HEADER BLOOD CLOTTING 21-AUG-09 2KNF TITLE SOLUTION STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF HUMAN TITLE 2 PLASMINOGEN KRINGLE 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLG; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: (MET+) KEYWDS BLOOD COAGULATION, CLEAVAGE ON PAIR OF BASIC RESIDUES, DISEASE KEYWDS 2 MUTATION, DISULFIDE BOND, FIBRINOLYSIS, GLYCOPROTEIN, HYDROLASE, KEYWDS 3 KRINGLE, PHOSPHOPROTEIN, POLYMORPHISM, PROTEASE, SECRETED, SERINE KEYWDS 4 PROTEASE, THROMBOPHILIA, TISSUE REMODELING, ZYMOGEN, ANTIANGIOGENIC, KEYWDS 5 BLOOD CLOTTING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.BATTISTEL,A.GRISHAEV,S.A.AN,F.J.CASTELLINO,M.LLINAS REVDAT 4 13-OCT-21 2KNF 1 SEQADV REVDAT 3 26-FEB-20 2KNF 1 REMARK SEQADV REVDAT 2 10-NOV-09 2KNF 1 JRNL REVDAT 1 27-OCT-09 2KNF 0 JRNL AUTH M.D.BATTISTEL,A.GRISHAEV,S.S.AN,F.J.CASTELLINO,M.LLINAS JRNL TITL SOLUTION STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF HUMAN JRNL TITL 2 PLASMINOGEN KRINGLE 5. JRNL REF BIOCHEMISTRY V. 48 10208 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19821587 JRNL DOI 10.1021/BI901433N REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, J.P. ET AL. (ARIA), LINGE, J.P. ET AL. REMARK 3 (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000101337. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 11 MM REMARK 210 AMCHA, 2.2 MM RK5, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 2D 1H-1H NOESY; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 23 O TYR A 64 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 45.18 -108.27 REMARK 500 1 LYS A 12 20.06 -148.87 REMARK 500 1 PRO A 30 32.10 -89.43 REMARK 500 1 SER A 34 29.63 -75.23 REMARK 500 1 PRO A 42 36.61 -71.16 REMARK 500 1 LYS A 48 -107.57 50.75 REMARK 500 1 PRO A 68 0.04 -65.75 REMARK 500 1 ASP A 76 71.47 -119.69 REMARK 500 2 TYR A 9 98.49 -65.42 REMARK 500 2 ARG A 10 44.47 -102.96 REMARK 500 2 LYS A 12 15.60 -144.35 REMARK 500 2 PRO A 30 37.05 -90.41 REMARK 500 2 SER A 34 35.46 -77.29 REMARK 500 2 PRO A 42 35.39 -71.04 REMARK 500 2 LYS A 48 -124.96 50.65 REMARK 500 2 PRO A 68 0.21 -65.02 REMARK 500 2 ASP A 76 73.82 -114.57 REMARK 500 2 ALA A 81 49.60 -85.10 REMARK 500 3 ASP A -1 51.41 -90.45 REMARK 500 3 LYS A 12 13.89 -141.73 REMARK 500 3 SER A 34 30.49 -81.74 REMARK 500 3 LYS A 48 -106.46 44.12 REMARK 500 3 PRO A 68 4.62 -69.10 REMARK 500 3 ASP A 76 60.99 -115.70 REMARK 500 4 ARG A 10 51.26 -102.24 REMARK 500 4 LYS A 12 16.79 -142.21 REMARK 500 4 SER A 34 31.42 -74.10 REMARK 500 4 PRO A 42 20.33 -77.53 REMARK 500 4 LYS A 48 -105.98 48.63 REMARK 500 4 ASN A 49 11.62 -141.67 REMARK 500 4 PRO A 68 5.95 -68.66 REMARK 500 4 ASP A 76 60.71 -118.76 REMARK 500 5 ASP A -1 48.12 -80.43 REMARK 500 5 LYS A 12 19.04 -140.48 REMARK 500 5 VAL A 14 33.62 -140.29 REMARK 500 5 PRO A 30 31.98 -90.04 REMARK 500 5 SER A 34 35.84 -78.19 REMARK 500 5 PRO A 42 4.15 -64.48 REMARK 500 5 LYS A 48 -113.65 49.96 REMARK 500 5 ASN A 49 19.63 -140.69 REMARK 500 6 LYS A 12 22.07 -150.29 REMARK 500 6 PRO A 30 35.65 -94.24 REMARK 500 6 SER A 34 39.11 -77.47 REMARK 500 6 LYS A 48 -111.47 51.82 REMARK 500 6 THR A 66 33.54 -83.86 REMARK 500 6 PRO A 68 5.71 -70.00 REMARK 500 6 ASP A 76 56.20 -112.92 REMARK 500 6 ALA A 81 58.97 -93.33 REMARK 500 7 LYS A 12 20.94 -145.07 REMARK 500 7 SER A 34 32.15 -77.89 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16466 RELATED DB: BMRB DBREF 2KNF A -1 82 UNP P00747 PLMN_HUMAN 480 562 SEQADV 2KNF SER A -4 UNP P00747 EXPRESSION TAG SEQADV 2KNF ASN A -3 UNP P00747 EXPRESSION TAG SEQADV 2KNF ALA A -2 UNP P00747 EXPRESSION TAG SEQADV 2KNF VAL A 14 UNP P00747 ALA 494 ENGINEERED MUTATION SEQRES 1 A 86 SER ASN ALA ASP CYS MET PHE GLY ASN GLY LYS GLY TYR SEQRES 2 A 86 ARG GLY LYS ARG VAL THR THR VAL THR GLY THR PRO CYS SEQRES 3 A 86 GLN ASP TRP ALA ALA GLN GLU PRO HIS ARG HIS SER ILE SEQRES 4 A 86 PHE THR PRO GLU THR ASN PRO ARG ALA GLY LEU GLU LYS SEQRES 5 A 86 ASN TYR CYS ARG ASN PRO ASP GLY ASP VAL GLY GLY PRO SEQRES 6 A 86 TRP CYS TYR THR THR ASN PRO ARG LYS LEU TYR ASP TYR SEQRES 7 A 86 CYS ASP VAL PRO GLN CYS ALA ALA SHEET 1 A 2 TRP A 62 TYR A 64 0 SHEET 2 A 2 TYR A 72 TYR A 74 -1 O ASP A 73 N CYS A 63 SSBOND 1 CYS A 1 CYS A 80 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 63 1555 1555 2.03 SSBOND 3 CYS A 51 CYS A 75 1555 1555 2.02 CISPEP 1 GLU A 29 PRO A 30 1 0.72 CISPEP 2 GLU A 29 PRO A 30 2 0.73 CISPEP 3 GLU A 29 PRO A 30 3 0.53 CISPEP 4 GLU A 29 PRO A 30 4 1.18 CISPEP 5 GLU A 29 PRO A 30 5 1.27 CISPEP 6 GLU A 29 PRO A 30 6 -0.69 CISPEP 7 GLU A 29 PRO A 30 7 0.65 CISPEP 8 GLU A 29 PRO A 30 8 2.35 CISPEP 9 GLU A 29 PRO A 30 9 1.67 CISPEP 10 GLU A 29 PRO A 30 10 -0.20 CISPEP 11 GLU A 29 PRO A 30 11 0.06 CISPEP 12 GLU A 29 PRO A 30 12 1.64 CISPEP 13 GLU A 29 PRO A 30 13 0.80 CISPEP 14 GLU A 29 PRO A 30 14 1.15 CISPEP 15 GLU A 29 PRO A 30 15 1.64 CISPEP 16 GLU A 29 PRO A 30 16 1.55 CISPEP 17 GLU A 29 PRO A 30 17 0.18 CISPEP 18 GLU A 29 PRO A 30 18 1.26 CISPEP 19 GLU A 29 PRO A 30 19 0.76 CISPEP 20 GLU A 29 PRO A 30 20 1.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1