HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-SEP-09 2KO6 TITLE SOLUTION STRUCTURE OF PROTEIN SF3929 FROM SHIGELLA FLEXNERI 2A. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SFR81/ONTARIO CENTER TITLE 3 FOR STRUCTURAL PROTEOMICS TARGET SF3929 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YIHD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: YIHD, S3818, SF3929; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: P15TVLIC KEYWDS ALPHA PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, ONTARIO KEYWDS 3 CENTRE FOR STRUCTURAL PROTEOMICS, OCSP, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,A.YEE,C.FARES,A.LEMAK,A.SEMEST,C.H.ARROWSMITH,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR STRUCTURAL AUTHOR 3 PROTEOMICS (OCSP) REVDAT 3 26-FEB-20 2KO6 1 REMARK REVDAT 2 18-JAN-12 2KO6 1 REMARK VERSN REVDAT 1 22-SEP-09 2KO6 0 JRNL AUTH B.WU,A.YEE,C.FARES,A.LEMAK,A.SEMEST,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN SF3929 FROM SHIGELLA FLEXNERI JRNL TITL 2 2A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 SFR81/ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET SF3929 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000101363. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 SF3929, 10 MM [U-100% 2H] TRIS, REMARK 210 300 MM SODIUM CHLORIDE, 10 UM REMARK 210 ZINC SULPHATE, 10 MM [U-100% 2H] REMARK 210 DTT, 10 MM BENZAMIDINE, 1 X REMARK 210 INHIBITOR COCKTAIL, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNCA; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MDDGUI 1.0, SPARKY 3.95, FAWN REMARK 210 1.0, CYANA 2.1, AUTOSTRUCTURE, REMARK 210 PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 20 68.92 -153.13 REMARK 500 1 ASP A 62 109.78 -160.77 REMARK 500 1 LYS A 70 95.01 61.09 REMARK 500 1 ALA A 83 -82.05 -71.60 REMARK 500 1 ARG A 84 145.07 63.45 REMARK 500 2 GLU A 20 87.68 -164.17 REMARK 500 2 LEU A 45 108.51 -57.43 REMARK 500 2 GLN A 69 -40.44 -132.60 REMARK 500 2 TYR A 72 114.54 67.90 REMARK 500 3 CYS A 3 80.52 61.50 REMARK 500 3 GLU A 20 78.89 -161.50 REMARK 500 3 ALA A 60 79.50 -68.48 REMARK 500 3 LEU A 68 -164.33 61.49 REMARK 500 3 LYS A 70 -32.32 81.41 REMARK 500 4 GLU A 20 82.10 -160.91 REMARK 500 4 ASN A 24 -169.42 -68.58 REMARK 500 4 LEU A 45 108.13 -53.96 REMARK 500 4 ALA A 60 -175.45 -67.35 REMARK 500 4 GLN A 69 89.61 53.03 REMARK 500 4 TYR A 72 93.50 65.65 REMARK 500 4 ASP A 75 33.07 -157.85 REMARK 500 4 ARG A 84 -76.76 53.81 REMARK 500 4 LYS A 88 -60.38 -172.44 REMARK 500 5 ASP A 62 83.60 162.34 REMARK 500 5 VAL A 86 77.32 53.95 REMARK 500 5 LYS A 88 -82.72 66.51 REMARK 500 6 CYS A 3 81.60 61.63 REMARK 500 6 GLU A 20 66.15 -156.20 REMARK 500 6 ASN A 24 -172.46 -69.63 REMARK 500 6 ALA A 60 -85.40 62.61 REMARK 500 6 GLU A 74 -86.29 -69.45 REMARK 500 7 CYS A 3 43.14 -85.62 REMARK 500 7 GLU A 20 77.20 -150.72 REMARK 500 7 LEU A 45 109.49 -56.21 REMARK 500 7 GLN A 69 -66.13 -130.03 REMARK 500 7 TYR A 72 75.91 56.07 REMARK 500 8 LYS A 2 -55.75 -148.21 REMARK 500 8 GLU A 20 72.83 -152.71 REMARK 500 8 ASN A 24 -178.81 -64.50 REMARK 500 8 ALA A 60 89.63 -59.88 REMARK 500 8 LYS A 61 176.59 65.52 REMARK 500 8 ASP A 62 -74.22 69.91 REMARK 500 8 ASP A 71 99.94 -57.35 REMARK 500 8 ALA A 83 -72.31 -82.65 REMARK 500 8 ARG A 84 -80.06 56.98 REMARK 500 8 LYS A 88 -167.10 59.78 REMARK 500 9 LYS A 2 86.52 58.96 REMARK 500 9 GLU A 20 83.93 -161.78 REMARK 500 9 LEU A 68 -179.48 66.99 REMARK 500 9 GLN A 69 81.41 62.43 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SFR81 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16490 RELATED DB: BMRB DBREF 2KO6 A 1 89 UNP Q83IV8 Q83IV8_SHIFL 1 89 SEQRES 1 A 89 MET LYS CYS LYS ARG LEU ASN GLU VAL ILE GLU LEU LEU SEQRES 2 A 89 GLN PRO ALA TRP GLN LYS GLU PRO ASP PHE ASN LEU LEU SEQRES 3 A 89 GLN PHE LEU GLN LYS LEU ALA LYS GLU SER GLY PHE ASP SEQRES 4 A 89 GLY GLU LEU ALA ASP LEU THR ASP ASP ILE LEU ILE TYR SEQRES 5 A 89 HIS LEU LYS MET ARG ASP SER ALA LYS ASP ALA VAL ILE SEQRES 6 A 89 PRO GLY LEU GLN LYS ASP TYR GLU GLU ASP PHE LYS THR SEQRES 7 A 89 ALA LEU LEU ARG ALA ARG GLY VAL ILE LYS GLU HELIX 1 1 CYS A 3 LEU A 13 1 11 HELIX 2 2 LEU A 13 LYS A 19 1 7 HELIX 3 3 ASN A 24 SER A 36 1 13 HELIX 4 4 THR A 46 ALA A 60 1 15 HELIX 5 5 ASP A 75 ARG A 84 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1