HEADER CELL ADHESION 27-JUL-09 2KMC TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF KINDLIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERMITIN FAMILY HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-96; COMPND 5 SYNONYM: KINDLIN-1, UNC-112-RELATED PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FERMT1, KIND1, URP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET151-TOPO KEYWDS KINDLIN, CYTOSKELETON, INTEGRIN, N-TERMINAL, TALIN, CELL ADHESION, KEYWDS 2 CELL JUNCTION, CELL MEMBRANE, CELL PROJECTION, CYTOPLASM, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.T.GOULT,N.BATE,G.C.ROBERTS,I.L.BARSUKOV,D.R.CRITCHLEY REVDAT 3 16-MAR-22 2KMC 1 REMARK SEQADV REVDAT 2 01-DEC-09 2KMC 1 JRNL REVDAT 1 06-OCT-09 2KMC 0 JRNL AUTH B.T.GOULT,M.BOUAOUINA,D.S.HARBURGER,N.BATE,B.PATEL, JRNL AUTH 2 N.J.ANTHIS,I.D.CAMPBELL,D.A.CALDERWOOD,I.L.BARSUKOV, JRNL AUTH 3 G.C.ROBERTS,D.R.CRITCHLEY JRNL TITL THE STRUCTURE OF THE N-TERMINUS OF KINDLIN-1: A DOMAIN JRNL TITL 2 IMPORTANT FOR ALPHAIIBBETA3 INTEGRIN ACTIVATION JRNL REF J.MOL.BIOL. V. 394 944 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19804783 JRNL DOI 10.1016/J.JMB.2009.09.061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.0, CNS 1.1, ARIA 1.2, CYANA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES REFINED IN EXPLICIT REMARK 3 WATER BATH AS IMPLEMENTED IN ARIA 1.2/CNS 1.1. 20 LOWEST ENERGY REMARK 3 STRUCTURES SELECTED FROM WATER REFINEMENT USING CNS. INITIAL REMARK 3 STRUCTURES GENERATED WITH CYANA REMARK 4 REMARK 4 2KMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101298. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM F0-1, 10% [U-100% 2H] D2O REMARK 210 -2, 2MM DTT-3, 50MM SODIUM REMARK 210 CHLORIDE-4, 20MM SODIUM REMARK 210 PHOSPHATE-5, 90% H2O/10% D2O; REMARK 210 0.4MM [U-100% 13C; U-100% 15N] REMARK 210 F0-6, 10% [U-100% 2H] D2O-7, 2MM REMARK 210 DTT-8, 50 MM SODIUM CHLORIDE-9, REMARK 210 20MM SODIUM PHOSPHATE-10, 90% REMARK 210 H2O/10% D2O; 0.4MM F0-11, 100% REMARK 210 [U-100% 2H] D2O-12, 2MM DTT-13, REMARK 210 50MM SODIUM CHLORIDE-14, 20MM REMARK 210 SODIUM PHOSPHATE-15, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.0, CYANA 2.1, ANALYSIS REMARK 210 1.0.15 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 18 O THR A 27 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A -4 101.06 63.91 REMARK 500 1 LEU A 2 -156.02 59.61 REMARK 500 1 SER A 3 -43.01 73.63 REMARK 500 1 LEU A 7 -74.62 -103.16 REMARK 500 1 THR A 8 14.79 175.98 REMARK 500 1 GLN A 25 151.52 178.75 REMARK 500 1 ASN A 51 74.61 54.74 REMARK 500 1 ARG A 67 74.16 51.71 REMARK 500 1 LYS A 95 -170.21 51.78 REMARK 500 2 PRO A -2 7.15 -66.22 REMARK 500 2 PHE A -1 171.10 70.44 REMARK 500 2 LEU A 2 -43.28 -161.53 REMARK 500 2 SER A 4 34.97 -150.12 REMARK 500 2 ALA A 10 121.56 67.42 REMARK 500 2 GLU A 24 174.41 61.75 REMARK 500 2 ASN A 51 71.67 55.31 REMARK 500 2 ALA A 53 92.93 -66.02 REMARK 500 3 ASP A -3 -59.14 -142.40 REMARK 500 3 SER A 9 -65.91 -174.86 REMARK 500 3 ALA A 10 33.39 -162.26 REMARK 500 3 GLN A 25 117.35 -173.53 REMARK 500 3 ASN A 51 75.22 60.40 REMARK 500 3 ARG A 67 82.87 57.89 REMARK 500 3 GLN A 83 -164.65 -121.07 REMARK 500 3 LYS A 95 139.83 71.19 REMARK 500 4 THR A 0 -161.34 53.99 REMARK 500 4 SER A 9 40.31 -104.59 REMARK 500 4 ALA A 10 42.19 -79.44 REMARK 500 4 ASP A 55 36.33 -148.30 REMARK 500 4 ARG A 67 76.78 53.30 REMARK 500 4 HIS A 94 78.48 49.04 REMARK 500 5 PRO A -2 33.13 -86.85 REMARK 500 5 THR A 0 -84.00 -74.85 REMARK 500 5 SER A 3 105.95 68.95 REMARK 500 5 LEU A 7 48.74 -82.73 REMARK 500 5 ALA A 21 105.08 -49.98 REMARK 500 5 ASN A 51 81.06 53.45 REMARK 500 5 ASP A 58 81.85 60.41 REMARK 500 5 ARG A 67 72.72 59.37 REMARK 500 5 GLN A 83 -169.36 -112.22 REMARK 500 5 LYS A 95 142.50 69.22 REMARK 500 6 ILE A -4 90.55 65.74 REMARK 500 6 MET A 1 88.08 65.66 REMARK 500 6 LEU A 7 -61.85 72.11 REMARK 500 6 THR A 8 32.32 -80.52 REMARK 500 6 ASN A 22 -37.14 -179.92 REMARK 500 6 TRP A 56 35.43 -96.68 REMARK 500 6 LYS A 95 77.74 59.65 REMARK 500 7 SER A 3 76.28 -163.24 REMARK 500 7 SER A 4 53.35 -152.13 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16163 RELATED DB: BMRB DBREF 2KMC A 1 96 UNP P59113 FERM1_MOUSE 1 96 SEQADV 2KMC GLY A -5 UNP P59113 EXPRESSION TAG SEQADV 2KMC ILE A -4 UNP P59113 EXPRESSION TAG SEQADV 2KMC ASP A -3 UNP P59113 EXPRESSION TAG SEQADV 2KMC PRO A -2 UNP P59113 EXPRESSION TAG SEQADV 2KMC PHE A -1 UNP P59113 EXPRESSION TAG SEQADV 2KMC THR A 0 UNP P59113 EXPRESSION TAG SEQRES 1 A 102 GLY ILE ASP PRO PHE THR MET LEU SER SER GLY ASP LEU SEQRES 2 A 102 THR SER ALA SER TRP GLU LEU VAL VAL ARG VAL ASP HIS SEQRES 3 A 102 ALA ASN GLY GLU GLN GLN THR GLU ILE THR LEU ARG VAL SEQRES 4 A 102 SER GLY ASP LEU HIS ILE GLY GLY VAL MET LEU LYS LEU SEQRES 5 A 102 VAL GLU GLN MET ASN ILE ALA GLN ASP TRP SER ASP TYR SEQRES 6 A 102 ALA LEU TRP TRP GLU GLN LYS ARG CYS TRP LEU LEU LYS SEQRES 7 A 102 THR HIS TRP THR LEU ASP LYS CYS GLY VAL GLN ALA ASP SEQRES 8 A 102 ALA ASN LEU LEU PHE THR PRO GLN HIS LYS MET HELIX 1 1 HIS A 38 ASN A 51 1 14 HELIX 2 2 THR A 76 GLY A 81 1 6 SHEET 1 A 5 GLN A 26 VAL A 33 0 SHEET 2 A 5 TRP A 12 ASP A 19 -1 N VAL A 18 O THR A 27 SHEET 3 A 5 LEU A 88 PRO A 92 1 O PHE A 90 N ARG A 17 SHEET 4 A 5 TYR A 59 TRP A 63 -1 N TRP A 62 O LEU A 89 SHEET 5 A 5 CYS A 68 LEU A 70 -1 O LEU A 70 N LEU A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1