HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-09 2KL3 TITLE SOLUTION NMR STRUCTURE OF THE RHODANESE-LIKE DOMAIN FROM ANABAENA SP TITLE 2 ALR3790 PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 NSR437A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALR3790 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RHODANESE-LIKE DOMAIN SEQUENCE DATABASE RESIDUES 17-139; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP.; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120; SOURCE 5 GENE: ALR3790; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS ALPHA+BETA, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,R.L.BELOTE,C.CICCOSANTI,H.JANJUA,R.NAIR,B.ROST, AUTHOR 2 G.V.T.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,H.LEE,J.H.PRESTEGARD, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 2 13-JUL-11 2KL3 1 VERSN REVDAT 1 11-AUG-09 2KL3 0 JRNL AUTH A.ELETSKY,R.L.BELOTE,C.CICCOSANTI,H.JANJUA,R.NAIR,B.ROST, JRNL AUTH 2 G.V.T.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,H.LEE, JRNL AUTH 3 J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF THE RHODANESE-LIKE DOMAIN FROM JRNL TITL 2 ANABAENA SP ALR3790 PROTEIN. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET NSR437A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA AND AUTOSTRUCTURE USING NOE-BASED REMARK 3 CONSTRAINTS, PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS, REMARK 3 HYDROGEN BOND CONSTRAINTS BASED ON PRELIMINARY STRUCTURES AND REMARK 3 CLEANEX DATA, AND RDCS FROM TWO ALIGNMENT MEDIA. THE 20 REMARK 3 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE REMARK 3 FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH REMARK 3 USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2KL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101254. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 200; 150; 160 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 NSR437A, 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 50 UM DSS, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 1 MM [U-2% 13C; REMARK 210 U-100% 15N] NSR437A, 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 50 UM DSS, 0.02 REMARK 210 % SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.7 MM [U-2% 13C; U-100% 15N] REMARK 210 NSR437A, 14.4 MM MES, 144 MM REMARK 210 SODIUM CHLORIDE, 3.6 MM CALCIUM REMARK 210 CHLORIDE, 36 UM DSS, 0.014 % REMARK 210 SODIUM AZIDE, 13.25 G/L PF1 REMARK 210 PHAGE, 87% H2O/13% D2O; 0.7 MM [U REMARK 210 -2% 13C; U-100% 15N] NSR437A, 16 REMARK 210 MM MES-21, 160 MM SODIUM REMARK 210 CHLORIDE, 4 MM CALCIUM CHLORIDE- REMARK 210 23, 40 UM DSS, 0.016 % SODIUM REMARK 210 AZIDE, 4.2 % PEG, 88% H2O/12% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 15N T1; 1D 15N T2; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C CT-HSQC ALIPHATIC; 2D REMARK 210 1H-13C CT-HSQC AROMATIC; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D (H)CCH- REMARK 210 TOCSY ALIPHATIC; 3D (H)CCH-COSY REMARK 210 ALIPHATIC; 3D (H)CCH-COSY REMARK 210 AROMATIC; 3D 1H-15N/13C NOESY; 2D REMARK 210 1H-15N HSQC LONG-RANGE (HIS); 2D REMARK 210 1H-13C CT-HSQC METHYL; 2D 1H-15N REMARK 210 TROSY; 2D CLEANEX REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ 2.1B, PROSA 6.4, CARA REMARK 210 1.8.4, ANALYSIS 2.0.7, PINE, REMARK 210 CYANA 3.0, AUTOSTRUCTURE, TALOS REMARK 210 2007.068.09.07, PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 19 -88.58 -64.54 REMARK 500 1 ALA A 20 22.20 48.77 REMARK 500 1 SER A 55 -60.12 -131.99 REMARK 500 1 ASP A 61 95.25 -66.86 REMARK 500 1 PRO A 113 97.46 -59.43 REMARK 500 1 TYR A 119 86.40 -150.76 REMARK 500 1 ARG A 124 111.46 -167.56 REMARK 500 1 HIS A 130 102.56 67.88 REMARK 500 2 PHE A 84 108.27 -50.63 REMARK 500 2 GLU A 109 86.17 -67.46 REMARK 500 2 SER A 110 -58.76 -159.35 REMARK 500 2 THR A 112 35.17 -140.30 REMARK 500 2 PRO A 113 83.99 -65.03 REMARK 500 2 ASP A 117 124.60 -175.11 REMARK 500 2 TYR A 119 90.51 179.36 REMARK 500 2 HIS A 127 115.21 -162.34 REMARK 500 2 HIS A 129 119.96 -166.44 REMARK 500 2 HIS A 130 21.33 -146.96 REMARK 500 3 PRO A 19 46.50 -73.01 REMARK 500 3 SER A 55 -58.59 -125.97 REMARK 500 3 PRO A 113 -125.44 -75.24 REMARK 500 3 ALA A 114 160.62 176.47 REMARK 500 3 ASN A 120 90.75 -69.78 REMARK 500 3 SER A 123 104.14 -174.44 REMARK 500 3 ARG A 124 113.24 -160.86 REMARK 500 4 GLU A 2 153.33 68.07 REMARK 500 4 PRO A 19 36.65 -75.12 REMARK 500 4 ARG A 27 -71.33 -63.43 REMARK 500 4 ASP A 28 149.92 -173.27 REMARK 500 4 SER A 55 -58.81 -135.26 REMARK 500 4 VAL A 122 89.88 -65.87 REMARK 500 4 SER A 123 -75.68 -71.52 REMARK 500 4 ARG A 124 103.25 58.42 REMARK 500 4 HIS A 130 -156.32 -93.93 REMARK 500 5 PRO A 19 37.91 -74.15 REMARK 500 5 ALA A 42 -106.63 -71.99 REMARK 500 5 MET A 43 75.17 60.96 REMARK 500 5 SER A 55 15.49 -142.54 REMARK 500 5 ASP A 61 95.71 -67.45 REMARK 500 5 GLU A 109 -4.95 -59.93 REMARK 500 5 ALA A 116 116.42 -170.94 REMARK 500 5 TYR A 119 30.29 -96.32 REMARK 500 5 GLU A 126 134.37 -172.47 REMARK 500 5 HIS A 127 45.91 -168.23 REMARK 500 5 HIS A 131 81.48 -153.27 REMARK 500 6 PRO A 19 40.66 -82.23 REMARK 500 6 HIS A 130 26.98 -149.01 REMARK 500 7 ALA A 20 18.50 -156.10 REMARK 500 7 ARG A 27 -73.52 -67.84 REMARK 500 7 PHE A 84 108.48 -55.46 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NSR437A RELATED DB: TARGETDB DBREF 2KL3 A 2 124 UNP Q8YQN0 Q8YQN0_ANASP 17 139 SEQADV 2KL3 MET A 1 UNP Q8YQN0 INITIATING METHIONINE SEQADV 2KL3 LEU A 125 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 GLU A 126 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 127 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 128 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 129 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 130 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 131 UNP Q8YQN0 EXPRESSION TAG SEQADV 2KL3 HIS A 132 UNP Q8YQN0 EXPRESSION TAG SEQRES 1 A 132 MET GLU PRO GLN SER ASP ALA HIS VAL LEU LYS SER ARG SEQRES 2 A 132 LEU GLU TRP GLY GLU PRO ALA PHE THR ILE LEU ASP VAL SEQRES 3 A 132 ARG ASP ARG SER THR TYR ASN ASP GLY HIS ILE MET GLY SEQRES 4 A 132 ALA MET ALA MET PRO ILE GLU ASP LEU VAL ASP ARG ALA SEQRES 5 A 132 SER SER SER LEU GLU LYS SER ARG ASP ILE TYR VAL TYR SEQRES 6 A 132 GLY ALA GLY ASP GLU GLN THR SER GLN ALA VAL ASN LEU SEQRES 7 A 132 LEU ARG SER ALA GLY PHE GLU HIS VAL SER GLU LEU LYS SEQRES 8 A 132 GLY GLY LEU ALA ALA TRP LYS ALA ILE GLY GLY PRO THR SEQRES 9 A 132 GLU GLY ILE ILE GLU SER ARG THR PRO ALA GLY ALA ASP SEQRES 10 A 132 ASP TYR ASN VAL VAL SER ARG LEU GLU HIS HIS HIS HIS SEQRES 11 A 132 HIS HIS HELIX 1 1 ALA A 7 TRP A 16 1 10 HELIX 2 2 ASP A 28 GLY A 35 1 8 HELIX 3 3 ASP A 47 LEU A 56 1 10 HELIX 4 4 GLY A 68 ALA A 82 1 15 HELIX 5 5 GLY A 92 ILE A 100 1 9 SHEET 1 A 5 GLN A 4 ASP A 6 0 SHEET 2 A 5 VAL A 87 LYS A 91 1 O GLU A 89 N SER A 5 SHEET 3 A 5 ASP A 61 TYR A 65 1 N ILE A 62 O SER A 88 SHEET 4 A 5 PHE A 21 ASP A 25 1 N THR A 22 O ASP A 61 SHEET 5 A 5 MET A 41 ALA A 42 1 O MET A 41 N ASP A 25 SHEET 1 B 2 HIS A 36 ILE A 37 0 SHEET 2 B 2 THR A 104 GLU A 105 -1 O GLU A 105 N HIS A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1