HEADER CELL CYCLE 06-JUL-09 2KLO TITLE STRUCTURE OF THE CDT1 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION FACTOR CDT1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 420-557; COMPND 5 SYNONYM: DOUBLE PARKED HOMOLOG, DUP, RETROVIRAL INSERTION SITE 2 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDT1, RIS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS MOUSE CDT1, REPLICATION LICENSING FACTOR, WINGED HELIX FOLD, MCM KEYWDS 2 BINDING, CELL CYCLE, DNA REPLICATION, DNA-BINDING, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, PROTO-ONCOGENE, UBL CONJUGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.I.KHAYRUTDINOV,W.J.BAE,Y.M.YUN,T.TSUYAMA,J.J.KIM,E.HWANG,K.-S.RYU, AUTHOR 2 H.-K.CHEONG,C.CHEONG,P.A.KARPLUS,P.GUNTERT,S.TADA,Y.H.JEON,Y.CHO REVDAT 3 16-MAR-22 2KLO 1 REMARK REVDAT 2 03-NOV-09 2KLO 1 JRNL REVDAT 1 13-OCT-09 2KLO 0 JRNL AUTH B.I.KHAYRUTDINOV,W.J.BAE,Y.M.YUN,J.H.LEE,T.TSUYAMA,J.J.KIM, JRNL AUTH 2 E.HWANG,K.-S.RYU,H.-K.CHEONG,C.CHEONG,J.-S.KO,T.ENOMOTO, JRNL AUTH 3 P.A.KARPLUS,P.GUNTERT,S.TADA,Y.H.JEON,Y.CHO JRNL TITL STRUCTURE OF THE CDT1 C-TERMINAL DOMAIN: CONSERVATION OF THE JRNL TITL 2 WINGED HELIX FOLD IN REPLICATION LICENSING FACTORS JRNL REF PROTEIN SCI. V. 18 2252 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19722278 JRNL DOI 10.1002/PRO.236 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101275. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 20MM MES-1, 80MM SODIUM CHLORIDE REMARK 210 -2, 10MM BETA-MERCAPTOETHANOL-3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D CBCA(CO)NH; REMARK 210 3D CACBNH; 3D HN(CA)CO; 3D HNCO; REMARK 210 3D HN(CO)CA; 3D HNCA; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D CCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OPAL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 9 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 12 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 13 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 16 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 45.63 -143.58 REMARK 500 1 SER A 12 10.64 -61.67 REMARK 500 1 CYS A 34 -68.38 -158.62 REMARK 500 1 THR A 81 -98.81 -132.65 REMARK 500 1 ALA A 82 41.97 -156.19 REMARK 500 1 LEU A 99 56.89 -119.21 REMARK 500 1 ASP A 111 174.95 175.53 REMARK 500 1 ASP A 121 98.32 -63.21 REMARK 500 1 HIS A 132 24.40 45.42 REMARK 500 1 GLU A 136 26.72 43.62 REMARK 500 2 SER A 12 4.58 51.87 REMARK 500 2 CYS A 34 -57.44 -179.67 REMARK 500 2 ARG A 62 7.78 59.74 REMARK 500 2 THR A 81 -101.45 -139.60 REMARK 500 2 ALA A 82 48.96 -163.25 REMARK 500 2 TRP A 102 -76.40 -87.69 REMARK 500 2 ARG A 109 -0.29 -57.68 REMARK 500 2 HIS A 132 13.98 47.54 REMARK 500 2 GLU A 136 -80.85 -125.24 REMARK 500 3 SER A 12 23.79 -62.95 REMARK 500 3 MET A 31 11.35 59.59 REMARK 500 3 CYS A 34 -59.55 -164.50 REMARK 500 3 ARG A 62 9.71 59.96 REMARK 500 3 GLN A 80 40.86 -65.49 REMARK 500 3 THR A 81 -94.94 -134.03 REMARK 500 3 ALA A 82 17.88 -151.12 REMARK 500 3 ARG A 109 -5.19 -56.39 REMARK 500 3 GLU A 136 -32.26 -140.94 REMARK 500 4 GLN A 13 -72.06 -91.83 REMARK 500 4 ARG A 30 44.25 -70.22 REMARK 500 4 THR A 32 53.85 -118.72 REMARK 500 4 CYS A 34 -60.44 -157.10 REMARK 500 4 GLN A 80 40.07 -65.00 REMARK 500 4 THR A 81 -87.13 -121.95 REMARK 500 4 ALA A 82 17.32 -156.71 REMARK 500 4 HIS A 132 19.72 49.61 REMARK 500 5 SER A 4 71.15 24.96 REMARK 500 5 SER A 12 29.27 -72.65 REMARK 500 5 GLU A 17 -9.75 -57.27 REMARK 500 5 CYS A 34 -63.63 -151.68 REMARK 500 5 GLN A 80 61.49 -65.67 REMARK 500 5 THR A 81 -102.81 -149.02 REMARK 500 5 ALA A 82 20.99 -149.22 REMARK 500 5 HIS A 132 22.84 47.22 REMARK 500 5 GLU A 136 -35.13 -133.70 REMARK 500 6 CYS A 34 -65.54 -150.57 REMARK 500 6 GLN A 80 55.52 -63.67 REMARK 500 6 THR A 81 -80.54 -143.92 REMARK 500 6 ALA A 82 34.90 -171.46 REMARK 500 6 ARG A 109 -0.87 -57.40 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 40 0.09 SIDE CHAIN REMARK 500 4 ARG A 109 0.08 SIDE CHAIN REMARK 500 5 ARG A 18 0.08 SIDE CHAIN REMARK 500 5 ARG A 33 0.10 SIDE CHAIN REMARK 500 5 ARG A 46 0.09 SIDE CHAIN REMARK 500 8 ARG A 40 0.08 SIDE CHAIN REMARK 500 8 ARG A 43 0.08 SIDE CHAIN REMARK 500 9 ARG A 30 0.09 SIDE CHAIN REMARK 500 9 ARG A 33 0.11 SIDE CHAIN REMARK 500 11 ARG A 40 0.08 SIDE CHAIN REMARK 500 11 ARG A 109 0.09 SIDE CHAIN REMARK 500 12 ARG A 128 0.08 SIDE CHAIN REMARK 500 14 ARG A 40 0.12 SIDE CHAIN REMARK 500 14 ARG A 74 0.12 SIDE CHAIN REMARK 500 14 ARG A 109 0.09 SIDE CHAIN REMARK 500 16 ARG A 20 0.09 SIDE CHAIN REMARK 500 16 TYR A 113 0.08 SIDE CHAIN REMARK 500 16 ARG A 128 0.09 SIDE CHAIN REMARK 500 18 ARG A 43 0.14 SIDE CHAIN REMARK 500 19 ARG A 55 0.12 SIDE CHAIN REMARK 500 19 ARG A 74 0.08 SIDE CHAIN REMARK 500 20 ARG A 107 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A4C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDT1 C-TERMINAL DOMAIN DBREF 2KLO A 1 138 UNP Q8R4E9 CDT1_MOUSE 420 557 SEQRES 1 A 138 PRO ALA ALA SER PRO SER ALA LEU LYS GLY VAL SER GLN SEQRES 2 A 138 ALA LEU LEU GLU ARG ILE ARG ALA LYS GLU VAL GLN LYS SEQRES 3 A 138 GLN LEU ALA ARG MET THR ARG CYS PRO GLU GLN GLU LEU SEQRES 4 A 138 ARG LEU GLN ARG LEU GLU ARG LEU PRO GLU LEU ALA ARG SEQRES 5 A 138 VAL LEU ARG ASN VAL PHE VAL SER GLU ARG LYS PRO ALA SEQRES 6 A 138 LEU THR MET GLU VAL VAL CYS ALA ARG MET VAL ASP SER SEQRES 7 A 138 CYS GLN THR ALA LEU SER PRO GLY GLU MET GLU LYS HIS SEQRES 8 A 138 LEU VAL LEU LEU ALA GLU LEU LEU PRO ASP TRP LEU SER SEQRES 9 A 138 LEU HIS ARG ILE ARG THR ASP THR TYR VAL LYS LEU ASP SEQRES 10 A 138 LYS ALA VAL ASP LEU ALA GLY LEU THR ALA ARG LEU ALA SEQRES 11 A 138 HIS HIS VAL HIS ALA GLU GLY LEU HELIX 1 1 SER A 12 LEU A 28 1 17 HELIX 2 2 GLU A 36 GLU A 45 1 10 HELIX 3 3 ARG A 46 GLU A 61 1 16 HELIX 4 4 MET A 68 ASP A 77 1 10 HELIX 5 5 SER A 78 GLN A 80 5 3 HELIX 6 6 SER A 84 LEU A 99 1 16 HELIX 7 7 ASP A 121 HIS A 131 1 11 SHEET 1 A 3 ALA A 65 THR A 67 0 SHEET 2 A 3 ASP A 111 LEU A 116 -1 O VAL A 114 N LEU A 66 SHEET 3 A 3 LEU A 103 ILE A 108 -1 N HIS A 106 O TYR A 113 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1