HEADER TRANSCRIPTION 09-SEP-09 2KO4 OBSLTE 22-FEB-12 2KO4 2LPB TITLE COMPLEX STRUCTURE OF THE ACTIVATION DOMAIN OF GCN4 BOUND TO THE TITLE 2 MEDIATOR CO-ACTIVATOR DOMAIN OF GAL11/MED15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-238; COMPND 5 SYNONYM: MEDIATOR COMPLEX SUBUNIT 15, TRANSCRIPTION REGULATORY COMPND 6 PROTEIN GAL11, BASAL EXPRESSION ACTIVATOR PROTEIN 1, AUTONOMOUS COMPND 7 REPLICATION REGULATORY PROTEIN 3, DEFECTIVE SILENCING SUPPRESSOR COMPND 8 PROTEIN 4, TY INSERTION SUPPRESSOR PROTEIN 13; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 101-134; COMPND 14 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GAL11, ABE1, MED15, RAR3, SDS4, SPT13, YOL051W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 GENE: GCN4, AAS3, ARG9, YEL009C; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PETSUMO KEYWDS GAL11, GCN4, MEDIATOR, ACTIVATOR, CO-ACTIVATOR, MED15, TRANSCRIPTION, KEYWDS 2 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION REGULATION, AMINO-ACID KEYWDS 3 BIOSYNTHESIS, DNA-BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.HEIKAUS,L.KISSELEV,R.VERNON,E.HERBIG,D.BAKER,P.S.BRZOVIC,S.HAHN, AUTHOR 2 R.E.KLEVIT REVDAT 2 22-FEB-12 2KO4 1 OBSLTE VERSN REVDAT 1 29-SEP-10 2KO4 0 JRNL AUTH C.C.HEIKAUS,L.KISSELEV,R.VERNON,E.HERBIG,D.BAKER, JRNL AUTH 2 P.S.BRZOVIC,R.E.KLEVIT,S.HAHN JRNL TITL COMPLEX STRUCTURE OF THE ACTIVATION DOMAIN OF GCN4 BOUND TO JRNL TITL 2 THE MEDIATOR CO-ACTIVATOR DOMAIN OF GAL11/MED15 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101361. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-1.2 MM [U-15N] GAL11-1, 1 MM REMARK 210 PMSF-2, 5 MM DTT-3, 20 MM SODIUM REMARK 210 PHOSPHATE-4, 150 MM SODIUM REMARK 210 CHLORIDE-5, 2-2,4 MM GCN4-6, 90% REMARK 210 H2O/10% D2O; 1-1.2 MM GAL11-7, 1 REMARK 210 MM PMSF-8, 5 MM DTT-9, 20 MM REMARK 210 SODIUM PHOSPHATE-10, 150 MM REMARK 210 SODIUM CHLORIDE-11, 2-2,4 MM [U- REMARK 210 15N] GCN4-12, 90% H2O/10% D2O; 1- REMARK 210 1.2 MM [U-13C; U-15N] GAL11-13, 1 REMARK 210 MM PMSF-14, 5 MM DTT-15, 20 MM REMARK 210 SODIUM PHOSPHATE-16, 150 MM REMARK 210 SODIUM CHLORIDE-17, 2-2,4 MM REMARK 210 GCN4-18, 90% H2O/10% D2O; 1-1.2 REMARK 210 MM [U-13C; U-15N] GAL11-19, 1 MM REMARK 210 PMSF-20, 5 MM DTT-21, 20 MM REMARK 210 SODIUM PHOSPHATE-22, 150 MM REMARK 210 SODIUM CHLORIDE-23, 2-2,4 MM REMARK 210 GCN4-24, 100% D2O; 1-1.2 MM REMARK 210 GAL11-25, 1 MM PMSF-26, 5 MM DTT- REMARK 210 27, 20 MM SODIUM PHOSPHATE-28, REMARK 210 150 MM SODIUM CHLORIDE-29, 2-2,4 REMARK 210 MM [U-13C; U-15N] GCN4-30, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HNCO; 3D HNCACB; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 CC(CO)NH TOCSY; 3D HC(CO)NH TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE, CYANA, CNS, REMARK 210 TOPSPIN, VNMR, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 178 O ASN A 194 1.49 REMARK 500 O PRO A 179 H LEU A 183 1.50 REMARK 500 O LEU A 183 H ILE A 186 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 218 CD GLU A 218 OE2 0.075 REMARK 500 2 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 3 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 4 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 5 GLU A 218 CD GLU A 218 OE2 0.076 REMARK 500 6 GLU A 218 CD GLU A 218 OE1 0.075 REMARK 500 7 GLU A 218 CD GLU A 218 OE2 0.076 REMARK 500 8 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 9 GLU A 218 CD GLU A 218 OE2 0.077 REMARK 500 10 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 11 GLU A 218 CD GLU A 218 OE1 0.077 REMARK 500 12 GLU A 218 CD GLU A 218 OE1 0.075 REMARK 500 13 GLU A 218 CD GLU A 218 OE1 0.075 REMARK 500 14 GLU A 218 CD GLU A 218 OE1 0.077 REMARK 500 15 GLU A 218 CD GLU A 218 OE2 0.076 REMARK 500 16 GLU A 218 CD GLU A 218 OE1 0.076 REMARK 500 17 GLU A 218 CD GLU A 218 OE2 0.076 REMARK 500 18 GLU A 218 CD GLU A 218 OE1 0.077 REMARK 500 19 GLU A 218 CD GLU A 218 OE1 0.075 REMARK 500 20 GLU A 218 CD GLU A 218 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 163 -179.35 -69.46 REMARK 500 1 VAL A 175 19.52 -141.32 REMARK 500 1 ILE A 189 109.39 -174.41 REMARK 500 1 ILE A 193 -72.76 -80.73 REMARK 500 1 ASN A 194 27.71 48.77 REMARK 500 1 LYS A 206 15.88 87.18 REMARK 500 1 ASP B 103 129.09 63.26 REMARK 500 1 MET B 107 -28.95 174.77 REMARK 500 1 GLU B 109 -60.69 -101.77 REMARK 500 1 ASN B 126 97.50 56.35 REMARK 500 1 ASP B 127 -39.56 -132.19 REMARK 500 2 LEU A 162 -168.90 -127.10 REMARK 500 2 VAL A 175 18.74 -142.70 REMARK 500 2 ILE A 189 109.87 -172.42 REMARK 500 2 ILE A 193 -73.76 -80.63 REMARK 500 2 ASN A 194 26.51 48.87 REMARK 500 2 LYS A 206 17.49 85.85 REMARK 500 2 GLU B 109 -66.62 -98.78 REMARK 500 2 ASP B 115 -79.03 -95.52 REMARK 500 2 ASN B 116 -41.20 -157.90 REMARK 500 2 ASN B 126 101.99 65.01 REMARK 500 2 ASP B 127 -42.24 -135.18 REMARK 500 2 THR B 132 -46.91 -139.70 REMARK 500 2 ASP B 133 -44.11 -134.29 REMARK 500 3 THR A 163 -179.23 -69.45 REMARK 500 3 VAL A 175 18.61 -144.05 REMARK 500 3 ILE A 189 108.90 -172.17 REMARK 500 3 ILE A 193 -73.28 -80.58 REMARK 500 3 ASN A 194 27.27 49.62 REMARK 500 3 LYS A 206 16.96 86.62 REMARK 500 3 ASP B 103 -42.89 -130.15 REMARK 500 3 PRO B 106 -100.93 -74.66 REMARK 500 3 ASP B 115 -88.70 -143.17 REMARK 500 3 ASN B 116 -44.20 -158.39 REMARK 500 3 ASP B 133 102.46 64.24 REMARK 500 4 THR A 163 -178.21 -69.16 REMARK 500 4 VAL A 175 25.85 -144.93 REMARK 500 4 ILE A 189 109.46 -171.89 REMARK 500 4 ILE A 193 -72.69 -80.25 REMARK 500 4 ASN A 194 28.71 48.54 REMARK 500 4 LYS A 206 15.24 87.75 REMARK 500 4 THR B 102 -46.60 -137.77 REMARK 500 4 PRO B 106 -106.09 -76.86 REMARK 500 4 ASN B 116 -36.57 -134.42 REMARK 500 4 THR B 131 -36.49 -139.36 REMARK 500 5 THR A 163 -179.38 -69.44 REMARK 500 5 ILE A 189 108.06 -168.63 REMARK 500 5 ILE A 193 -73.88 -81.15 REMARK 500 5 ASN A 194 29.93 47.92 REMARK 500 5 LYS A 206 17.27 88.31 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KO4 A 158 238 UNP P19659 MED15_YEAST 158 238 DBREF 2KO4 B 101 134 UNP P03069 GCN4_YEAST 101 134 SEQRES 1 A 81 GLN ARG ARG GLN LEU THR PRO GLN GLN GLN GLN LEU VAL SEQRES 2 A 81 ASN GLN MET LYS VAL ALA PRO ILE PRO LYS GLN LEU LEU SEQRES 3 A 81 GLN ARG ILE PRO ASN ILE PRO PRO ASN ILE ASN THR TRP SEQRES 4 A 81 GLN GLN VAL THR ALA LEU ALA GLN GLN LYS LEU LEU THR SEQRES 5 A 81 PRO GLN ASP MET GLU ALA ALA LYS GLU VAL TYR LYS ILE SEQRES 6 A 81 HIS GLN GLN LEU LEU PHE LYS ALA ARG LEU GLN GLN GLN SEQRES 7 A 81 GLN ALA GLN SEQRES 1 B 34 SER THR ASP SER THR PRO MET PHE GLU TYR GLU ASN LEU SEQRES 2 B 34 GLU ASP ASN SER LYS GLU TRP THR SER LEU PHE ASP ASN SEQRES 3 B 34 ASP ILE PRO VAL THR THR ASP ASP HELIX 1 1 THR A 163 ASN A 171 1 9 HELIX 2 2 GLN A 172 VAL A 175 5 4 HELIX 3 3 PRO A 179 GLN A 184 1 6 HELIX 4 4 THR A 195 GLN A 204 1 10 HELIX 5 5 THR A 209 GLN A 236 1 28 HELIX 6 6 SER B 117 THR B 121 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1