HEADER METAL BINDING PROTEIN 12-AUG-09 2KN2 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF SOYBEAN CALMODULIN TITLE 2 ISOFORM 4 FUSED WITH THE CALMODULIN-BINDING DOMAIN OF NTMKP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 79-150; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEANS; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: SCAM-4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30B; SOURCE 10 OTHER_DETAILS: SUMO FUSION KEYWDS CALMODULIN, CALMODULIN-TARGET COMPLEX, SOYBEAN CALMODULIN, SCAM4, KEYWDS 2 MAPK PHOSPHATASE 1, NTMKP1, TOBACCO MKP1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.ISHIDA,M.RAINALDI,H.J.VOGEL REVDAT 4 22-MAY-24 2KN2 1 REMARK REVDAT 3 16-MAR-22 2KN2 1 REMARK SEQADV LINK REVDAT 2 18-AUG-10 2KN2 1 JRNL REVDAT 1 25-AUG-09 2KN2 0 JRNL AUTH H.ISHIDA,M.RAINALDI,H.J.VOGEL JRNL TITL STRUCTURAL STUDIES OF SOYBEAN CALMODULIN ISOFORM 4 BOUND TO JRNL TITL 2 THE CALMODULIN-BINDING DOMAIN OF TOBACCO MITOGEN-ACTIVATED JRNL TITL 3 PROTEIN KINASE PHOSPHATASE-1 PROVIDE INSIGHTS INTO A JRNL TITL 4 SEQUENTIAL TARGET BINDING MODE. JRNL REF J.BIOL.CHEM. V. 284 28292 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19667066 JRNL DOI 10.1074/JBC.M109.025080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, X-PLOR NIH 2.19 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000101324. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 100; 300 REMARK 210 PRESSURE : AMBIENT; NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 SCAM4-1, 100 MM POTASSIUM REMARK 210 CHLORIDE-2, 5 MM CALCIUM REMARK 210 CHLORIDE-3, 20 MM BIS-TRIS-4, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-99% 13C; REMARK 210 U-99% 15N] SCAM4-5, 100 MM REMARK 210 POTASSIUM CHLORIDE-6, 5 MM REMARK 210 CALCIUM CHLORIDE-7, 20 MM BIS- REMARK 210 TRIS-8, 99.9% D2O; 0.5 MM [U-99% REMARK 210 15N] SCAM4-9, 300 MM POTASSIUM REMARK 210 CHLORIDE-10, 5 MM CALCIUM REMARK 210 CHLORIDE-11, 20 MM BIS-TRIS-12, REMARK 210 16 MG/ML PF1 PHAGE-13, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HBHA(CO)NH; 3D 1H-13C NOESY; 3D REMARK 210 1H-15N NOESY; 2D IPAP-1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 51 H ASP A 55 1.53 REMARK 500 OD1 ASN A 63 H GLU A 66 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 25.59 40.38 REMARK 500 1 ASP A 4 -145.35 65.51 REMARK 500 1 THR A 5 -29.14 77.90 REMARK 500 1 ASP A 6 -17.78 -46.22 REMARK 500 1 PHE A 90 -96.49 -80.77 REMARK 500 1 SER A 91 -73.51 -73.14 REMARK 500 2 ASP A 4 -127.64 -163.81 REMARK 500 2 THR A 5 86.63 -62.04 REMARK 500 2 PHE A 90 42.98 -99.22 REMARK 500 3 GLN A 22 32.67 77.00 REMARK 500 3 PHE A 90 45.81 -94.36 REMARK 500 3 SER A 91 139.03 61.63 REMARK 500 4 ASP A 4 -89.79 -50.15 REMARK 500 4 SER A 27 -166.05 -111.97 REMARK 500 4 ARG A 75 -19.05 -46.93 REMARK 500 5 SER A 27 -169.18 -110.57 REMARK 500 5 VAL A 68 -70.04 -60.72 REMARK 500 5 SER A 91 -77.59 -15.55 REMARK 500 6 HIS A 2 77.94 52.85 REMARK 500 6 PHE A 90 -82.70 -84.79 REMARK 500 7 MET A 3 -84.96 -46.76 REMARK 500 7 ASP A 4 76.33 -176.89 REMARK 500 7 SER A 27 -163.38 -125.48 REMARK 500 7 PHE A 90 41.57 -95.71 REMARK 500 8 ALA A 28 -39.16 -39.75 REMARK 500 8 PHE A 90 -78.81 -72.04 REMARK 500 8 SER A 91 -124.94 49.03 REMARK 500 9 MET A 3 73.25 45.55 REMARK 500 9 THR A 5 92.13 -56.22 REMARK 500 9 SER A 27 -162.87 -110.64 REMARK 500 9 PHE A 90 -69.40 -161.09 REMARK 500 10 LEU A 42 -167.21 -109.34 REMARK 500 10 ARG A 87 -61.75 -92.73 REMARK 500 10 PHE A 90 51.11 -101.74 REMARK 500 11 ASP A 4 -83.57 -172.00 REMARK 500 11 SER A 91 -103.99 -176.36 REMARK 500 12 HIS A 2 31.03 -97.46 REMARK 500 12 ASP A 4 -90.26 -19.23 REMARK 500 12 SER A 27 -167.76 -124.13 REMARK 500 12 LYS A 89 -95.73 -57.99 REMARK 500 12 PHE A 90 -106.70 10.60 REMARK 500 13 MET A 3 -158.48 -82.75 REMARK 500 13 THR A 5 91.54 -41.21 REMARK 500 13 SER A 27 -166.98 -106.36 REMARK 500 13 VAL A 74 -11.83 -47.44 REMARK 500 13 LYS A 89 -101.64 -67.44 REMARK 500 13 PHE A 90 37.33 28.66 REMARK 500 14 ASP A 4 74.98 60.37 REMARK 500 14 THR A 5 97.30 -56.66 REMARK 500 14 GLN A 22 40.14 39.50 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 196 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASP A 21 OD1 96.2 REMARK 620 3 ASP A 21 OD2 105.0 13.9 REMARK 620 4 ASN A 23 OD1 104.9 104.5 111.5 REMARK 620 5 ASN A 23 ND2 57.1 118.8 132.6 49.6 REMARK 620 6 TYR A 25 O 84.3 175.8 162.5 79.3 64.9 REMARK 620 7 GLU A 30 OE2 63.7 55.1 53.6 152.2 119.4 121.9 REMARK 620 8 GLU A 30 OE1 74.7 98.3 90.3 157.0 120.0 77.8 48.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 209 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD2 REMARK 620 2 ASP A 55 OD1 40.9 REMARK 620 3 ASP A 57 OD1 66.4 54.1 REMARK 620 4 ASP A 57 OD2 108.8 82.6 43.3 REMARK 620 5 ASP A 59 OD2 89.8 112.7 66.8 74.5 REMARK 620 6 ASP A 59 OD1 45.3 78.5 62.4 98.1 45.2 REMARK 620 7 GLN A 61 O 75.3 115.7 115.8 137.8 63.5 54.0 REMARK 620 8 GLU A 66 OE2 125.4 87.0 99.5 68.0 134.7 161.3 144.6 REMARK 620 9 GLU A 66 OE1 118.2 105.6 146.5 115.4 141.5 146.5 96.7 49.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 209 DBREF 2KN2 A 4 75 UNP Q39890 Q39890_SOYBN 79 150 SEQADV 2KN2 GLY A 1 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 HIS A 2 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 MET A 3 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 76 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 77 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 78 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 79 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 80 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 ASN A 81 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 GLY A 82 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 TRP A 83 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 SER A 84 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 ARG A 85 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 LEU A 86 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 ARG A 87 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 ARG A 88 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 LYS A 89 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 PHE A 90 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 SER A 91 UNP Q39890 EXPRESSION TAG SEQADV 2KN2 SER A 92 UNP Q39890 EXPRESSION TAG SEQRES 1 A 92 GLY HIS MET ASP THR ASP ALA GLU GLU GLU LEU LYS GLU SEQRES 2 A 92 ALA PHE LYS VAL PHE ASP LYS ASP GLN ASN GLY TYR ILE SEQRES 3 A 92 SER ALA SER GLU LEU ARG HIS VAL MET ILE ASN LEU GLY SEQRES 4 A 92 GLU LYS LEU THR ASP GLU GLU VAL GLU GLN MET ILE LYS SEQRES 5 A 92 GLU ALA ASP LEU ASP GLY ASP GLY GLN VAL ASN TYR GLU SEQRES 6 A 92 GLU PHE VAL LYS MET MET MET THR VAL ARG GLY GLY GLY SEQRES 7 A 92 GLY GLY ASN GLY TRP SER ARG LEU ARG ARG LYS PHE SER SEQRES 8 A 92 SER HET CA A 196 1 HET CA A 209 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 THR A 5 ASP A 19 1 15 HELIX 2 2 SER A 27 LEU A 38 1 12 HELIX 3 3 THR A 43 ASP A 55 1 13 HELIX 4 4 TYR A 64 ARG A 75 1 12 HELIX 5 5 GLY A 80 SER A 91 1 12 SHEET 1 A 2 TYR A 25 ILE A 26 0 SHEET 2 A 2 VAL A 62 ASN A 63 -1 O VAL A 62 N ILE A 26 LINK OD1 ASP A 19 CA CA A 196 1555 1555 2.59 LINK OD1 ASP A 21 CA CA A 196 1555 1555 4.59 LINK OD2 ASP A 21 CA CA A 196 1555 1555 2.60 LINK OD1 ASN A 23 CA CA A 196 1555 1555 2.57 LINK ND2 ASN A 23 CA CA A 196 1555 1555 2.67 LINK O TYR A 25 CA CA A 196 1555 1555 2.58 LINK OE2 GLU A 30 CA CA A 196 1555 1555 2.63 LINK OE1 GLU A 30 CA CA A 196 1555 1555 2.60 LINK OD2 ASP A 55 CA CA A 209 1555 1555 3.29 LINK OD1 ASP A 55 CA CA A 209 1555 1555 2.58 LINK OD1 ASP A 57 CA CA A 209 1555 1555 2.60 LINK OD2 ASP A 57 CA CA A 209 1555 1555 3.10 LINK OD2 ASP A 59 CA CA A 209 1555 1555 2.95 LINK OD1 ASP A 59 CA CA A 209 1555 1555 2.57 LINK O GLN A 61 CA CA A 209 1555 1555 2.60 LINK OE2 GLU A 66 CA CA A 209 1555 1555 2.58 LINK OE1 GLU A 66 CA CA A 209 1555 1555 2.59 SITE 1 AC1 5 ASP A 19 ASP A 21 ASN A 23 TYR A 25 SITE 2 AC1 5 GLU A 30 SITE 1 AC2 6 ASP A 55 ASP A 57 ASP A 59 GLN A 61 SITE 2 AC2 6 ASN A 63 GLU A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1