HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-09 2KL4 TITLE NMR STRUCTURE OF THE PROTEIN NB7804A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH2032 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 GENE: BH2032; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PSPEEDT KEYWDS NB7804A, BACILLUS HALODURANS, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MOHANTY,M.GERALT,W.AUGUSTYNIAK,P.SERRANO,R.HORST,I.A.WILSON, AUTHOR 2 K.WUTHRICH,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 2KL4 1 SEQADV REVDAT 3 16-MAR-22 2KL4 1 REMARK REVDAT 2 21-JUL-09 2KL4 1 REMARK REVDAT 1 14-JUL-09 2KL4 0 JRNL AUTH B.MOHANTY,M.GERALT,W.AUGUSTYNIAK,P.SERRANO,R.HORST, JRNL AUTH 2 I.A.WILSON,K.WUTHRICH JRNL TITL SOLUTION STRUCTURE OF THE PROTEIN NB7804A FROM BACILLUS JRNL TITL 2 HALODURANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UNIO 1.0.2, OPAL REMARK 3 AUTHORS : HERRMANN AND WUTHRICH (UNIO), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OPALP FOR ENERGY MINIMIZATION REMARK 4 REMARK 4 2KL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101255. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.0045 M [U-2H] D10-DTT, 0.025 M REMARK 210 SODIUM PHOSPHATE, 0.050 M SODIUM REMARK 210 CHLORIDE, 0.03 % SODIUM AZIDE, REMARK 210 0.0005 M DTT, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D [15N,1H]-HSQC; 2D [13C,1H] REMARK 210 -HSQC; 4D-APSY-HACANH; 5D-APSY- REMARK 210 HACACONH; 5D-APSY-CBCACONH; 3D REMARK 210 15N-RESOLVED [1H,1H]-NOESY; 3D REMARK 210 13C-RESOLVED [1H,1H]-NOESY REMARK 210 (ALIPHATIC 13C); 3D 13C-RESOLVED REMARK 210 [1H,1H]-NOESY (AROMATIC 13C) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO 1.0.2, CARA, TOPSPIN 1.3, REMARK 210 TOPSPIN 2.1, MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CYANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 103 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 13 TYR A 103 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 14 VAL A 30 CA - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 15 HIS A 102 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 16 VAL A 30 CA - CB - CG2 ANGL. DEV. = 10.9 DEGREES REMARK 500 16 PHE A 58 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 18 HIS A 64 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 20 VAL A 30 CA - CB - CG2 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -31.88 -150.57 REMARK 500 1 HIS A 16 73.83 -116.60 REMARK 500 1 ALA A 31 3.51 -68.78 REMARK 500 1 TRP A 43 16.68 55.52 REMARK 500 1 HIS A 63 7.49 -159.28 REMARK 500 1 SER A 68 144.91 -171.26 REMARK 500 1 GLU A 70 -83.77 -148.03 REMARK 500 1 GLU A 71 -46.38 -131.50 REMARK 500 1 SER A 75 -72.59 -91.14 REMARK 500 1 THR A 89 -168.73 -118.96 REMARK 500 2 HIS A 3 -39.99 -156.94 REMARK 500 2 ASN A 44 14.69 53.42 REMARK 500 2 GLN A 51 15.17 51.48 REMARK 500 2 PHE A 54 29.56 -66.62 REMARK 500 2 GLU A 70 -88.44 -138.16 REMARK 500 2 GLU A 71 -36.15 -147.34 REMARK 500 2 SER A 87 105.58 -44.62 REMARK 500 2 HIS A 102 73.66 -109.92 REMARK 500 3 HIS A 3 -31.13 -147.27 REMARK 500 3 HIS A 16 69.30 -116.13 REMARK 500 3 ASN A 36 33.20 -86.22 REMARK 500 3 GLN A 40 114.18 -162.84 REMARK 500 3 GLN A 51 -3.32 57.21 REMARK 500 3 GLU A 70 -83.20 -148.48 REMARK 500 3 GLU A 71 -27.97 -146.97 REMARK 500 3 SER A 75 -71.56 -84.80 REMARK 500 3 SER A 87 98.40 -53.28 REMARK 500 3 THR A 89 -164.77 -111.15 REMARK 500 4 HIS A 3 -33.15 -138.95 REMARK 500 4 HIS A 19 -30.72 -132.60 REMARK 500 4 ASN A 44 17.90 57.67 REMARK 500 4 GLN A 51 18.14 48.80 REMARK 500 4 THR A 53 -167.98 -78.12 REMARK 500 4 GLU A 70 -86.34 -147.23 REMARK 500 4 GLU A 71 -32.97 -145.90 REMARK 500 4 VAL A 101 9.69 -68.60 REMARK 500 4 HIS A 102 81.56 43.76 REMARK 500 5 HIS A 3 -37.82 -159.14 REMARK 500 5 ILE A 14 95.61 -65.22 REMARK 500 5 HIS A 16 75.89 -105.63 REMARK 500 5 HIS A 19 15.91 -145.09 REMARK 500 5 ALA A 32 -34.83 -140.21 REMARK 500 5 TRP A 43 16.26 55.73 REMARK 500 5 ILE A 55 8.58 -67.75 REMARK 500 5 GLU A 70 -86.25 -134.81 REMARK 500 5 GLU A 71 -30.84 -136.96 REMARK 500 5 SER A 75 -80.22 -97.47 REMARK 500 5 THR A 89 -164.35 -103.23 REMARK 500 6 HIS A 3 -42.32 -136.99 REMARK 500 6 ILE A 14 108.74 -54.75 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 86 0.07 SIDE CHAIN REMARK 500 2 HIS A 19 0.11 SIDE CHAIN REMARK 500 5 TYR A 10 0.10 SIDE CHAIN REMARK 500 5 TYR A 86 0.09 SIDE CHAIN REMARK 500 5 ARG A 94 0.10 SIDE CHAIN REMARK 500 7 TYR A 10 0.09 SIDE CHAIN REMARK 500 7 ARG A 20 0.12 SIDE CHAIN REMARK 500 7 ARG A 22 0.08 SIDE CHAIN REMARK 500 9 HIS A 19 0.10 SIDE CHAIN REMARK 500 9 TYR A 86 0.10 SIDE CHAIN REMARK 500 12 ARG A 22 0.09 SIDE CHAIN REMARK 500 12 TYR A 86 0.07 SIDE CHAIN REMARK 500 14 PHE A 34 0.08 SIDE CHAIN REMARK 500 14 TYR A 86 0.07 SIDE CHAIN REMARK 500 14 ARG A 94 0.12 SIDE CHAIN REMARK 500 15 HIS A 102 0.18 SIDE CHAIN REMARK 500 16 PHE A 34 0.09 SIDE CHAIN REMARK 500 18 TYR A 10 0.07 SIDE CHAIN REMARK 500 18 ARG A 94 0.09 SIDE CHAIN REMARK 500 19 TYR A 10 0.08 SIDE CHAIN REMARK 500 19 HIS A 19 0.09 SIDE CHAIN REMARK 500 20 HIS A 19 0.09 SIDE CHAIN REMARK 500 20 PHE A 34 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367516 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16383 RELATED DB: BMRB DBREF 2KL4 A 4 118 UNP Q9KB96 Q9KB96_BACHD 1 115 SEQADV 2KL4 GLY A 1 UNP Q9KB96 EXPRESSION TAG SEQADV 2KL4 SER A 2 UNP Q9KB96 EXPRESSION TAG SEQADV 2KL4 HIS A 3 UNP Q9KB96 EXPRESSION TAG SEQRES 1 A 118 GLY SER HIS MET GLU VAL PHE ALA GLU TYR LEU LYS GLY SEQRES 2 A 118 ILE ASP HIS PRO ASP HIS ARG ASP ARG THR GLU GLU ILE SEQRES 3 A 118 LEU SER TRP VAL ALA ALA THR PHE PRO ASN LEU GLU PRO SEQRES 4 A 118 GLN MET LYS TRP ASN THR PRO MET PHE SER ASN GLN GLY SEQRES 5 A 118 THR PHE ILE ILE GLY PHE SER THR SER LYS HIS HIS LEU SEQRES 6 A 118 SER VAL SER PRO GLU GLU ILE GLY ILE SER GLN PHE ALA SEQRES 7 A 118 ASP ALA ILE ALA GLN ALA GLY TYR SER ALA THR LYS GLY SEQRES 8 A 118 LEU PHE ARG ILE PRO TRP ASN ASP PRO VAL HIS TYR GLU SEQRES 9 A 118 LEU LEU LYS GLN MET ILE GLU PHE ASN ILE GLN ASP LYS SEQRES 10 A 118 GLU HELIX 1 1 HIS A 3 ALA A 8 1 6 HELIX 2 2 GLU A 9 ILE A 14 1 6 HELIX 3 3 HIS A 16 ASP A 18 5 3 HELIX 4 4 HIS A 19 PHE A 34 1 16 HELIX 5 5 GLU A 71 GLN A 76 1 6 HELIX 6 6 PHE A 77 GLY A 85 1 9 HELIX 7 7 HIS A 102 LYS A 117 1 16 SHEET 1 A 6 GLU A 38 LYS A 42 0 SHEET 2 A 6 THR A 45 SER A 49 -1 O THR A 45 N LYS A 42 SHEET 3 A 6 ILE A 56 THR A 60 -1 O PHE A 58 N PRO A 46 SHEET 4 A 6 HIS A 64 SER A 68 -1 O SER A 66 N SER A 59 SHEET 5 A 6 PHE A 93 PRO A 96 -1 O PHE A 93 N VAL A 67 SHEET 6 A 6 SER A 87 ALA A 88 -1 N SER A 87 O ARG A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1