HEADER TRANSCRIPTION 09-SEP-09 2KO5 OBSLTE 30-JAN-13 2KO5 2M1S TITLE NMR SOLUTION STRUCTURE OF LFV-Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN Z; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN Z, ZINC-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LASSA VIRUS JOSIAH; SOURCE 3 ORGANISM_TAXID: 11622; SOURCE 4 STRAIN: JOSIAH; SOURCE 5 GENE: Z; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS LASSA FEVER VIRUS-Z, RING, NEGATIVE REGULATOR OF EIF4E, HOST-VIRUS KEYWDS 2 INTERACTION, LIPOPROTEIN, MEMBRANE, METAL-BINDING, MYRISTATE, KEYWDS 3 VIRION, ZINC-FINGER, METAL BINDING PROTEIN, TRANSCRIPTION REGULATOR, KEYWDS 4 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.VOLPON,M.J.OSBORNE,K.L.B.BORDEN REVDAT 2 30-JAN-13 2KO5 1 OBSLTE VERSN REVDAT 1 21-APR-10 2KO5 0 JRNL AUTH L.VOLPON,M.J.OSBORNE,A.A.CAPUL,J.C.DE LA TORRE,K.L.BORDEN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE Z RING-EIF4E COMPLEX JRNL TITL 2 REVEALS A DISTINCT MODE OF CONTROL FOR EIF4E. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 5441 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20212144 JRNL DOI 10.1073/PNAS.0909877107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, X-PLOR REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 , (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB101362. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-100% 15N] RING FINGER REMARK 210 PROTEIN Z, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 200 MM SODIUM REMARK 210 CHLORIDE, 3 MM SODIUM AZIDE, 0.05 REMARK 210 MM TCEP, 0.05 MM ZINC ION, 93% REMARK 210 H2O/7% D2O; 0.2 MM [U-100% 13C; U REMARK 210 -100% 15N] RING FINGER PROTEIN Z, REMARK 210 20 MM POTASSIUM PHOSPHATE, 200 MM REMARK 210 SODIUM CHLORIDE, 3 MM SODIUM REMARK 210 AZIDE, 0.05 MM TCEP, 0.05 MM ZINC REMARK 210 ION, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH -TOCSY; 3D REMARK 210 HNHA; 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D HBHA(CO) NH; 2D 15N- REMARK 210 HSQC OPTIMIZED FOR HIS; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, SPARKY, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 31 ZN ZN A 100 1.38 REMARK 500 HG CYS A 53 ZN ZN A 100 1.42 REMARK 500 HG CYS A 67 ZN ZN A 101 1.49 REMARK 500 HG CYS A 64 ZN ZN A 101 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 85.05 53.28 REMARK 500 1 SER A 14 90.25 53.30 REMARK 500 1 SER A 18 -72.19 -108.17 REMARK 500 1 TRP A 35 169.80 172.56 REMARK 500 1 ASN A 45 -70.30 -53.42 REMARK 500 1 LEU A 58 143.05 61.48 REMARK 500 1 VAL A 60 59.14 -150.90 REMARK 500 1 LEU A 71 71.35 -113.60 REMARK 500 1 LEU A 75 179.92 53.28 REMARK 500 1 SER A 91 91.27 52.03 REMARK 500 1 TYR A 97 -46.07 -141.15 REMARK 500 2 GLN A 5 50.15 -114.12 REMARK 500 2 SER A 14 -59.44 -179.80 REMARK 500 2 ALA A 17 -179.30 53.38 REMARK 500 2 TRP A 35 168.26 171.56 REMARK 500 2 ASN A 45 -70.49 -54.09 REMARK 500 2 LEU A 58 156.05 61.63 REMARK 500 2 VAL A 60 58.53 -148.93 REMARK 500 2 LEU A 71 58.99 -142.75 REMARK 500 2 THR A 73 -176.54 -61.29 REMARK 500 2 ARG A 76 83.50 -167.25 REMARK 500 3 GLU A 10 -90.25 53.72 REMARK 500 3 ARG A 16 85.41 52.29 REMARK 500 3 SER A 18 89.43 50.44 REMARK 500 3 LEU A 26 -72.96 -59.08 REMARK 500 3 TRP A 35 175.57 173.63 REMARK 500 3 ASN A 45 -70.64 -54.55 REMARK 500 3 LEU A 58 157.84 61.94 REMARK 500 3 ASN A 62 -51.99 -126.09 REMARK 500 3 ALA A 80 87.53 51.86 REMARK 500 3 ARG A 93 73.85 -166.14 REMARK 500 3 TYR A 97 81.86 52.46 REMARK 500 4 GLN A 5 50.93 -117.27 REMARK 500 4 SER A 11 -176.22 52.62 REMARK 500 4 ALA A 17 96.13 -64.01 REMARK 500 4 LEU A 26 -57.80 -159.20 REMARK 500 4 GLN A 29 -78.53 -147.15 REMARK 500 4 TRP A 35 173.29 173.27 REMARK 500 4 ASN A 45 -71.09 -52.81 REMARK 500 4 LEU A 58 139.47 61.38 REMARK 500 4 ALA A 80 67.18 -167.40 REMARK 500 4 SER A 98 88.38 -154.95 REMARK 500 5 ALA A 6 92.80 54.03 REMARK 500 5 ALA A 8 162.63 59.36 REMARK 500 5 ILE A 20 88.75 -157.80 REMARK 500 5 ASP A 22 52.65 -93.43 REMARK 500 5 ALA A 23 74.57 52.70 REMARK 500 5 TRP A 35 -174.18 171.13 REMARK 500 5 ASN A 45 -70.51 -53.58 REMARK 500 5 LEU A 58 155.23 62.77 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.22 SIDE CHAIN REMARK 500 1 ARG A 76 0.08 SIDE CHAIN REMARK 500 1 ARG A 93 0.26 SIDE CHAIN REMARK 500 2 ARG A 16 0.22 SIDE CHAIN REMARK 500 2 ARG A 76 0.09 SIDE CHAIN REMARK 500 2 ARG A 93 0.27 SIDE CHAIN REMARK 500 3 ARG A 16 0.22 SIDE CHAIN REMARK 500 3 ARG A 76 0.08 SIDE CHAIN REMARK 500 3 ARG A 93 0.27 SIDE CHAIN REMARK 500 4 ARG A 16 0.22 SIDE CHAIN REMARK 500 4 ARG A 76 0.08 SIDE CHAIN REMARK 500 4 ARG A 93 0.26 SIDE CHAIN REMARK 500 5 ARG A 16 0.22 SIDE CHAIN REMARK 500 5 ARG A 76 0.08 SIDE CHAIN REMARK 500 5 ARG A 93 0.26 SIDE CHAIN REMARK 500 6 ARG A 16 0.22 SIDE CHAIN REMARK 500 6 ARG A 76 0.08 SIDE CHAIN REMARK 500 6 ARG A 93 0.26 SIDE CHAIN REMARK 500 7 ARG A 16 0.22 SIDE CHAIN REMARK 500 7 ARG A 76 0.09 SIDE CHAIN REMARK 500 7 ARG A 93 0.26 SIDE CHAIN REMARK 500 8 ARG A 16 0.22 SIDE CHAIN REMARK 500 8 ARG A 76 0.08 SIDE CHAIN REMARK 500 8 ARG A 93 0.26 SIDE CHAIN REMARK 500 9 ARG A 16 0.22 SIDE CHAIN REMARK 500 9 ARG A 76 0.08 SIDE CHAIN REMARK 500 9 ARG A 93 0.27 SIDE CHAIN REMARK 500 10 ARG A 16 0.22 SIDE CHAIN REMARK 500 10 ARG A 76 0.09 SIDE CHAIN REMARK 500 10 ARG A 93 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 CYS A 67 SG 109.9 REMARK 620 3 CYS A 44 SG 103.4 109.5 REMARK 620 4 CYS A 64 SG 112.8 109.4 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 50 SG REMARK 620 2 CYS A 34 SG 104.7 REMARK 620 3 CYS A 53 SG 104.3 112.9 REMARK 620 4 CYS A 31 SG 113.4 106.6 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15660 RELATED DB: BMRB DBREF 2KO5 A 1 99 UNP O73557 Z_LASSJ 1 99 SEQRES 1 A 99 MET GLY ASN LYS GLN ALA LYS ALA PRO GLU SER LYS ASP SEQRES 2 A 99 SER PRO ARG ALA SER LEU ILE PRO ASP ALA THR HIS LEU SEQRES 3 A 99 GLY PRO GLN PHE CYS LYS SER CYS TRP PHE GLU ASN LYS SEQRES 4 A 99 GLY LEU VAL GLU CYS ASN ASN HIS TYR LEU CYS LEU ASN SEQRES 5 A 99 CYS LEU THR LEU LEU LEU SER VAL SER ASN ARG CYS PRO SEQRES 6 A 99 ILE CYS LYS MET PRO LEU PRO THR LYS LEU ARG PRO SER SEQRES 7 A 99 ALA ALA PRO THR ALA PRO PRO THR GLY ALA ALA ASP SER SEQRES 8 A 99 ILE ARG PRO PRO PRO TYR SER PRO HET ZN A 100 1 HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 LEU A 51 LEU A 57 1 7 SHEET 1 A 2 LEU A 41 GLU A 43 0 SHEET 2 A 2 TYR A 48 CYS A 50 -1 O LEU A 49 N VAL A 42 SHEET 1 B 2 ARG A 63 CYS A 64 0 SHEET 2 B 2 MET A 69 PRO A 70 -1 O MET A 69 N CYS A 64 LINK ND1 HIS A 47 ZN ZN A 101 1555 1555 2.01 LINK SG CYS A 50 ZN ZN A 100 1555 1555 2.29 LINK SG CYS A 34 ZN ZN A 100 1555 1555 2.30 LINK SG CYS A 67 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 44 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 53 ZN ZN A 100 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A 100 1555 1555 2.30 LINK SG CYS A 64 ZN ZN A 101 1555 1555 2.31 SITE 1 AC1 3 CYS A 31 SER A 33 TRP A 35 SITE 1 AC2 4 CYS A 44 ASN A 45 ASN A 46 HIS A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1