HEADER GENE REGULATION 28-JUL-09 2KMG TITLE THE STRUCTURE OF THE KLCA AND ARDB PROTEINS SHOW A NOVEL FOLD AND TITLE 2 ANTIRESTRICTION ACTIVITY AGAINST TYPE I DNA RESTRICTION SYSTEMS IN TITLE 3 VIVO BUT NOT IN VITRO COMPND MOL_ID: 1; COMPND 2 MOLECULE: KLCA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: KLCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-24A KEYWDS KLCA, ARDB, NMR SPECTROSCOPY, ANTI-RESTRICTION, PLASMID, GENE KEYWDS 2 REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.SERFIOTIS-MITSA,A.P.HERBERT,G.A.ROBERTS,D.C.SOARES,J.H.WHITE, AUTHOR 2 G.W.BLAKELY,D.UHRIN,D.T.F.DRYDEN REVDAT 5 15-MAY-24 2KMG 1 REMARK REVDAT 4 14-JUN-23 2KMG 1 REMARK REVDAT 3 26-FEB-20 2KMG 1 REMARK REVDAT 2 23-MAR-10 2KMG 1 JRNL REVDAT 1 29-DEC-09 2KMG 0 JRNL AUTH D.SERFIOTIS-MITSA,A.P.HERBERT,G.A.ROBERTS,D.C.SOARES, JRNL AUTH 2 J.H.WHITE,G.W.BLAKELY,D.UHRIN,D.T.F.DRYDEN JRNL TITL THE STRUCTURE OF THE KLCA AND ARDB PROTEINS REVEALS A NOVEL JRNL TITL 2 FOLD AND ANTIRESTRICTION ACTIVITY AGAINST TYPE I DNA JRNL TITL 3 RESTRICTION SYSTEMS IN VIVO BUT NOT IN VITRO JRNL REF NUCLEIC ACIDS RES. V. 38 1723 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20007596 JRNL DOI 10.1093/NAR/GKP1144 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101302. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM [U-98% 13C; U-98% 15N] REMARK 210 KLCA-1, 20MM [U-100% 2H] SODIUM REMARK 210 ACETATE-2, 0.05% SODIUM AZIDE-3, REMARK 210 90% H2O/10% D2O; 0.7MM [U-98% REMARK 210 15N] KLCA-4, 20MM [U-100% 2H] REMARK 210 SODIUM ACETATE-5, 0.05% SODIUM REMARK 210 AZIDE-6, 6.25MG/ML PF1 PHAGE-7, REMARK 210 90% H2O/10% D2O; 0.7MM [U-98% REMARK 210 15N] KLCA-8, 20MM [U-100% 2H] REMARK 210 SODIUM ACETATE-9, 0.05% SODIUM REMARK 210 AZIDE-10, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HNCO; 3D HNCACO; REMARK 210 3D HBHANH; 3D HBHA(CO)NH; 2D 1H- REMARK 210 13C HSQC (AROMATIC SELECTIVE); REMARK 210 3D H(CCO)NH; 3D C(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; T1; T2; REMARK 210 HETERONUCLEAR NOE; IPAP FOR RDC REMARK 210 MEASUREMENT REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, CCPNMR ANALYSIS REMARK 210 1.0.15, AZARA 2.7, PROCHECKNMR REMARK 210 3.5, WHAT IF, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 -93.36 -124.08 REMARK 500 1 PRO A 7 6.28 -69.14 REMARK 500 1 ALA A 14 152.39 -49.69 REMARK 500 1 MET A 31 -36.37 -34.28 REMARK 500 1 GLU A 75 88.71 -65.66 REMARK 500 1 ASN A 81 12.40 -140.76 REMARK 500 1 ALA A 109 -173.06 60.25 REMARK 500 2 THR A 3 -28.45 -142.61 REMARK 500 2 TYR A 25 -71.27 -122.46 REMARK 500 2 MET A 31 -34.66 -32.66 REMARK 500 2 ARG A 48 47.24 -108.12 REMARK 500 2 PHE A 64 124.42 65.34 REMARK 500 2 ASN A 81 13.61 -141.08 REMARK 500 3 THR A 3 12.46 -140.66 REMARK 500 3 MET A 31 -37.58 -30.61 REMARK 500 3 TYR A 49 90.82 -69.44 REMARK 500 3 PHE A 64 118.26 62.49 REMARK 500 3 ASN A 81 11.75 -155.69 REMARK 500 3 SER A 88 -170.73 -63.28 REMARK 500 3 ALA A 109 -166.07 57.51 REMARK 500 3 ASP A 110 -175.13 60.50 REMARK 500 4 MET A 31 -38.14 -31.67 REMARK 500 4 ARG A 48 54.46 -117.93 REMARK 500 4 PHE A 64 143.66 -34.88 REMARK 500 4 ARG A 73 94.84 -61.20 REMARK 500 4 GLU A 75 90.75 -65.38 REMARK 500 4 ASN A 81 14.79 -143.43 REMARK 500 4 ASP A 112 -61.14 -106.86 REMARK 500 5 GLU A 4 -74.12 -60.67 REMARK 500 5 GLU A 5 139.40 66.07 REMARK 500 5 TYR A 49 85.35 -66.10 REMARK 500 5 PHE A 64 123.83 64.38 REMARK 500 5 ASN A 81 11.83 -151.85 REMARK 500 6 ASN A 2 18.10 -149.17 REMARK 500 6 GLU A 5 98.85 59.74 REMARK 500 6 PRO A 7 5.34 -68.67 REMARK 500 6 ARG A 48 46.88 -107.28 REMARK 500 6 ALA A 52 -179.69 -178.01 REMARK 500 6 PHE A 64 144.62 -37.22 REMARK 500 7 PRO A 7 -143.02 -59.10 REMARK 500 7 VAL A 8 134.23 -24.68 REMARK 500 7 MET A 31 -35.56 -34.01 REMARK 500 7 ARG A 48 54.83 -115.77 REMARK 500 7 ALA A 52 -177.10 -179.76 REMARK 500 7 PHE A 64 148.69 -179.58 REMARK 500 7 ASN A 79 23.47 -78.30 REMARK 500 7 ALA A 109 -83.59 -44.26 REMARK 500 8 ASN A 2 -2.27 -159.41 REMARK 500 8 ARG A 48 48.80 -109.16 REMARK 500 8 PHE A 64 121.02 63.21 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16428 RELATED DB: BMRB DBREF 2KMG A 1 142 UNP Q08L07 Q08L07_BORPE 1 142 SEQRES 1 A 142 MET ASN THR GLU GLU GLN PRO VAL THR ALA SER LEU VAL SEQRES 2 A 142 ALA GLU ALA GLN ARG LEU ASP PHE LEU PRO THR TYR PHE SEQRES 3 A 142 GLY PRO ARG LEU MET MET ARG GLY GLU ALA LEU VAL TYR SEQRES 4 A 142 ALA TRP MET ARG ARG LEU CYS GLU ARG TYR ASN GLY ALA SEQRES 5 A 142 TYR TRP HIS TYR TYR ALA LEU SER ASP GLY GLY PHE TYR SEQRES 6 A 142 MET ALA PRO ASP LEU ALA GLY ARG LEU GLU ILE GLU VAL SEQRES 7 A 142 ASN GLY ASN GLY PHE ARG GLY GLU LEU SER ALA ASP ALA SEQRES 8 A 142 ALA GLY ILE VAL ALA THR LEU PHE ALA LEU GLY GLN LEU SEQRES 9 A 142 ALA ALA GLU ILE ALA ASP THR ASP ALA ALA ASP ALA LEU SEQRES 10 A 142 ILE ASP ARG TYR HIS PHE LEU ARG GLY PHE ALA ALA GLY SEQRES 11 A 142 HIS PRO GLU ALA ALA ALA ILE TYR ARG ALA ILE ASP HELIX 1 1 GLN A 17 PHE A 26 1 10 HELIX 2 2 ARG A 29 CYS A 46 1 18 HELIX 3 3 SER A 88 ILE A 108 1 21 HELIX 4 4 LEU A 117 ALA A 128 1 12 HELIX 5 5 ALA A 129 HIS A 131 5 3 HELIX 6 6 GLU A 133 ASP A 142 1 10 SHEET 1 A 3 ALA A 10 LEU A 12 0 SHEET 2 A 3 HIS A 55 LEU A 59 -1 O ALA A 58 N SER A 11 SHEET 3 A 3 PHE A 64 ALA A 67 -1 O TYR A 65 N TYR A 57 SHEET 1 B 2 LEU A 74 VAL A 78 0 SHEET 2 B 2 PHE A 83 LEU A 87 -1 O LEU A 87 N LEU A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1