? mM ? 2 'CXXC domain-5' 1 ? mM '[U-98% 13C; U-98% 15N]' 3 ;DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-6 ; 1 ? mM ? 3 'CXXC domain-7' 1 ? mM '[U-98% 15N]' 4 ;DNA (5'-D(*DCP*DCP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DGP*DG)-3')-8 ; 1 ? mM ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 2 2 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 3 3 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 4 4 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 5 5 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 6 5 H A ARG 1153 ? ? O A GLN 1198 ? ? 1.59 7 6 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 8 7 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 9 8 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 10 9 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 11 10 H22 B DG 105 ? ? O2 C DC 108 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 1150 ? ? -84.79 -81.56 2 1 ARG A 1151 ? ? 37.25 94.65 3 1 ASN A 1183 ? ? 80.22 59.96 4 1 ASN A 1196 ? ? -142.81 57.40 5 1 MET A 1200 ? ? 58.12 78.83 6 2 ARG A 1151 ? ? 73.31 99.94 7 2 ASN A 1196 ? ? -144.42 57.76 8 2 MET A 1200 ? ? 56.51 165.31 9 3 ASN A 1183 ? ? 80.62 61.07 10 3 GLN A 1198 ? ? -106.83 -162.07 11 3 MET A 1200 ? ? 58.12 179.09 12 3 SER A 1202 ? ? 69.72 61.95 13 4 ARG A 1150 ? ? 84.53 81.18 14 4 ARG A 1151 ? ? -176.49 81.27 15 4 ASN A 1196 ? ? -146.88 58.22 16 4 MET A 1200 ? ? 57.06 -179.21 17 4 SER A 1202 ? ? -156.26 -54.96 18 5 ARG A 1150 ? ? 83.33 145.61 19 5 ARG A 1151 ? ? 61.63 -154.82 20 5 ASN A 1183 ? ? 77.60 58.47 21 5 ASN A 1196 ? ? -143.61 56.77 22 5 MET A 1200 ? ? 66.97 164.62 23 5 SER A 1202 ? ? 73.19 111.78 24 6 ARG A 1150 ? ? -3.82 105.70 25 6 ASN A 1183 ? ? 82.09 58.93 26 6 ASN A 1196 ? ? -141.90 57.83 27 6 MET A 1200 ? ? 57.39 78.12 28 6 SER A 1202 ? ? 72.13 139.31 29 7 LYS A 1148 ? ? 70.92 137.31 30 7 ARG A 1150 ? ? 73.56 87.47 31 7 ARG A 1151 ? ? -177.11 47.40 32 7 ASN A 1183 ? ? 73.33 54.75 33 7 ASN A 1196 ? ? -146.60 55.33 34 7 GLN A 1198 ? ? -109.19 -153.12 35 7 SER A 1202 ? ? -155.65 84.40 36 8 ARG A 1150 ? ? 80.08 167.48 37 8 ARG A 1151 ? ? 81.02 105.72 38 8 ASN A 1183 ? ? 76.89 59.88 39 8 ASN A 1196 ? ? -144.54 59.27 40 8 MET A 1200 ? ? 62.76 61.64 41 8 SER A 1202 ? ? 77.87 -64.29 42 9 ARG A 1150 ? ? -173.56 -72.44 43 9 SER A 1152 ? ? -65.34 -176.81 44 9 ASN A 1183 ? ? 79.28 58.31 45 9 ASN A 1196 ? ? -147.88 58.37 46 10 LYS A 1148 ? ? 68.97 128.54 47 10 ARG A 1150 ? ? 88.91 117.08 48 10 ARG A 1151 ? ? -173.57 106.40 49 10 ASN A 1196 ? ? -142.58 55.54 50 10 MET A 1200 ? ? 53.27 -177.06 51 10 SER A 1202 ? ? 72.58 -179.14 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1145 ? A GLY 1 2 1 Y 1 A SER 1146 ? A SER 2 3 2 Y 1 A GLY 1145 ? A GLY 1 4 2 Y 1 A SER 1146 ? A SER 2 5 3 Y 1 A GLY 1145 ? A GLY 1 6 3 Y 1 A SER 1146 ? A SER 2 7 4 Y 1 A GLY 1145 ? A GLY 1 8 4 Y 1 A SER 1146 ? A SER 2 9 5 Y 1 A GLY 1145 ? A GLY 1 10 5 Y 1 A SER 1146 ? A SER 2 11 6 Y 1 A GLY 1145 ? A GLY 1 12 6 Y 1 A SER 1146 ? A SER 2 13 7 Y 1 A GLY 1145 ? A GLY 1 14 7 Y 1 A SER 1146 ? A SER 2 15 8 Y 1 A GLY 1145 ? A GLY 1 16 8 Y 1 A SER 1146 ? A SER 2 17 9 Y 1 A GLY 1145 ? A GLY 1 18 9 Y 1 A SER 1146 ? A SER 2 19 10 Y 1 A GLY 1145 ? A GLY 1 20 10 Y 1 A SER 1146 ? A SER 2 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KKF 'double helix' 2KKF 'b-form double helix' 2KKF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 -0.226 0.206 0.244 -12.946 1.078 3.622 1 B_DC101:DG112_C B 101 ? C 112 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 -0.171 0.365 -0.059 -7.784 -1.503 6.321 2 B_DC102:DG111_C B 102 ? C 111 ? ? 1 1 B DC 3 1_555 C DG 10 1_555 -0.151 0.628 -0.339 -6.339 1.070 6.585 3 B_DC103:DG110_C B 103 ? C 110 ? ? ? 1 B DG 5 1_555 C DC 8 1_555 -0.070 0.047 -0.361 4.479 5.148 7.862 4 B_DG105:DC108_C B 105 ? C 108 ? 19 1 1 B DC 6 1_555 C DG 7 1_555 -0.745 -0.037 -0.808 -4.012 8.987 -7.383 5 B_DC106:DG107_C B 106 ? C 107 ? 19 1 1 B DG 7 1_555 C DC 6 1_555 -0.130 0.606 -0.056 8.335 0.721 6.314 6 B_DG107:DC106_C B 107 ? C 106 ? ? ? 1 B DC 8 1_555 C DG 5 1_555 -0.147 0.481 -0.179 -2.750 0.376 4.883 7 B_DC108:DG105_C B 108 ? C 105 ? ? 1 1 B DA 9 1_555 C DT 4 1_555 0.059 0.624 0.238 10.191 -5.105 6.282 8 B_DA109:DT104_C B 109 ? C 104 ? ? ? 1 B DG 10 1_555 C DC 3 1_555 0.122 0.606 -0.345 5.873 0.946 7.015 9 B_DG110:DC103_C B 110 ? C 103 ? ? ? 1 B DG 11 1_555 C DC 2 1_555 0.173 0.374 -0.038 8.025 -1.450 6.404 10 B_DG111:DC102_C B 111 ? C 102 ? ? 1 1 B DG 12 1_555 C DC 1 1_555 0.216 0.216 0.254 13.336 1.369 3.598 11 B_DG112:DC101_C B 112 ? C 101 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.053 0.317 3.146 -0.221 0.709 36.734 0.410 0.055 3.152 1.124 0.350 36.741 1 BB_DC101DC102:DG111DG112_CC B 101 ? C 112 ? B 102 ? C 111 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.176 0.390 3.269 -1.006 0.655 36.964 0.526 0.142 3.278 1.032 1.586 36.983 2 BB_DC102DC103:DG110DG111_CC B 102 ? C 111 ? B 103 ? C 110 ? 1 B DC 3 1_555 C DG 10 1_555 B DG 5 1_555 C DC 8 1_555 0.170 0.658 6.401 -1.253 -1.316 72.989 0.637 -0.223 6.387 -1.106 1.053 73.008 3 BB_DC103DG105:DC108DG110_CC B 103 ? C 110 ? B 105 ? C 108 ? 1 B DG 5 1_555 C DC 8 1_555 B DC 6 1_555 C DG 7 1_555 -1.162 -0.034 3.676 -0.094 4.990 33.685 -0.952 1.968 3.637 8.553 0.160 34.042 4 BB_DG105DC106:DG107DC108_CC B 105 ? C 108 ? B 106 ? C 107 ? 1 B DC 6 1_555 C DG 7 1_555 B DG 7 1_555 C DC 6 1_555 1.040 0.401 3.213 -0.827 -5.530 37.759 1.292 -1.693 3.103 -8.488 1.270 38.156 5 BB_DC106DG107:DC106DG107_CC B 106 ? C 107 ? B 107 ? C 106 ? 1 B DG 7 1_555 C DC 6 1_555 B DC 8 1_555 C DG 5 1_555 -0.101 0.404 3.757 0.102 3.057 36.983 0.163 0.174 3.777 4.809 -0.161 37.105 6 BB_DG107DC108:DG105DC106_CC B 107 ? C 106 ? B 108 ? C 105 ? 1 B DC 8 1_555 C DG 5 1_555 B DA 9 1_555 C DT 4 1_555 0.180 0.330 2.746 -0.614 -0.735 36.947 0.604 -0.353 2.736 -1.160 0.968 36.959 7 BB_DC108DA109:DT104DG105_CC B 108 ? C 105 ? B 109 ? C 104 ? 1 B DA 9 1_555 C DT 4 1_555 B DG 10 1_555 C DC 3 1_555 0.124 0.262 3.675 1.204 -0.920 36.692 0.557 -0.013 3.670 -1.460 -1.911 36.722 8 BB_DA109DG110:DC103DT104_CC B 109 ? C 104 ? B 110 ? C 103 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 0.155 0.380 3.265 0.975 0.468 36.763 0.538 -0.114 3.273 0.741 -1.546 36.779 9 BB_DG110DG111:DC102DC103_CC B 110 ? C 103 ? B 111 ? C 102 ? 1 B DG 11 1_555 C DC 2 1_555 B DG 12 1_555 C DC 1 1_555 0.046 0.314 3.145 0.214 0.719 36.622 0.405 -0.045 3.151 1.144 -0.341 36.629 10 BB_DG111DG112:DC101DC102_CC B 111 ? C 102 ? B 112 ? C 101 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #