HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-09 2KLC TITLE NMR SOLUTION STRUCTURE OF HUMAN UBIQUITIN-LIKE DOMAIN OF UBIQUILIN 1, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HT5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUILIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN: RESIDUES 34-112; COMPND 5 SYNONYM: PROTEIN LINKING IAP WITH CYTOSKELETON 1, PLIC-1, HPLIC-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DA41, PLIC1, UBQLN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P15TV LIC KEYWDS UBIQUITIN-LIKE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC, PROTEIN BINDING, UBL, ONTARIO KEYWDS 4 CENTRE FOR STRUCTURAL PROTEOMICS, OCSP, PROTEASOME, UBIQUITIN KEYWDS 5 LIGASE-ASSOCIATED, UBIQUITINATION, PROTEIN DEGRADATION, ALZHEIMER'S, KEYWDS 6 NUCLEUS, PHOSPHOPROTEIN, UNKNOWN FUNCTION, ONTARIO CENTRE FOR KEYWDS 7 STRUCTURAL PROTEOMICS (OCSP) EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.S.DOHERTY,S.DHE-PAGANON,C.FARES,S.LEMAK,A.GUTMANAS,M.GARCIA,A.YEE, AUTHOR 2 G.T.MONTELIONE,C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG),STRUCTURAL GENOMICS CONSORTIUM (SGC),ONTARIO AUTHOR 4 CENTRE FOR STRUCTURAL PROTEOMICS (OCSP) REVDAT 3 26-FEB-20 2KLC 1 REMARK SEQADV REVDAT 2 18-JAN-12 2KLC 1 REMARK VERSN REVDAT 1 14-JUL-09 2KLC 0 JRNL AUTH R.S.DOHERTY,S.DHE-PAGANON,C.FARES,S.LEMAK,A.GUTMANAS, JRNL AUTH 2 M.GARCIA,A.YEE,G.T.MONTELIONE,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF UBIQUILIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.106, CNSSOLVE 1.1 REMARK 3 AUTHORS : GODDARD (SPARKY), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101263. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] UBIQUILIN REMARK 210 1, 10 MM TRIS, 300 MM SODIUM REMARK 210 CHLORIDE (NACL), 0.01 % SODIUM REMARK 210 AZIDE (NAN3), 1 X INHIBITOR REMARK 210 COCKTAIL (ROCHE), 1 MM REMARK 210 BENZAMIDINE, 10 UM ZNSO4, 10 MM REMARK 210 DTT, 10 % D20, 90 % H20, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D 1H-13C_AROM REMARK 210 NOESY; 2D 1H-15 HSQC (IPAP); 2D REMARK 210 1H-15N HSQC; 2D 1H-13C CONSTANT REMARK 210 TIME HSQC; 3D HBHA(CO)NH; 3D REMARK 210 HNCO (IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, FMC, TALOS REMARK 210 2003.027.13.05, CYANA 2.1, REMARK 210 TOPSPIN, PSVS 1.3 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 PHE A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 35 -164.68 -164.72 REMARK 500 1 PRO A 42 36.78 -83.23 REMARK 500 1 GLU A 43 11.76 47.73 REMARK 500 1 HIS A 86 -161.51 -118.36 REMARK 500 1 GLN A 98 -53.41 63.92 REMARK 500 2 PRO A 42 43.33 -81.02 REMARK 500 2 GLU A 43 16.44 50.92 REMARK 500 2 ASN A 99 -41.11 -164.59 REMARK 500 3 PRO A 42 47.98 -81.03 REMARK 500 3 GLU A 43 26.13 42.63 REMARK 500 3 LYS A 96 79.75 -111.53 REMARK 500 3 ASN A 99 83.49 64.31 REMARK 500 4 GLU A 35 -167.02 -162.55 REMARK 500 4 PRO A 42 33.80 -81.83 REMARK 500 4 GLU A 43 6.50 59.60 REMARK 500 4 THR A 97 -88.84 -90.95 REMARK 500 4 GLN A 98 -174.20 178.08 REMARK 500 5 GLU A 35 -177.46 -173.53 REMARK 500 5 GLU A 43 15.84 47.99 REMARK 500 5 ASN A 44 -21.48 -141.86 REMARK 500 5 GLN A 98 -20.44 -148.59 REMARK 500 6 PRO A 33 38.44 -71.95 REMARK 500 6 LYS A 34 -61.56 -151.83 REMARK 500 6 GLU A 35 -167.56 -164.25 REMARK 500 6 PRO A 42 42.08 -84.16 REMARK 500 6 GLU A 43 7.32 52.95 REMARK 500 7 GLU A 43 12.31 50.93 REMARK 500 7 LYS A 59 79.52 -41.98 REMARK 500 8 PRO A 42 43.84 -80.48 REMARK 500 8 GLU A 43 3.69 54.16 REMARK 500 8 SER A 45 96.84 -60.03 REMARK 500 9 GLU A 35 -173.99 -170.48 REMARK 500 9 PRO A 42 44.14 -81.24 REMARK 500 9 GLU A 43 22.14 41.02 REMARK 500 9 ASN A 99 77.14 56.61 REMARK 500 10 HIS A 86 -150.13 -147.70 REMARK 500 10 ASP A 87 108.53 -44.39 REMARK 500 11 GLU A 35 -166.36 -161.62 REMARK 500 11 PRO A 42 34.87 -80.01 REMARK 500 11 GLU A 43 13.46 49.58 REMARK 500 12 PRO A 33 3.30 -67.75 REMARK 500 12 GLU A 43 -1.09 53.16 REMARK 500 12 SER A 45 106.19 -53.90 REMARK 500 13 LYS A 34 -32.59 -133.42 REMARK 500 13 GLU A 35 -161.31 -168.73 REMARK 500 13 GLU A 43 12.53 50.47 REMARK 500 13 HIS A 86 -156.06 -158.16 REMARK 500 14 PRO A 42 33.11 -81.56 REMARK 500 14 ASP A 87 98.93 44.60 REMARK 500 15 GLU A 35 -169.15 -170.06 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HT5A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16390 RELATED DB: BMRB DBREF 2KLC A 23 101 UNP Q9UMX0 UBQL1_HUMAN 34 112 SEQADV 2KLC MET A 1 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC GLY A 2 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC SER A 3 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC SER A 4 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 5 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 6 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 7 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 8 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 9 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 10 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC SER A 11 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC SER A 12 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC GLY A 13 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC ARG A 14 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC GLU A 15 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC ASN A 16 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC LEU A 17 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC TYR A 18 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC PHE A 19 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC GLN A 20 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC GLY A 21 UNP Q9UMX0 EXPRESSION TAG SEQADV 2KLC HIS A 22 UNP Q9UMX0 EXPRESSION TAG SEQRES 1 A 101 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 101 ARG GLU ASN LEU TYR PHE GLN GLY HIS PRO LYS ILE MET SEQRES 3 A 101 LYS VAL THR VAL LYS THR PRO LYS GLU LYS GLU GLU PHE SEQRES 4 A 101 ALA VAL PRO GLU ASN SER SER VAL GLN GLN PHE LYS GLU SEQRES 5 A 101 GLU ILE SER LYS ARG PHE LYS SER HIS THR ASP GLN LEU SEQRES 6 A 101 VAL LEU ILE PHE ALA GLY LYS ILE LEU LYS ASP GLN ASP SEQRES 7 A 101 THR LEU SER GLN HIS GLY ILE HIS ASP GLY LEU THR VAL SEQRES 8 A 101 HIS LEU VAL ILE LYS THR GLN ASN ARG PRO HELIX 1 1 SER A 46 LYS A 59 1 14 HELIX 2 2 HIS A 61 ASP A 63 5 3 HELIX 3 3 LEU A 80 GLY A 84 5 5 SHEET 1 A 5 LYS A 36 VAL A 41 0 SHEET 2 A 5 MET A 26 LYS A 31 -1 N VAL A 30 O GLU A 37 SHEET 3 A 5 THR A 90 ILE A 95 1 O VAL A 91 N LYS A 31 SHEET 4 A 5 LEU A 65 PHE A 69 -1 N ILE A 68 O HIS A 92 SHEET 5 A 5 LYS A 72 LEU A 74 -1 O LYS A 72 N PHE A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1