HEADER MEMBRANE PROTEIN 08-JUL-09 2KLV TITLE MEMBRANE-BOUND STRUCTURE OF THE PF1 MAJOR COAT PROTEIN IN DHPC MICELLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN G8P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GENE 8 PROTEIN, G8P, COAT PROTEIN B, MAJOR COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PF1; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE PF1; SOURCE 4 ORGANISM_TAXID: 10871; SOURCE 5 GENE: VIII; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS AERUGINOSA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 287; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PF1 PHAGE KEYWDS MEMBRANE PROTEIN, ALIGNMENT, ALPHA HELIX, CAPSID PROTEIN, MEMBRANE, KEYWDS 2 TRANSMEMBRANE, VIRION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.PARK,W.SON,R.MUKHOPADHYAY,H.VALAFAR,S.J.OPELLA REVDAT 4 22-MAY-24 2KLV 1 REMARK REVDAT 3 16-MAR-22 2KLV 1 REMARK REVDAT 2 20-OCT-09 2KLV 1 JRNL REVDAT 1 06-OCT-09 2KLV 0 JRNL AUTH S.H.PARK,W.S.SON,R.MUKHOPADHYAY,H.VALAFAR,S.J.OPELLA JRNL TITL PHAGE-INDUCED ALIGNMENT OF MEMBRANE PROTEINS ENABLES THE JRNL TITL 2 MEASUREMENT AND STRUCTURAL ANALYSIS OF RESIDUAL DIPOLAR JRNL TITL 3 COUPLINGS WITH DIPOLAR WAVES AND LAMBDA-MAPS. JRNL REF J.AM.CHEM.SOC. V. 131 14140 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19761238 JRNL DOI 10.1021/JA905640D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, C.D. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101282. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] PF1 REMARK 210 MAJOR COAT PROTEIN-1, 100 MM REMARK 210 DHPC MICELLE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D 1H REMARK 210 -15N NOESY; 1H-15N IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 VAL A 2 CB CG1 CG2 REMARK 470 ILE A 3 CB CG1 CG2 CD1 REMARK 470 ASP A 4 CB CG OD1 OD2 REMARK 470 THR A 5 CB OG1 CG2 REMARK 470 SER A 6 CB OG REMARK 470 ALA A 7 CB REMARK 470 VAL A 8 CB CG1 CG2 REMARK 470 GLU A 9 CB CG CD OE1 OE2 REMARK 470 SER A 10 CB OG REMARK 470 ALA A 11 CB REMARK 470 ILE A 12 CB CG1 CG2 CD1 REMARK 470 THR A 13 CB OG1 CG2 REMARK 470 ASP A 14 CB CG OD1 OD2 REMARK 470 GLN A 16 CB CG CD OE1 NE2 REMARK 470 ASP A 18 CB CG OD1 OD2 REMARK 470 MET A 19 CB CG SD CE REMARK 470 LYS A 20 CB CG CD CE NZ REMARK 470 ALA A 21 CB REMARK 470 ILE A 22 CB CG1 CG2 CD1 REMARK 470 TYR A 25 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 25 OH REMARK 470 ILE A 26 CB CG1 CG2 CD1 REMARK 470 VAL A 27 CB CG1 CG2 REMARK 470 ALA A 29 CB REMARK 470 LEU A 30 CB CG CD1 CD2 REMARK 470 VAL A 31 CB CG1 CG2 REMARK 470 ILE A 32 CB CG1 CG2 CD1 REMARK 470 LEU A 33 CB CG CD1 CD2 REMARK 470 ALA A 34 CB REMARK 470 VAL A 35 CB CG1 CG2 REMARK 470 ALA A 36 CB REMARK 470 LEU A 38 CB CG CD1 CD2 REMARK 470 ILE A 39 CB CG1 CG2 CD1 REMARK 470 TYR A 40 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 40 OH REMARK 470 SER A 41 CB OG REMARK 470 MET A 42 CB CG SD CE REMARK 470 LEU A 43 CB CG CD1 CD2 REMARK 470 ARG A 44 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CB CG CD CE NZ REMARK 470 ALA A 46 O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 -45.18 -165.88 REMARK 500 1 ASP A 14 46.88 -107.79 REMARK 500 1 GLN A 16 81.03 154.60 REMARK 500 1 ASP A 18 85.75 -178.03 REMARK 500 1 MET A 19 -1.52 58.22 REMARK 500 2 ASP A 4 -42.72 -166.41 REMARK 500 2 GLN A 16 78.42 158.04 REMARK 500 2 ASP A 18 84.67 -178.97 REMARK 500 2 MET A 19 -3.30 54.92 REMARK 500 3 ASP A 4 -23.16 177.61 REMARK 500 3 ASP A 14 53.04 -110.07 REMARK 500 3 GLN A 16 -133.69 -136.20 REMARK 500 3 ASP A 18 -157.53 109.06 REMARK 500 3 MET A 19 -98.58 42.46 REMARK 500 4 ASP A 4 -47.42 178.21 REMARK 500 4 ASP A 14 47.10 -107.83 REMARK 500 4 GLN A 16 -46.11 179.64 REMARK 500 4 ASP A 18 -153.41 102.53 REMARK 500 4 MET A 19 -92.87 43.08 REMARK 500 4 LYS A 45 -78.06 59.18 REMARK 500 5 VAL A 2 41.44 -105.38 REMARK 500 5 ASP A 4 -25.92 -178.94 REMARK 500 5 ASP A 14 54.33 -117.69 REMARK 500 5 GLN A 16 -139.78 -132.99 REMARK 500 5 ASP A 18 -150.67 111.29 REMARK 500 5 MET A 19 -103.65 39.00 REMARK 500 5 LYS A 45 -82.46 56.66 REMARK 500 6 ASP A 4 -24.59 -179.48 REMARK 500 6 ASP A 14 45.93 -109.47 REMARK 500 6 GLN A 16 81.39 153.80 REMARK 500 6 ASP A 18 85.07 -177.48 REMARK 500 6 MET A 19 0.28 57.85 REMARK 500 7 ASP A 4 -34.28 -172.22 REMARK 500 7 MET A 19 -5.36 57.74 REMARK 500 7 LYS A 45 -84.95 54.16 REMARK 500 8 ASP A 4 -51.82 -176.55 REMARK 500 8 ASP A 14 58.55 -118.48 REMARK 500 8 GLN A 16 -46.89 179.75 REMARK 500 8 ASP A 18 -147.54 103.81 REMARK 500 8 MET A 19 -95.09 42.61 REMARK 500 9 ASP A 4 -44.71 175.92 REMARK 500 9 ASP A 14 48.10 -107.22 REMARK 500 9 GLN A 16 -36.90 170.53 REMARK 500 9 ASP A 18 -154.87 106.89 REMARK 500 9 MET A 19 -87.67 43.74 REMARK 500 10 VAL A 2 -40.60 -177.83 REMARK 500 10 ASP A 4 -73.27 -74.32 REMARK 500 10 GLN A 16 -22.01 -177.50 REMARK 500 10 ASP A 18 -24.69 94.36 REMARK 500 10 LYS A 45 -83.12 55.69 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJF RELATED DB: PDB REMARK 900 SOLID STATE NMR STRUCTURE OF THE PF1 MAJOR COAT PROTEIN IN REMARK 900 MAGNETICALLY ALIGNED BACTERIOPHAGE DBREF 2KLV A 1 46 UNP P03621 CAPSD_BPPF1 37 82 SEQRES 1 A 46 GLY VAL ILE ASP THR SER ALA VAL GLU SER ALA ILE THR SEQRES 2 A 46 ASP GLY GLN GLY ASP MET LYS ALA ILE GLY GLY TYR ILE SEQRES 3 A 46 VAL GLY ALA LEU VAL ILE LEU ALA VAL ALA GLY LEU ILE SEQRES 4 A 46 TYR SER MET LEU ARG LYS ALA HELIX 1 1 ASP A 4 ASP A 14 1 11 HELIX 2 2 MET A 19 MET A 42 1 24 HELIX 3 3 LEU A 43 LYS A 45 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1