HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-09 2KL0 OBSLTE 24-AUG-11 2KL0 2LEK TITLE SOLUTION NMR STRUCTURE OF RHODOPSEUDOMONAS PALUSTRIS RPA3574, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET RPR325 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIAMIN BIOSYNTHESIS THIS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA3574, THIS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS PUTATIVE THIAMIN BIOSYNTHESIS THIS (HAS UBQ / B-GRASP FOLD), KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JANG,R.NAIR,B.ROST, AUTHOR 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 24-AUG-11 2KL0 1 OBSLTE VERSN REVDAT 3 23-JUN-10 2KL0 1 AUTHOR JRNL REVDAT 2 26-JAN-10 2KL0 1 TITLE REVDAT 1 22-SEP-09 2KL0 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JANG,R.NAIR, JRNL AUTH 2 B.ROST,G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL RPR325/RPA3574 FROM RHODOPSEUDOMONAS PALUSTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ORIGINAL NOE ASSGNMENTS WERE DONE WITH REMARK 3 CYANA. THIS NOE RESTRAINTS LIST WAS REFINED USING ITERATIVE REMARK 3 CYCLES OF XPLOR-NIH STANDALONE, AND XPLOR+HB AND CNSW REFINEMENT. REMARK 4 REMARK 4 2KL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101251. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92 MM [U-100% 13C; U-100% 15N] REMARK 210 RPA3574, 20 MM MES, 200 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 0.85 MM [U-5% 13C; U-99% REMARK 210 15N] RPA3574, 20 MM MES, 200 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.3, NMRPIPE 2008, REMARK 210 VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR_NIH, REMARK 210 SPARKY 3.113, PSVS, PDBSTAT 5.1, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: D NHSQC ESTIMATION OF DYNAMICS: T1 = 423 +/- 39 MS, T1RHO REMARK 210 = 94 +/- 4 MS, TC= 5.9 +/- 0.4 NS (EXPECTED 5NS AT 20 DEGREES) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 27 -174.78 53.06 REMARK 500 1 HIS A 30 31.46 -71.34 REMARK 500 1 ALA A 52 106.97 -54.83 REMARK 500 1 GLU A 67 77.83 -100.53 REMARK 500 1 HIS A 68 116.04 55.59 REMARK 500 2 ALA A 52 102.39 -51.43 REMARK 500 2 PRO A 61 -85.86 -83.72 REMARK 500 2 GLN A 63 -72.98 -105.87 REMARK 500 2 HIS A 70 126.43 -172.45 REMARK 500 2 HIS A 71 17.38 -155.12 REMARK 500 3 THR A 27 -106.61 47.72 REMARK 500 3 ALA A 52 106.37 -58.85 REMARK 500 3 THR A 60 78.88 -152.76 REMARK 500 3 ARG A 62 149.47 60.17 REMARK 500 4 ARG A 42 -4.47 -58.80 REMARK 500 4 HIS A 68 108.73 -48.49 REMARK 500 4 HIS A 69 104.70 -162.23 REMARK 500 4 HIS A 71 -129.68 39.38 REMARK 500 5 THR A 27 -136.43 46.90 REMARK 500 5 TYR A 37 45.65 77.28 REMARK 500 6 GLN A 13 48.32 -146.56 REMARK 500 6 ALA A 15 -9.72 60.76 REMARK 500 6 THR A 27 97.96 52.96 REMARK 500 6 PRO A 61 -80.92 -70.18 REMARK 500 6 ARG A 62 25.51 49.04 REMARK 500 6 GLN A 63 -76.63 -83.08 REMARK 500 6 HIS A 68 77.81 46.91 REMARK 500 7 ASP A 25 29.95 48.20 REMARK 500 7 THR A 27 161.91 56.50 REMARK 500 7 HIS A 30 16.66 55.99 REMARK 500 7 ALA A 52 101.88 -58.17 REMARK 500 7 ARG A 62 123.05 57.19 REMARK 500 7 GLN A 63 -79.67 -71.47 REMARK 500 7 LEU A 66 93.13 37.44 REMARK 500 7 GLU A 67 -91.92 -62.34 REMARK 500 8 TYR A 37 50.64 70.39 REMARK 500 8 ALA A 52 102.07 -56.67 REMARK 500 8 HIS A 68 -28.31 -174.50 REMARK 500 9 CYS A 26 34.51 -87.40 REMARK 500 9 HIS A 30 57.07 -97.21 REMARK 500 9 ARG A 62 59.44 70.62 REMARK 500 9 HIS A 68 94.10 52.98 REMARK 500 10 THR A 27 -41.74 -151.07 REMARK 500 10 HIS A 30 -4.36 64.08 REMARK 500 10 ALA A 52 103.85 -58.99 REMARK 500 10 THR A 60 79.80 -153.02 REMARK 500 10 ARG A 62 80.15 43.49 REMARK 500 10 HIS A 68 166.97 53.16 REMARK 500 10 HIS A 72 -76.27 57.02 REMARK 500 11 ASP A 25 29.48 49.12 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RPR325 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16377 RELATED DB: BMRB DBREF 2KL0 A 1 65 UNP Q6N3W8 Q6N3W8_RHOPA 1 65 SEQADV 2KL0 LEU A 66 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 GLU A 67 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 68 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 69 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 70 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 71 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 72 UNP Q6N3W8 EXPRESSION TAG SEQADV 2KL0 HIS A 73 UNP Q6N3W8 EXPRESSION TAG SEQRES 1 A 73 MET LEU VAL THR ILE ASN GLY GLU GLN ARG GLU VAL GLN SEQRES 2 A 73 SER ALA SER VAL ALA ALA LEU MET THR GLU LEU ASP CYS SEQRES 3 A 73 THR GLY GLY HIS PHE ALA VAL ALA LEU ASN TYR ASP VAL SEQRES 4 A 73 VAL PRO ARG GLY LYS TRP ASP GLU THR PRO VAL THR ALA SEQRES 5 A 73 GLY ASP GLU ILE GLU ILE LEU THR PRO ARG GLN GLY GLY SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 16 LEU A 24 1 9 HELIX 2 2 PRO A 41 ASP A 46 1 6 SHEET 1 A 5 GLU A 8 ARG A 10 0 SHEET 2 A 5 VAL A 3 ILE A 5 -1 N ILE A 5 O GLU A 8 SHEET 3 A 5 GLU A 55 LEU A 59 1 O ILE A 56 N THR A 4 SHEET 4 A 5 ALA A 32 LEU A 35 -1 N ALA A 32 O LEU A 59 SHEET 5 A 5 VAL A 39 VAL A 40 -1 O VAL A 40 N VAL A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1