HEADER METAL TRANSPORT 21-AUG-09 2KNE TITLE CALMODULIN WRAPS AROUND ITS BINDING DOMAIN IN THE PLASMA MEMBRANE CA2+ TITLE 2 PUMP ANCHORED BY A NOVEL 18-1 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATPASE, CA++ TRANSPORTING, PLASMA MEMBRANE 4; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 1086-1113, C28; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CALMODULIN BINDING DOMAIN OF PMCA C-TAIL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: BL21(DE3)-PLYSS; SOURCE 6 GENE: CALM, CALM1, CALM2, CALM3, CALML2, CAM, CAM1, CAM2, CAM3, SOURCE 7 CAMB, CAMC, CAMIII; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PET-15B; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 STRAIN: BL21(DE3); SOURCE 18 GENE: ATP2B4, HCG_18445, RP11-397P13.1-001; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 23 EXPRESSION_SYSTEM_VECTOR: PET-15B KEYWDS PROTEIN/PEPTIDE, CALCIUM PUMP, CALMODULIN, ACETYLATION, CALCIUM, KEYWDS 2 ISOPEPTIDE BOND, METHYLATION, PHOSPHOPROTEIN, POLYMORPHISM, UBL KEYWDS 3 CONJUGATION, ATP-BINDING, HYDROLASE, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 4 TRANSMEMBRANE, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.JURANIC,E.ATANASOVA,A.G.FILOTEO,S.MACURA,F.G.PRENDERGAST, AUTHOR 2 J.T.PENNISTON,E.E.STREHLER REVDAT 7 08-MAY-24 2KNE 1 REMARK REVDAT 6 14-JUN-23 2KNE 1 REMARK LINK REVDAT 5 26-FEB-20 2KNE 1 REMARK REVDAT 4 23-FEB-10 2KNE 1 JRNL REVDAT 3 05-JAN-10 2KNE 1 AUTHOR REVDAT 2 15-DEC-09 2KNE 1 AUTHOR REVDAT 1 24-NOV-09 2KNE 0 JRNL AUTH N.JURANIC,E.ATANASOVA,A.G.FILOTEO,S.MACURA,F.G.PRENDERGAST, JRNL AUTH 2 J.T.PENNISTON,E.E.STREHLER JRNL TITL CALMODULIN WRAPS AROUND ITS BINDING DOMAIN IN THE PLASMA JRNL TITL 2 MEMBRANE CA2+ PUMP ANCHORED BY A NOVEL 18-1 MOTIF. JRNL REF J.BIOL.CHEM. V. 285 4015 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19996092 JRNL DOI 10.1074/JBC.M109.060491 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.19, X-PLOR NIH 2.19, PROCHECK REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH), LASKOWSKI, MACARTHUR, SMITH, JONES, REMARK 3 HUTCHINSON, MORRIS, MOSS AND THO (PROCHECK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT ALSO USES THE PROTEIN REMARK 3 (CALMODULIN) & PEPTIDE (C28) RESIDUAL DIPOLAR COUPLINGS REMARK 3 (BACKBONE NH, NCO AND COCA) MEASURED IN A PHAGE-FILAMENTS REMARK 3 ORIENTED MEDIA. REMARK 4 REMARK 4 2KNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000101336. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.5; 7.5 REMARK 210 IONIC STRENGTH : 0.1; 0.1 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY_1-1, 95% H2O/5% D2O; 1-2 REMARK 210 MM [U-99% 13C; U-99% 15N] ENTITY_ REMARK 210 1-2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-COSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX FELIX NMR 2007, PROCHECK, REMARK 210 PREDITOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 7 -36.03 -32.84 REMARK 500 1 ASN A 42 64.77 -114.74 REMARK 500 1 SER A 81 -19.99 -37.68 REMARK 500 1 ILE A 85 -74.67 -62.43 REMARK 500 1 THR A 146 35.91 -79.04 REMARK 500 1 ALA A 147 -97.84 -47.16 REMARK 500 1 GLN B1103 -57.81 -27.55 REMARK 500 2 ASP A 2 -80.30 -40.08 REMARK 500 2 LEU A 4 -32.42 155.58 REMARK 500 2 GLU A 7 -37.88 -34.59 REMARK 500 2 SER A 81 -20.89 -36.89 REMARK 500 2 ILE A 85 -74.37 -61.96 REMARK 500 2 THR A 146 32.39 -87.53 REMARK 500 2 GLN B1103 -60.20 -27.31 REMARK 500 3 GLN A 3 88.77 168.08 REMARK 500 3 GLU A 7 -38.13 -36.44 REMARK 500 3 ASN A 42 63.44 -115.67 REMARK 500 3 ASP A 80 134.84 126.15 REMARK 500 3 SER A 81 -17.16 -37.61 REMARK 500 3 ILE A 85 -74.40 -61.10 REMARK 500 3 THR A 146 33.47 -89.27 REMARK 500 3 GLN B1103 -60.18 -27.57 REMARK 500 4 GLU A 7 -36.33 -34.80 REMARK 500 4 SER A 81 -20.26 -37.42 REMARK 500 4 ILE A 85 -74.46 -61.04 REMARK 500 4 THR A 146 -124.65 -85.67 REMARK 500 4 GLN B1103 -57.78 -27.79 REMARK 500 5 GLN A 3 99.97 157.68 REMARK 500 5 GLU A 7 -38.64 -33.80 REMARK 500 5 SER A 81 -21.30 -37.44 REMARK 500 5 ILE A 85 -73.65 -62.57 REMARK 500 5 GLN B1103 -57.95 -27.57 REMARK 500 5 SER B1112 92.51 85.75 REMARK 500 6 GLN A 3 92.17 156.18 REMARK 500 6 GLU A 7 -37.77 -34.83 REMARK 500 6 SER A 81 -20.86 -37.80 REMARK 500 6 ILE A 85 -74.11 -60.11 REMARK 500 6 ALA A 147 100.12 -35.46 REMARK 500 6 ARG B1087 -157.47 -158.76 REMARK 500 6 GLN B1103 -57.08 -27.98 REMARK 500 7 GLN A 3 103.08 159.54 REMARK 500 7 GLU A 7 -36.01 -34.17 REMARK 500 7 ASN A 42 66.15 -113.00 REMARK 500 7 SER A 81 -21.10 -37.04 REMARK 500 7 ILE A 85 -74.94 -70.79 REMARK 500 7 THR A 146 32.17 -89.97 REMARK 500 7 ARG B1087 40.50 -79.43 REMARK 500 7 GLN B1103 -59.46 -27.61 REMARK 500 7 HIS B1111 20.46 -68.78 REMARK 500 7 SER B1112 84.58 60.86 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 151 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 157.0 REMARK 620 3 ASP A 24 OD1 120.5 72.9 REMARK 620 4 THR A 26 O 92.2 110.4 53.7 REMARK 620 5 GLU A 31 OE1 114.5 73.0 109.9 85.7 REMARK 620 6 GLU A 31 OE2 68.4 115.9 137.6 86.3 46.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 49.6 REMARK 620 3 ASN A 60 OD1 56.9 56.2 REMARK 620 4 THR A 62 O 59.4 98.5 54.5 REMARK 620 5 GLU A 67 OE1 72.5 106.8 124.8 82.5 REMARK 620 6 GLU A 67 OE2 73.8 74.0 124.8 119.9 46.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 153 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 69.7 REMARK 620 3 ASN A 97 OD1 63.2 78.9 REMARK 620 4 TYR A 99 O 64.6 127.1 57.7 REMARK 620 5 GLU A 104 OE1 93.7 125.3 140.1 83.5 REMARK 620 6 GLU A 104 OE2 90.1 80.3 150.6 123.7 46.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 154 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD1 74.8 REMARK 620 3 ASP A 133 OD1 61.7 80.0 REMARK 620 4 GLN A 135 O 87.4 144.0 64.0 REMARK 620 5 GLU A 140 OE1 92.5 127.5 137.8 83.4 REMARK 620 6 GLU A 140 OE2 89.5 81.4 148.9 130.3 47.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16465 RELATED DB: BMRB DBREF 2KNE A 1 148 UNP P62158 CALM_HUMAN 2 149 DBREF 2KNE B 1086 1113 UNP B1APW6 B1APW6_HUMAN 1086 1113 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 28 LEU ARG ARG GLY GLN ILE LEU TRP PHE ARG GLY LEU ASN SEQRES 2 B 28 ARG ILE GLN THR GLN ILE LYS VAL VAL LYS ALA PHE HIS SEQRES 3 B 28 SER SER HET CA A 151 1 HET CA A 152 1 HET CA A 153 1 HET CA A 154 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) HELIX 1 1 THR A 5 ASP A 20 1 16 HELIX 2 2 THR A 28 LEU A 39 1 12 HELIX 3 3 GLU A 45 ASP A 56 1 12 HELIX 4 4 ASP A 64 LYS A 75 1 12 HELIX 5 5 GLU A 82 VAL A 91 1 10 HELIX 6 6 SER A 101 ASN A 111 1 11 HELIX 7 7 ASP A 118 ASP A 129 1 12 HELIX 8 8 ASN A 137 MET A 145 1 9 HELIX 9 108 GLY B 1089 PHE B 1110 1 22 LINK OD1 ASP A 20 CA CA A 151 1555 1555 2.83 LINK OD1 ASP A 22 CA CA A 151 1555 1555 2.87 LINK OD1 ASP A 24 CA CA A 151 1555 1555 2.75 LINK O THR A 26 CA CA A 151 1555 1555 2.62 LINK OE1 GLU A 31 CA CA A 151 1555 1555 2.62 LINK OE2 GLU A 31 CA CA A 151 1555 1555 2.85 LINK OD1 ASP A 56 CA CA A 152 1555 1555 2.95 LINK OD1 ASP A 58 CA CA A 152 1555 1555 2.68 LINK OD1 ASN A 60 CA CA A 152 1555 1555 2.85 LINK O THR A 62 CA CA A 152 1555 1555 2.59 LINK OE1 GLU A 67 CA CA A 152 1555 1555 2.72 LINK OE2 GLU A 67 CA CA A 152 1555 1555 2.69 LINK OD1 ASP A 93 CA CA A 153 1555 1555 2.76 LINK OD1 ASP A 95 CA CA A 153 1555 1555 2.62 LINK OD1 ASN A 97 CA CA A 153 1555 1555 2.75 LINK O TYR A 99 CA CA A 153 1555 1555 2.60 LINK OE1 GLU A 104 CA CA A 153 1555 1555 2.78 LINK OE2 GLU A 104 CA CA A 153 1555 1555 2.61 LINK OD1 ASP A 129 CA CA A 154 1555 1555 2.70 LINK OD1 ASP A 131 CA CA A 154 1555 1555 2.56 LINK OD1 ASP A 133 CA CA A 154 1555 1555 2.67 LINK O GLN A 135 CA CA A 154 1555 1555 2.55 LINK OE1 GLU A 140 CA CA A 154 1555 1555 2.80 LINK OE2 GLU A 140 CA CA A 154 1555 1555 2.57 SITE 1 AC1 5 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 5 GLU A 31 SITE 1 AC2 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 6 ASP A 64 GLU A 67 SITE 1 AC3 5 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC3 5 GLU A 104 SITE 1 AC4 5 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC4 5 GLU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1