HEADER APOPTOSIS 20-AUG-09 2KNA TITLE SOLUTION STRUCTURE OF UBA DOMAIN OF XIAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN, RESIDUES IN UNP 357-449; COMPND 5 SYNONYM: E3 UBIQUITIN-PROTEIN LIGASE XIAP, INHIBITOR OF APOPTOSIS COMPND 6 PROTEIN 3, X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP, COMPND 7 IAP-LIKE PROTEIN, HILP; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: XIAP, API3, BIRC4, IAP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32A KEYWDS XIAP, UBA, APOPTOSIS, LIGASE, METAL-BINDING, PHOSPHOPROTEIN, PROTEASE KEYWDS 2 INHIBITOR, THIOL PROTEASE INHIBITOR, UBL CONJUGATION PATHWAY, ZINC- KEYWDS 3 FINGER EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.K.HUI,M.K.TSE,K.H.SZE REVDAT 1 01-SEP-10 2KNA 0 JRNL AUTH S.K.HUI,M.K.TSE,Y.YANG,B.C.WONG,K.H.SZE JRNL TITL BACKBONE AND SIDE-CHAIN 1H, 13C AND 15N ASSIGNMENTS OF THE JRNL TITL 2 UBIQUITIN-ASSOCIATED DOMAIN OF HUMAN X-LINKED INHIBITOR OF JRNL TITL 3 APOPTOSIS PROTEIN JRNL REF BIOMOL.NMR ASSIGN. V. 4 13 2010 JRNL REFN ISSN 1874-2718 JRNL PMID 19916060 JRNL DOI 10.1007/S12104-009-9197-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KNA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101332. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM BIS-TRIS-1, 100MM SODIUM REMARK 210 CHLORIDE-2, 5MM DTT-3, 1MM PMSF- REMARK 210 4, 0.5MM [U-99% 13C; U-99% 15N] REMARK 210 UBA-5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 100 99.78 -61.32 REMARK 500 2 ASP A 6 67.26 -105.64 REMARK 500 2 GLN A 87 -56.04 -126.97 REMARK 500 3 SER A 9 -74.27 -101.19 REMARK 500 3 LEU A 17 -81.78 -94.35 REMARK 500 3 GLN A 87 -66.11 -139.48 REMARK 500 3 GLU A 89 57.21 -118.48 REMARK 500 4 GLN A 100 89.47 -68.45 REMARK 500 5 SER A 16 -168.17 -119.07 REMARK 500 5 LEU A 17 98.83 -61.12 REMARK 500 5 SER A 85 -42.37 -131.14 REMARK 500 6 MET A 77 -44.59 -134.57 REMARK 500 8 SER A 16 171.53 -55.82 REMARK 500 8 LEU A 17 106.81 -58.60 REMARK 500 8 ARG A 20 172.22 -54.49 REMARK 500 8 ASP A 79 89.89 -61.45 REMARK 500 8 THR A 84 45.33 -75.91 REMARK 500 9 MET A 4 60.80 37.06 REMARK 500 9 GLN A 100 24.50 47.86 REMARK 500 10 GLU A 12 57.19 -96.69 REMARK 500 10 LEU A 17 -81.10 -75.83 REMARK 500 10 ASP A 75 16.97 57.50 REMARK 500 10 LEU A 86 79.15 -111.02 REMARK 500 11 ARG A 20 108.54 -55.42 REMARK 500 11 GLU A 80 15.41 58.53 REMARK 500 13 GLU A 10 -53.64 -128.43 REMARK 500 14 ALA A 3 -60.94 -150.62 REMARK 500 14 ASP A 6 78.30 -108.36 REMARK 500 14 GLU A 10 -66.02 -125.12 REMARK 500 15 ARG A 19 -54.52 -157.13 REMARK 500 15 LYS A 74 96.47 -61.56 REMARK 500 15 SER A 91 38.99 -71.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 2KNA A 12 104 UNP P98170 XIAP_HUMAN 357 449 SEQADV 2KNA GLY A 1 UNP P98170 EXPRESSION TAG SEQADV 2KNA SER A 2 UNP P98170 EXPRESSION TAG SEQADV 2KNA ALA A 3 UNP P98170 EXPRESSION TAG SEQADV 2KNA MET A 4 UNP P98170 EXPRESSION TAG SEQADV 2KNA ALA A 5 UNP P98170 EXPRESSION TAG SEQADV 2KNA ASP A 6 UNP P98170 EXPRESSION TAG SEQADV 2KNA ILE A 7 UNP P98170 EXPRESSION TAG SEQADV 2KNA GLY A 8 UNP P98170 EXPRESSION TAG SEQADV 2KNA SER A 9 UNP P98170 EXPRESSION TAG SEQADV 2KNA GLU A 10 UNP P98170 EXPRESSION TAG SEQADV 2KNA PHE A 11 UNP P98170 EXPRESSION TAG SEQRES 1 A 104 GLY SER ALA MET ALA ASP ILE GLY SER GLU PHE GLU LYS SEQRES 2 A 104 THR PRO SER LEU THR ARG ARG ILE ASP ASP THR ILE PHE SEQRES 3 A 104 GLN ASN PRO MET VAL GLN GLU ALA ILE ARG MET GLY PHE SEQRES 4 A 104 SER PHE LYS ASP ILE LYS LYS ILE MET GLU GLU LYS ILE SEQRES 5 A 104 GLN ILE SER GLY SER ASN TYR LYS SER LEU GLU VAL LEU SEQRES 6 A 104 VAL ALA ASP LEU VAL ASN ALA GLN LYS ASP SER MET GLN SEQRES 7 A 104 ASP GLU SER SER GLN THR SER LEU GLN LYS GLU ILE SER SEQRES 8 A 104 THR GLU GLU GLN LEU ARG ARG LEU GLN GLU GLU LYS LEU HELIX 1 1 ASP A 22 ASN A 28 1 7 HELIX 2 2 PRO A 29 MET A 37 1 9 HELIX 3 3 SER A 40 GLY A 56 1 17 HELIX 4 4 SER A 61 ASP A 75 1 15 HELIX 5 5 SER A 91 LEU A 96 1 6 HELIX 6 6 ARG A 97 LEU A 99 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1