data_2KKQ # _entry.id 2KKQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KKQ RCSB RCSB101241 BMRB 16370 WWPDB D_1000101241 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 16370 BMRB unspecified . HR3158 TargetDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KKQ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rossi, P.' 1 'Shastry, R.' 2 'Ciccosanti, C.' 3 'Hamilton, K.' 4 'Xiao, R.' 5 'Acton, T.B.' 6 'Swapna, G.V.T.' 7 'Nair, R.' 8 'Everett, J.K.' 9 'Rost, B.' 10 'Montelione, G.T.' 11 'Northeast Structural Genomics Consortium (NESG)' 12 # _citation.id primary _citation.title 'Solution NMR Structure of the Ig-like C2-type 2 Domain of Human Myotilin. Northeast Structural Genomics Target HR3158.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rossi, P.' 1 ? primary 'Montelione, G.T.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Myotilin _entity.formula_weight 13338.207 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Ig-like C2-type 2 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Titin immunoglobulin domain protein, Myofibrillar titin-like Ig domains protein, 57 kDa cytoskeletal protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV NKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV NKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR3158 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 GLU n 1 12 HIS n 1 13 LYS n 1 14 ARG n 1 15 ALA n 1 16 PRO n 1 17 MET n 1 18 PHE n 1 19 ILE n 1 20 TYR n 1 21 LYS n 1 22 PRO n 1 23 GLN n 1 24 SER n 1 25 LYS n 1 26 LYS n 1 27 VAL n 1 28 LEU n 1 29 GLU n 1 30 GLY n 1 31 ASP n 1 32 SER n 1 33 VAL n 1 34 LYS n 1 35 LEU n 1 36 GLU n 1 37 CYS n 1 38 GLN n 1 39 ILE n 1 40 SER n 1 41 ALA n 1 42 ILE n 1 43 PRO n 1 44 PRO n 1 45 PRO n 1 46 LYS n 1 47 LEU n 1 48 PHE n 1 49 TRP n 1 50 LYS n 1 51 ARG n 1 52 ASN n 1 53 ASN n 1 54 GLU n 1 55 MET n 1 56 VAL n 1 57 GLN n 1 58 PHE n 1 59 ASN n 1 60 THR n 1 61 ASP n 1 62 ARG n 1 63 ILE n 1 64 SER n 1 65 LEU n 1 66 TYR n 1 67 GLN n 1 68 ASP n 1 69 ASN n 1 70 THR n 1 71 GLY n 1 72 ARG n 1 73 VAL n 1 74 THR n 1 75 LEU n 1 76 LEU n 1 77 ILE n 1 78 LYS n 1 79 ASP n 1 80 VAL n 1 81 ASN n 1 82 LYS n 1 83 LYS n 1 84 ASP n 1 85 ALA n 1 86 GLY n 1 87 TRP n 1 88 TYR n 1 89 THR n 1 90 VAL n 1 91 SER n 1 92 ALA n 1 93 VAL n 1 94 ASN n 1 95 GLU n 1 96 ALA n 1 97 GLY n 1 98 VAL n 1 99 THR n 1 100 THR n 1 101 CYS n 1 102 ASN n 1 103 THR n 1 104 ARG n 1 105 LEU n 1 106 ASP n 1 107 VAL n 1 108 THR n 1 109 ALA n 1 110 ARG n 1 111 PRO n 1 112 ASN n 1 113 GLN n 1 114 THR n 1 115 LEU n 1 116 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MYOT, TTID' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET 14-15C' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYOTI_HUMAN _struct_ref.pdbx_db_accession Q9UBF9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV SAVNEAGVTTCNTRLDVTARPNQTLP ; _struct_ref.pdbx_align_begin 344 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KKQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UBF9 _struct_ref_seq.db_align_beg 344 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 449 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 11 _struct_ref_seq.pdbx_auth_seq_align_end 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KKQ MET A 1 ? UNP Q9UBF9 ? ? 'expression tag' 1 1 1 2KKQ GLY A 2 ? UNP Q9UBF9 ? ? 'expression tag' 2 2 1 2KKQ HIS A 3 ? UNP Q9UBF9 ? ? 'expression tag' 3 3 1 2KKQ HIS A 4 ? UNP Q9UBF9 ? ? 'expression tag' 4 4 1 2KKQ HIS A 5 ? UNP Q9UBF9 ? ? 'expression tag' 5 5 1 2KKQ HIS A 6 ? UNP Q9UBF9 ? ? 'expression tag' 6 6 1 2KKQ HIS A 7 ? UNP Q9UBF9 ? ? 'expression tag' 7 7 1 2KKQ HIS A 8 ? UNP Q9UBF9 ? ? 'expression tag' 8 8 1 2KKQ SER A 9 ? UNP Q9UBF9 ? ? 'expression tag' 9 9 1 2KKQ HIS A 10 ? UNP Q9UBF9 ? ? 'expression tag' 10 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D CBCA(CO)NH' 1 2 1 '3D HNCA' 1 3 1 '3D HNCACB' 1 4 1 '3D HBHA(CO)NH' 1 5 1 '3D HCCH-COSY' 1 6 1 '3D CCH-TOCSY' 1 7 1 '3D 1H-15N NOESY' 1 8 1 '3D 1H-13C NOESY' 1 9 1 '3D HNCO' 1 10 1 '3D HN(CA)CO' 1 11 1 '2D 1H-15N HSQC' 1 12 1 '2D 1H-13C HSQC' 1 13 2 '2D 1H-13C HSQC hires' 1 14 2 '2D 1H-15N het_NOE' 1 15 2 '1D 15N_T1 series' 1 16 2 '1D 15N_T2 series' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.2 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.87 mM [U-100% 13C; U-100% 15N] protein, 200 mM sodium chloride, 20 mM MES, 50 uM DSS, 10 mM DTT, 0.02 % sodium azide, 5 mM Calcium Chloride, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.68 mM [U-5% 13C] protein, 200 mM sodium chloride, 20 mM MES, 50 uM DSS, 10 mM DTT, 0.02 % sodium azide, 5 mM Calcium Chloride, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KKQ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;20 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA-3.0. SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH PARAM19). STRUCTURE BASED ON 2412 NOE, 230 DIHE. MAX NOE VIOLATION: 0.23 A (1MODEL); MAX DIHE VIOLATION: 8.1 DEG. 3 TOTAL CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR (PSVS 1.3): ORDERED RESIDUES RANGES: 11-112 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - BETA STRANDS: 25-28, 31-38, 46-51, 54-55, 63-67, 72-80, 86-94, 97-108 RMSD(ANG): BACKBONE 0.4, ALL HEAVY ATOMS 0.7. RAMA. DISTRIBUTION: 94.7/5.1/0.2/0.0. PROCHECK (PSI-PHI): -0.39/-1.22 (RAW/Z), PROCHECK (ALL): -0.23/-1.36 (RAW/Z), MOLPROBITY CLASH: 14.45/-1.01 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.892, PRECISION: 0.934, F-MEASURE: 0.913, DP-SCORE: 0.76. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2KKQ _pdbx_nmr_details.text ;MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING AND BY NMR. T1/T2(CPMG). CONSISTENT WITH MOLECULAR WEIGHT OF MONOMERIC UNIT. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA-3.0. ASSIGNMENT STATS (ALL RESIDUES INCLUDED): BACKBONE 90.16%, SIDECHAIN 76.91%, AROMATIC (SC) 100%, STEREOSPECIFIC VL METHYL ASSIGNMENT 100%, UNAMBIGUOUS SIDECHAIN NH2 100%. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KKQ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KKQ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 1 'Bruker Biospin' collection TopSpin 2.1 2 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.3 3 Goddard 'data analysis' Sparky 2.113 4 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 5 'Bahrami, Markley, Assadi, and Eghbalnia' 'data analysis' PINE ? 6 'Koradi, Billeter and Wuthrich' 'structure visualization' MOLMOL ? 7 'Bhattacharya and Montelione' 'structure validation' PSVS 1.3 8 'DeLano Scientific' 'structure visualization' PyMOL ? 9 'Tejero, Montelione' 'pdb processing' PdbStat 5.1 10 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Ig-like C2-type 2 Domain' _exptl.entry_id 2KKQ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KKQ _struct.title 'Solution NMR Structure of the Ig-like C2-type 2 Domain of Human Myotilin. Northeast Structural Genomics Target HR3158.' _struct.pdbx_descriptor Myotilin _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KKQ _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;unknown function, Actin-binding, Cell membrane, Cytoplasm, Cytoskeleton, Disease mutation, Immunoglobulin domain, Limb-girdle muscular dystrophy, Membrane, Muscle protein, Polymorphism, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 81 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 85 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 81 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 85 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 1 -0.83 2 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 2 -1.40 3 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 3 -3.29 4 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 4 -3.18 5 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 5 -2.67 6 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 6 -2.77 7 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 7 -0.61 8 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 8 -2.22 9 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 9 -1.60 10 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 10 -3.82 11 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 11 -1.46 12 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 12 -3.99 13 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 13 -0.77 14 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 14 -3.51 15 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 15 -2.91 16 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 16 -1.30 17 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 17 -2.57 18 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 18 -3.41 19 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 19 -3.90 20 ILE 42 A . ? ILE 42 A PRO 43 A ? PRO 43 A 20 -1.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 25 ? LEU A 28 ? LYS A 25 LEU A 28 A 2 GLY A 97 ? THR A 108 ? GLY A 97 THR A 108 A 3 GLY A 86 ? ASN A 94 ? GLY A 86 ASN A 94 A 4 LYS A 46 ? ARG A 51 ? LYS A 46 ARG A 51 A 5 GLU A 54 ? MET A 55 ? GLU A 54 MET A 55 B 1 ASP A 31 ? GLN A 38 ? ASP A 31 GLN A 38 B 2 ARG A 72 ? VAL A 80 ? ARG A 72 VAL A 80 B 3 ILE A 63 ? GLN A 67 ? ILE A 63 GLN A 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 25 ? N LYS A 25 O ASP A 106 ? O ASP A 106 A 2 3 O THR A 103 ? O THR A 103 N TYR A 88 ? N TYR A 88 A 3 4 O SER A 91 ? O SER A 91 N PHE A 48 ? N PHE A 48 A 4 5 N ARG A 51 ? N ARG A 51 O GLU A 54 ? O GLU A 54 B 1 2 N LEU A 35 ? N LEU A 35 O LEU A 75 ? O LEU A 75 B 2 3 O LEU A 76 ? O LEU A 76 N SER A 64 ? N SER A 64 # _atom_sites.entry_id 2KKQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 PRO 116 116 116 PRO PRO A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 0.87 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium chloride-2' 200 ? mM ? 1 MES-3 20 ? mM ? 1 DSS-4 50 ? uM ? 1 DTT-5 10 ? mM ? 1 'sodium azide-6' 0.02 ? % ? 1 'Calcium Chloride-7' 5 ? mM ? 1 protein-8 0.68 ? mM '[U-5% 13C]' 2 'sodium chloride-9' 200 ? mM ? 2 MES-10 20 ? mM ? 2 DSS-11 50 ? uM ? 2 DTT-12 10 ? mM ? 2 'sodium azide-13' 0.02 ? % ? 2 'Calcium Chloride-14' 5 ? mM ? 2 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 114 ? ? -58.50 100.40 2 2 HIS A 4 ? ? -52.11 101.95 3 2 SER A 9 ? ? -160.77 89.03 4 2 ASN A 53 ? ? 73.67 -14.21 5 2 LEU A 115 ? ? 66.91 151.06 6 3 HIS A 3 ? ? 65.71 -69.76 7 3 HIS A 4 ? ? 63.58 -79.38 8 3 HIS A 6 ? ? -84.36 47.16 9 3 HIS A 10 ? ? -152.86 69.59 10 3 GLU A 29 ? ? -56.83 108.98 11 3 ASN A 53 ? ? 79.57 -8.02 12 4 HIS A 3 ? ? -56.92 85.29 13 4 ASN A 53 ? ? 80.97 7.08 14 4 ASN A 59 ? ? -82.41 37.20 15 4 LEU A 115 ? ? 61.06 95.07 16 5 HIS A 4 ? ? 74.00 -7.30 17 5 HIS A 6 ? ? -53.65 97.96 18 5 ASN A 53 ? ? 75.89 -2.49 19 5 ASN A 59 ? ? -90.49 37.95 20 6 HIS A 4 ? ? -107.03 -61.15 21 6 HIS A 8 ? ? -68.10 85.71 22 8 SER A 9 ? ? -122.97 -163.26 23 8 ASN A 53 ? ? 76.36 -12.93 24 8 ASN A 59 ? ? -82.16 45.14 25 8 LEU A 115 ? ? 55.19 75.74 26 9 HIS A 5 ? ? 63.43 90.88 27 9 LEU A 115 ? ? 60.54 83.73 28 11 HIS A 8 ? ? -100.46 -160.35 29 12 HIS A 10 ? ? -149.87 10.86 30 12 ASN A 59 ? ? -84.03 37.18 31 13 HIS A 3 ? ? 70.22 -60.31 32 13 HIS A 5 ? ? -173.39 147.43 33 13 HIS A 8 ? ? -133.23 -155.69 34 13 SER A 9 ? ? 68.07 127.15 35 13 ASN A 53 ? ? 71.37 -4.92 36 13 LEU A 115 ? ? 60.97 107.90 37 14 HIS A 4 ? ? -69.88 3.11 38 14 HIS A 5 ? ? -55.47 96.46 39 14 HIS A 7 ? ? -67.86 78.86 40 14 ASN A 59 ? ? -95.32 32.08 41 15 LEU A 115 ? ? 61.20 100.60 42 16 HIS A 4 ? ? -57.50 107.32 43 16 HIS A 8 ? ? -178.87 143.39 44 16 GLU A 29 ? ? -57.04 105.65 45 16 ASN A 53 ? ? 71.80 -13.75 46 16 LEU A 115 ? ? 58.20 80.49 47 17 HIS A 6 ? ? -131.91 -89.18 48 17 ASN A 53 ? ? 73.61 -12.47 49 17 THR A 114 ? ? -126.41 -55.10 50 17 LEU A 115 ? ? 59.56 84.33 51 18 HIS A 3 ? ? -86.52 49.21 52 18 HIS A 8 ? ? -147.88 39.61 53 18 ASN A 59 ? ? -73.69 33.70 54 20 HIS A 6 ? ? -175.16 130.59 55 20 ASN A 59 ? ? -65.11 5.48 #