HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-09 2KL5 TITLE SOLUTION NMR STRUCTURE OF PROTEIN YUTD FROM B.SUBTILIS, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR232 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YUTD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU32310, YUTD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS STRUCTURAL GENOMICS, PROTEIN NMR, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM (NESG), TARGET SR232, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,K.HAMILTON,R.XIAO,C.CICCOSANTI,C.J.HO,J.EVERETT,R.NAIR,T.ACTON, AUTHOR 2 B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 14-JUN-23 2KL5 1 REMARK REVDAT 3 26-FEB-20 2KL5 1 REMARK SEQADV REVDAT 2 01-JUN-11 2KL5 1 AUTHOR JRNL REVDAT 1 14-JUL-09 2KL5 0 JRNL AUTH G.LIU,K.HAMILTON,R.XIAO,C.CICCOSANTI,C.HO,E.K.EVERETT, JRNL AUTH 2 R.NAIR,A.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN YUTD FROM B.SUBTILIS, JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TARGET SR232 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101256. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 SR232, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 81.60 -42.71 REMARK 500 1 GLU A 10 -86.00 -169.10 REMARK 500 1 PHE A 30 97.47 -69.95 REMARK 500 1 ASP A 47 -0.11 72.41 REMARK 500 1 ASP A 65 109.39 -52.28 REMARK 500 1 TYR A 87 -75.11 -106.03 REMARK 500 1 ARG A 101 35.71 -75.90 REMARK 500 1 HIS A 106 82.60 -69.83 REMARK 500 1 HIS A 108 90.41 -66.35 REMARK 500 2 ASP A 65 107.76 -58.47 REMARK 500 2 ALA A 71 -91.57 -172.62 REMARK 500 2 PHE A 73 -104.22 -121.13 REMARK 500 2 GLU A 74 15.86 45.38 REMARK 500 2 PHE A 90 146.29 -173.41 REMARK 500 2 LYS A 102 -172.33 -175.05 REMARK 500 2 HIS A 106 -26.19 72.07 REMARK 500 3 MET A 4 -80.19 -73.40 REMARK 500 3 SER A 5 142.81 179.93 REMARK 500 3 GLN A 69 -146.71 -159.86 REMARK 500 3 LYS A 70 81.03 -67.43 REMARK 500 3 ALA A 71 -156.70 -70.82 REMARK 500 3 TYR A 87 -78.57 -98.71 REMARK 500 3 PHE A 90 -162.42 -113.11 REMARK 500 3 LEU A 103 110.47 -173.95 REMARK 500 4 GLU A 10 -76.17 -155.19 REMARK 500 4 GLU A 74 33.92 -80.87 REMARK 500 4 THR A 75 -81.07 -152.89 REMARK 500 4 ARG A 101 13.90 57.84 REMARK 500 5 ASP A 47 11.09 48.26 REMARK 500 5 GLN A 67 -73.39 68.08 REMARK 500 5 ASN A 68 -77.25 53.69 REMARK 500 5 ALA A 71 140.72 66.63 REMARK 500 5 TYR A 87 -84.81 -80.20 REMARK 500 5 PHE A 90 98.39 -44.81 REMARK 500 5 ARG A 101 58.42 -90.15 REMARK 500 5 LEU A 103 143.67 175.38 REMARK 500 6 SER A 5 104.21 -57.00 REMARK 500 6 LYS A 7 -61.20 -133.11 REMARK 500 6 ARG A 8 29.50 -164.56 REMARK 500 6 GLU A 10 -60.51 -159.97 REMARK 500 6 GLN A 16 99.90 -43.03 REMARK 500 6 ASP A 47 -0.69 72.61 REMARK 500 6 ASP A 66 -88.10 -121.46 REMARK 500 6 GLN A 69 96.33 -65.60 REMARK 500 6 LYS A 70 27.55 -140.27 REMARK 500 6 ALA A 71 99.95 65.14 REMARK 500 6 THR A 72 -168.28 -178.11 REMARK 500 6 GLU A 74 156.41 69.34 REMARK 500 6 THR A 75 15.93 52.12 REMARK 500 6 PHE A 90 -65.46 -152.15 REMARK 500 REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16384 RELATED DB: BMRB REMARK 900 RELATED ID: SR232 RELATED DB: TARGETDB DBREF 2KL5 A 12 102 UNP O32127 O32127_BACSU 1 91 SEQADV 2KL5 MET A 1 UNP O32127 EXPRESSION TAG SEQADV 2KL5 ILE A 2 UNP O32127 EXPRESSION TAG SEQADV 2KL5 GLY A 3 UNP O32127 EXPRESSION TAG SEQADV 2KL5 MET A 4 UNP O32127 EXPRESSION TAG SEQADV 2KL5 SER A 5 UNP O32127 EXPRESSION TAG SEQADV 2KL5 GLU A 6 UNP O32127 EXPRESSION TAG SEQADV 2KL5 LYS A 7 UNP O32127 EXPRESSION TAG SEQADV 2KL5 ARG A 8 UNP O32127 EXPRESSION TAG SEQADV 2KL5 GLY A 9 UNP O32127 EXPRESSION TAG SEQADV 2KL5 GLU A 10 UNP O32127 EXPRESSION TAG SEQADV 2KL5 ILE A 11 UNP O32127 EXPRESSION TAG SEQADV 2KL5 LEU A 103 UNP O32127 EXPRESSION TAG SEQADV 2KL5 GLU A 104 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 105 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 106 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 107 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 108 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 109 UNP O32127 EXPRESSION TAG SEQADV 2KL5 HIS A 110 UNP O32127 EXPRESSION TAG SEQRES 1 A 110 MET ILE GLY MET SER GLU LYS ARG GLY GLU ILE MET ILE SEQRES 2 A 110 LEU ILE GLN ASN ALA GLU PHE GLU LEU VAL HIS ASN PHE SEQRES 3 A 110 LYS ASP GLY PHE ASN GLU GLU ALA PHE LYS ALA ARG TYR SEQRES 4 A 110 SER ASP ILE LEU ASN LYS TYR ASP TYR ILE VAL GLY ASP SEQRES 5 A 110 TRP GLY TYR GLY GLN LEU ARG LEU LYS GLY PHE PHE ASP SEQRES 6 A 110 ASP GLN ASN GLN LYS ALA THR PHE GLU THR LYS ILE SER SEQRES 7 A 110 THR LEU ASP GLU TYR ILE TYR GLU TYR CYS ASN PHE GLY SEQRES 8 A 110 CYS ALA TYR PHE VAL LEU LYS ARG ILE ARG LYS LEU GLU SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 31 TYR A 39 1 9 HELIX 2 2 SER A 40 TYR A 46 5 7 HELIX 3 3 THR A 79 TYR A 87 1 9 SHEET 1 A 5 MET A 12 ILE A 15 0 SHEET 2 A 5 ALA A 18 PHE A 26 -1 O ALA A 18 N ILE A 15 SHEET 3 A 5 TYR A 94 ARG A 99 -1 O VAL A 96 N HIS A 24 SHEET 4 A 5 TYR A 48 ASP A 52 -1 N ILE A 49 O LEU A 97 SHEET 5 A 5 ARG A 59 GLY A 62 -1 O ARG A 59 N ASP A 52 SSBOND 1 CYS A 88 CYS A 92 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1