HEADER TRANSCRIPTION 24-JUN-09 2KKJ TITLE SOLUTION STRUCTURE OF THE NUCLEAR COACTIVATOR BINDING DOMAIN OF CBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEAR COACTIVATOR BINDING DOMAIN, UNP RESIDUES 2059-2441; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 9 OTHER_DETAILS: COEXPRESSED WITH ACTR KEYWDS CREB BINDING PROTEIN, IBID, NUCLEAR COACTIVATOR DOMAIN, CBP, P160, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.KJAERGAARD,K.TEILUM,F.M.POULSEN REVDAT 3 16-MAR-22 2KKJ 1 REMARK REVDAT 2 28-JUL-10 2KKJ 1 JRNL REVDAT 1 30-JUN-10 2KKJ 0 JRNL AUTH M.KJAERGAARD,K.TEILUM,F.M.POULSEN JRNL TITL CONFORMATIONAL SELECTION IN THE MOLTEN GLOBULE STATE OF THE JRNL TITL 2 NUCLEAR COACTIVATOR BINDING DOMAIN OF CBP JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 12535 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20616042 JRNL DOI 10.1073/PNAS.1001693107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 31 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 % D2O-1, 20 MM SODIUM REMARK 210 CHLORIDE-2, 20 MM SODIUM REMARK 210 PHOSPHATE-3, 2 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN-4, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 PRO A 20 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 54.01 -92.37 REMARK 500 1 SER A 22 149.15 -171.01 REMARK 500 1 THR A 48 -82.68 66.44 REMARK 500 1 PRO A 56 48.30 -70.23 REMARK 500 2 THR A 48 -67.71 70.20 REMARK 500 2 ALA A 49 36.47 -172.18 REMARK 500 2 TYR A 51 -35.46 75.00 REMARK 500 2 ASN A 54 58.41 -97.12 REMARK 500 3 SER A 4 155.43 75.02 REMARK 500 3 PRO A 23 -19.80 -48.37 REMARK 500 3 ASN A 36 -44.89 -169.28 REMARK 500 3 PRO A 37 0.88 -47.59 REMARK 500 3 GLN A 38 -12.14 -44.29 REMARK 500 3 THR A 48 117.85 70.06 REMARK 500 3 ALA A 49 82.11 -68.30 REMARK 500 3 VAL A 52 -79.86 66.60 REMARK 500 3 ALA A 53 58.69 -90.51 REMARK 500 4 ARG A 3 49.84 -92.33 REMARK 500 4 ASN A 36 -43.34 -175.14 REMARK 500 4 PRO A 37 -2.28 -45.82 REMARK 500 4 GLN A 38 -12.34 -44.47 REMARK 500 4 THR A 48 125.34 80.06 REMARK 500 4 ALA A 49 47.20 -109.40 REMARK 500 4 LYS A 50 -66.20 -147.25 REMARK 500 4 VAL A 52 48.55 -86.21 REMARK 500 5 ASN A 2 -151.69 58.53 REMARK 500 5 ARG A 3 -38.12 76.21 REMARK 500 5 ASN A 36 78.93 -117.68 REMARK 500 5 THR A 48 85.60 29.64 REMARK 500 5 ALA A 49 91.26 -69.91 REMARK 500 5 LYS A 50 -81.90 -92.57 REMARK 500 5 ALA A 53 -177.16 62.41 REMARK 500 5 ASN A 54 30.06 -141.17 REMARK 500 6 ARG A 3 -47.38 -142.44 REMARK 500 6 SER A 21 44.33 -87.90 REMARK 500 6 THR A 48 -67.17 72.09 REMARK 500 6 ALA A 49 91.41 -178.32 REMARK 500 6 LYS A 50 -53.63 -120.48 REMARK 500 6 ALA A 53 -63.93 -127.94 REMARK 500 6 ASN A 54 -58.43 -159.75 REMARK 500 7 SER A 4 65.87 61.44 REMARK 500 7 PRO A 7 76.88 -22.17 REMARK 500 7 ARG A 47 107.40 59.42 REMARK 500 7 THR A 48 46.79 -78.42 REMARK 500 7 LYS A 50 88.35 67.48 REMARK 500 8 ARG A 3 -68.95 67.42 REMARK 500 8 LEU A 17 -6.50 -59.67 REMARK 500 8 LYS A 18 12.69 -65.73 REMARK 500 8 SER A 19 165.59 -43.06 REMARK 500 8 PRO A 20 76.41 9.24 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 18 SER A 19 9 -135.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KBH RELATED DB: PDB REMARK 900 LIGAND BOUND STRUCTURE REMARK 900 RELATED ID: 1JJS RELATED DB: PDB REMARK 900 ANOTHER LIGAND FREE STRUCTURE REMARK 900 RELATED ID: 2C52 RELATED DB: PDB REMARK 900 LIGAND BOUND STRUCTURE REMARK 900 RELATED ID: 1ZOQ RELATED DB: PDB REMARK 900 LIGAND BOUND STRUCTURE DBREF 2KKJ A 1 59 UNP P45481 CBP_MOUSE 2059 2117 SEQRES 1 A 59 PRO ASN ARG SER ILE SER PRO SER ALA LEU GLN ASP LEU SEQRES 2 A 59 LEU ARG THR LEU LYS SER PRO SER SER PRO GLN GLN GLN SEQRES 3 A 59 GLN GLN VAL LEU ASN ILE LEU LYS SER ASN PRO GLN LEU SEQRES 4 A 59 MET ALA ALA PHE ILE LYS GLN ARG THR ALA LYS TYR VAL SEQRES 5 A 59 ALA ASN GLN PRO GLY MET GLN HELIX 1 1 SER A 6 SER A 19 1 14 HELIX 2 2 PRO A 23 ASN A 36 1 14 HELIX 3 3 ASN A 36 ARG A 47 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1