HEADER MEMBRANE PROTEIN 08-SEP-09 2KO2 TITLE NOGO66 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULON-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 1025-1090); COMPND 5 SYNONYM: NEURITE OUTGROWTH INHIBITOR, NOGO PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KIAA0886, NOGO, RTN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS NOGO, MEMBRANE PROTEIN, PERIPHERAL, DPC MICELLE, MYELIN INHIBITOR, KEYWDS 2 ENDOPLASMIC RETICULUM, MEMBRANE, PHOSPHOPROTEIN, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.J.COCCO,J.SCHULZ,S.V.VASUDEVAN REVDAT 4 22-MAY-24 2KO2 1 REMARK REVDAT 3 16-MAR-22 2KO2 1 REMARK SEQADV REVDAT 2 11-AUG-10 2KO2 1 JRNL REVDAT 1 21-APR-10 2KO2 0 JRNL AUTH S.V.VASUDEVAN,J.SCHULZ,C.ZHOU,M.J.COCCO JRNL TITL PROTEIN FOLDING AT THE MEMBRANE INTERFACE, THE STRUCTURE OF JRNL TITL 2 NOGO-66 REQUIRES INTERACTIONS WITH A PHOSPHOCHOLINE SURFACE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 6847 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20351248 JRNL DOI 10.1073/PNAS.0911817107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.20, X-PLOR NIH 2.20 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH WAS USED FOR REFINING THE REMARK 3 FOLDED PROTEINS. DIHERAL ANGLE RESTRAINTS AND PRE RESTRAINTS REMARK 3 WERE ADDED DURING REFINEMENT. REMARK 4 REMARK 4 2KO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000101359. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 0.0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM NOGO-B, 90% H2O/10% REMARK 210 D2O; 0.5-1.0 MM NOGO-B, 90% H2O/ REMARK 210 10% D2O; 0.5-1.0 MM NOGO-B, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-1H TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 1.0.15, NMRDRAW 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 54.49 -69.67 REMARK 500 1 SER A 26 0.88 -61.18 REMARK 500 1 HIS A 30 55.93 35.00 REMARK 500 1 SER A 43 -44.11 -15.68 REMARK 500 1 SER A 53 48.24 -79.82 REMARK 500 1 LEU A 65 -71.05 -53.49 REMARK 500 1 ASP A 72 70.22 49.50 REMARK 500 2 SER A 26 -77.00 173.44 REMARK 500 2 ASP A 27 37.44 -152.69 REMARK 500 2 PHE A 32 -6.39 -45.72 REMARK 500 2 SER A 43 -44.45 -15.17 REMARK 500 2 SER A 53 46.98 -85.90 REMARK 500 2 LEU A 65 -28.51 -35.69 REMARK 500 2 SER A 77 -10.57 -47.68 REMARK 500 3 SER A 26 103.81 54.78 REMARK 500 3 ASP A 27 -31.76 148.05 REMARK 500 3 PHE A 32 -74.87 -34.22 REMARK 500 3 SER A 43 -40.41 -20.34 REMARK 500 3 SER A 53 49.51 -93.81 REMARK 500 3 LEU A 65 -37.19 -36.03 REMARK 500 3 ASP A 72 70.98 39.52 REMARK 500 4 GLU A 28 59.94 -148.11 REMARK 500 4 PHE A 32 -16.93 -39.71 REMARK 500 4 SER A 43 -31.31 -23.71 REMARK 500 4 GLU A 45 85.55 -173.77 REMARK 500 4 SER A 53 59.99 -109.34 REMARK 500 4 LEU A 65 -17.68 -37.86 REMARK 500 5 SER A 26 12.27 49.40 REMARK 500 5 PHE A 32 -93.14 -132.41 REMARK 500 5 SER A 43 -41.23 -17.85 REMARK 500 5 SER A 53 37.45 -74.16 REMARK 500 5 LEU A 65 -20.09 -36.43 REMARK 500 5 SER A 77 8.39 -65.68 REMARK 500 6 SER A 26 -100.41 -170.41 REMARK 500 6 ASP A 27 31.37 -146.51 REMARK 500 6 PHE A 32 67.70 -55.54 REMARK 500 6 SER A 43 -35.40 -23.22 REMARK 500 6 SER A 53 56.74 -96.40 REMARK 500 6 LEU A 65 -24.75 -35.32 REMARK 500 6 ASP A 72 76.48 46.18 REMARK 500 6 SER A 77 15.35 -69.20 REMARK 500 7 SER A 26 96.66 53.40 REMARK 500 7 ASP A 27 -30.86 153.88 REMARK 500 7 PRO A 31 22.85 -73.02 REMARK 500 7 PHE A 32 -78.86 -31.97 REMARK 500 7 SER A 43 -43.75 -18.21 REMARK 500 7 SER A 53 47.54 -87.49 REMARK 500 7 SER A 77 20.34 -74.79 REMARK 500 7 LEU A 78 70.62 62.46 REMARK 500 8 SER A 26 116.82 82.72 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KO2 A 14 79 UNP Q99P72 RTN4_MOUSE 1025 1090 SEQADV 2KO2 MET A 1 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 2 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 3 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 4 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 5 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 6 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 HIS A 7 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 LEU A 8 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 VAL A 9 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 PRO A 10 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 ARG A 11 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 GLY A 12 UNP Q99P72 EXPRESSION TAG SEQADV 2KO2 MET A 13 UNP Q99P72 EXPRESSION TAG SEQRES 1 A 79 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY MET SEQRES 2 A 79 ARG ILE TYR LYS GLY VAL ILE GLN ALA ILE GLN LYS SER SEQRES 3 A 79 ASP GLU GLY HIS PRO PHE ARG ALA TYR LEU GLU SER GLU SEQRES 4 A 79 VAL ALA ILE SER GLU GLU LEU VAL GLN LYS TYR SER ASN SEQRES 5 A 79 SER ALA LEU GLY HIS VAL ASN SER THR ILE LYS GLU LEU SEQRES 6 A 79 ARG ARG LEU PHE LEU VAL ASP ASP LEU VAL ASP SER LEU SEQRES 7 A 79 LYS HELIX 1 1 ARG A 14 VAL A 19 1 6 HELIX 2 2 VAL A 19 LYS A 25 1 7 HELIX 3 3 PHE A 32 SER A 43 1 12 HELIX 4 4 GLU A 45 SER A 53 1 9 HELIX 5 5 GLY A 56 ASP A 72 1 17 HELIX 6 6 VAL A 75 LYS A 79 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1