HEADER PROTEIN TRANSPORT 31-AUG-09 2KNQ TITLE SOLUTION STRUCTURE OF E.COLI GSPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL SECRETION PATHWAY PROTEIN H; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ECOLC_0384; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-21A KEYWDS GSPH, MINOR PSEUDOPILIN, METHYLATION, TRANSPORT PROTEIN, PROTEIN KEYWDS 2 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ZHANG,C.JIN REVDAT 1 08-SEP-10 2KNQ 0 JRNL AUTH Y.ZHANG,C.JIN JRNL TITL SOLUTION STRUCTURE OF GSPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KNQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101348. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C; U-100% 15N] REMARK 210 GSPH-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW 5, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 5 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 6 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 9 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 9 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 11 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 11 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 11 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 12 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 13 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 13 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 14 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 14 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 15 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 72 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 43 27.17 -150.74 REMARK 500 1 ASP A 44 -66.97 63.08 REMARK 500 1 LYS A 54 -44.46 59.05 REMARK 500 1 ASP A 67 -26.80 -149.95 REMARK 500 1 ALA A 68 24.55 -68.95 REMARK 500 1 ASN A 74 -34.58 46.95 REMARK 500 1 GLU A 78 17.87 -142.90 REMARK 500 1 PHE A 87 -171.43 -67.84 REMARK 500 1 ASP A 91 46.60 -69.78 REMARK 500 1 ALA A 137 -97.98 40.36 REMARK 500 2 GLU A 6 -36.60 -137.26 REMARK 500 2 PRO A 37 154.04 -42.26 REMARK 500 2 TRP A 59 105.56 -53.14 REMARK 500 2 GLN A 65 -18.94 -48.36 REMARK 500 2 ASP A 75 29.94 -157.49 REMARK 500 2 GLU A 79 17.02 -156.47 REMARK 500 2 ASP A 91 38.43 -73.99 REMARK 500 2 LEU A 132 168.49 74.29 REMARK 500 2 ALA A 137 63.20 32.07 REMARK 500 2 ARG A 138 24.01 47.72 REMARK 500 3 ALA A 2 -172.18 -68.66 REMARK 500 3 TYR A 3 -7.84 -59.71 REMARK 500 3 ARG A 5 71.66 -64.19 REMARK 500 3 PRO A 37 157.46 -47.05 REMARK 500 3 LEU A 64 10.91 -66.98 REMARK 500 3 ASP A 67 -20.88 -146.27 REMARK 500 3 ALA A 69 -169.25 54.29 REMARK 500 3 SER A 72 8.87 -63.64 REMARK 500 3 ASN A 74 -158.36 48.48 REMARK 500 3 ASP A 75 -6.76 56.75 REMARK 500 3 GLU A 78 18.53 -141.88 REMARK 500 3 GLU A 79 4.49 -151.05 REMARK 500 3 GLN A 85 114.44 -172.81 REMARK 500 3 PRO A 86 156.40 -47.74 REMARK 500 3 PHE A 87 -171.80 79.31 REMARK 500 3 LEU A 121 -47.12 -131.86 REMARK 500 3 ALA A 137 59.28 30.05 REMARK 500 3 ARG A 138 28.26 47.10 REMARK 500 4 GLU A 6 -16.76 -143.56 REMARK 500 4 PRO A 37 153.01 -42.12 REMARK 500 4 ASP A 67 -36.71 -149.46 REMARK 500 4 ALA A 68 29.46 -71.74 REMARK 500 4 GLU A 71 -33.74 -130.27 REMARK 500 4 ASN A 74 -1.32 40.64 REMARK 500 4 GLU A 78 -6.77 -141.97 REMARK 500 4 GLU A 79 18.34 -141.98 REMARK 500 4 ASP A 90 -44.95 70.96 REMARK 500 4 LEU A 121 -51.76 -122.64 REMARK 500 4 ALA A 137 63.10 28.82 REMARK 500 4 ARG A 138 25.77 46.46 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 19 0.10 SIDE CHAIN REMARK 500 2 ARG A 19 0.09 SIDE CHAIN REMARK 500 3 ARG A 19 0.09 SIDE CHAIN REMARK 500 18 ARG A 48 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KNQ A 3 142 UNP B1IPX0 B1IPX0_ECOLC 30 169 SEQADV 2KNQ MET A 1 UNP B1IPX0 EXPRESSION TAG SEQADV 2KNQ ALA A 2 UNP B1IPX0 EXPRESSION TAG SEQRES 1 A 142 MET ALA TYR GLY ARG GLU ASP VAL ALA ASN THR ARG ALA SEQRES 2 A 142 ARG GLU THR ALA ALA ARG PHE THR ALA ALA LEU GLU LEU SEQRES 3 A 142 ALA ILE ASP ARG ALA THR LEU SER GLY GLN PRO VAL GLY SEQRES 4 A 142 ILE HIS PHE SER ASP SER ALA TRP ARG ILE MET VAL PRO SEQRES 5 A 142 GLY LYS THR PRO SER ALA TRP ARG TRP VAL PRO LEU GLN SEQRES 6 A 142 GLU ASP ALA ALA ASP GLU SER GLN ASN ASP TRP ASP GLU SEQRES 7 A 142 GLU LEU SER ILE HIS LEU GLN PRO PHE LYS PRO ASP ASP SEQRES 8 A 142 SER ASN GLN PRO GLN VAL VAL ILE LEU ALA ASP GLY GLN SEQRES 9 A 142 ILE THR PRO PHE SER LEU LEU MET ALA ASN ALA GLY THR SEQRES 10 A 142 GLY GLU PRO LEU LEU THR LEU VAL CYS SER GLY SER TRP SEQRES 11 A 142 PRO LEU ASP GLN THR LEU ALA ARG ASP THR ARG PRO HELIX 1 1 GLU A 6 GLY A 35 1 30 SHEET 1 A 4 VAL A 62 PRO A 63 0 SHEET 2 A 4 TRP A 47 VAL A 51 -1 N VAL A 51 O VAL A 62 SHEET 3 A 4 VAL A 38 PHE A 42 -1 N HIS A 41 O ARG A 48 SHEET 4 A 4 VAL A 97 ILE A 99 -1 O ILE A 99 N VAL A 38 SHEET 1 B 4 LEU A 80 GLN A 85 0 SHEET 2 B 4 PHE A 108 ASN A 114 -1 O LEU A 111 N HIS A 83 SHEET 3 B 4 PRO A 120 CYS A 126 -1 O LEU A 124 N LEU A 110 SHEET 4 B 4 ASP A 133 LEU A 136 -1 O ASP A 133 N VAL A 125 CISPEP 1 GLN A 85 PRO A 86 1 0.91 CISPEP 2 TRP A 130 PRO A 131 1 -11.29 CISPEP 3 GLN A 85 PRO A 86 2 -8.95 CISPEP 4 TRP A 130 PRO A 131 2 -2.54 CISPEP 5 GLN A 85 PRO A 86 3 -10.19 CISPEP 6 TRP A 130 PRO A 131 3 -11.32 CISPEP 7 GLN A 85 PRO A 86 4 0.73 CISPEP 8 TRP A 130 PRO A 131 4 -11.20 CISPEP 9 GLN A 85 PRO A 86 5 -2.54 CISPEP 10 TRP A 130 PRO A 131 5 -11.16 CISPEP 11 GLN A 85 PRO A 86 6 -3.45 CISPEP 12 TRP A 130 PRO A 131 6 -11.10 CISPEP 13 GLN A 85 PRO A 86 7 -10.29 CISPEP 14 TRP A 130 PRO A 131 7 -11.35 CISPEP 15 GLN A 85 PRO A 86 8 -9.99 CISPEP 16 TRP A 130 PRO A 131 8 -11.27 CISPEP 17 GLN A 85 PRO A 86 9 -0.52 CISPEP 18 TRP A 130 PRO A 131 9 -11.27 CISPEP 19 GLN A 85 PRO A 86 10 -9.97 CISPEP 20 TRP A 130 PRO A 131 10 -11.20 CISPEP 21 GLN A 85 PRO A 86 11 -9.77 CISPEP 22 TRP A 130 PRO A 131 11 -11.25 CISPEP 23 GLN A 85 PRO A 86 12 -3.45 CISPEP 24 TRP A 130 PRO A 131 12 -11.29 CISPEP 25 GLN A 85 PRO A 86 13 2.50 CISPEP 26 TRP A 130 PRO A 131 13 -11.35 CISPEP 27 GLN A 85 PRO A 86 14 -4.17 CISPEP 28 TRP A 130 PRO A 131 14 -11.21 CISPEP 29 GLN A 85 PRO A 86 15 -0.93 CISPEP 30 TRP A 130 PRO A 131 15 -11.38 CISPEP 31 GLN A 85 PRO A 86 16 -8.20 CISPEP 32 TRP A 130 PRO A 131 16 -11.49 CISPEP 33 GLN A 85 PRO A 86 17 -10.36 CISPEP 34 TRP A 130 PRO A 131 17 -11.37 CISPEP 35 GLN A 85 PRO A 86 18 -9.62 CISPEP 36 TRP A 130 PRO A 131 18 -11.25 CISPEP 37 GLN A 85 PRO A 86 19 -8.79 CISPEP 38 TRP A 130 PRO A 131 19 -10.98 CISPEP 39 GLN A 85 PRO A 86 20 -10.10 CISPEP 40 TRP A 130 PRO A 131 20 -11.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1