HEADER PROTEIN BINDING 22-SEP-09 2KOH TITLE NMR STRUCTURE OF MOUSE PAR3-PDZ3 IN COMPLEX WITH VE-CADHERIN C- TITLE 2 TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTITIONING DEFECTIVE 3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 581-689, PDZ 3 DOMAIN; COMPND 5 SYNONYM: PARD-3, PAR-3, ATYPICAL PKC ISOTYPE-SPECIFIC-INTERACTING COMPND 6 PROTEIN, ASIP, EPHRIN-INTERACTING PROTEIN, PHIP; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CADHERIN-5; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 769-784; COMPND 12 SYNONYM: VASCULAR ENDOTHELIAL CADHERIN, VE-CADHERIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PAR3, PARD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG130099[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE30-8HT; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: CDH5, VE-CADHERIN; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: SG130099[PREP4]; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PQE30-SMT KEYWDS PAR3, PDZ DOMAIN, VE CADHERIN, ALTERNATIVE SPLICING, CELL CYCLE, CELL KEYWDS 2 DIVISION, CELL JUNCTION, COILED COIL, CYTOPLASM, CYTOSKELETON, KEYWDS 3 MEMBRANE, PHOSPHOPROTEIN, TIGHT JUNCTION, CALCIUM, CELL ADHESION, KEYWDS 4 CELL MEMBRANE, CLEAVAGE ON PAIR OF BASIC RESIDUES, GLYCOPROTEIN, KEYWDS 5 TRANSMEMBRANE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,R.C.TYLER,F.C.PETERSON REVDAT 3 16-MAR-22 2KOH 1 REMARK SEQADV REVDAT 2 23-FEB-10 2KOH 1 JRNL REVDAT 1 09-FEB-10 2KOH 0 JRNL AUTH R.C.TYLER,F.C.PETERSON,B.F.VOLKMAN JRNL TITL DISTAL INTERACTIONS WITHIN THE PAR3-VE-CADHERIN COMPLEX. JRNL REF BIOCHEMISTRY V. 49 951 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20047332 JRNL DOI 10.1021/BI9017335 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 1868 REMARK 3 NOE CONSTRAINTS ( 434 INTRA, 383 SEQUENTIAL, 254 MEDIUM, AND 797 REMARK 3 LONG RANGE) AND 114 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2KOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000101374. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 53 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MMPAR3 PDZ3-1, 2 MM MMVE- REMARK 210 CADHERIN-2, 20 MM SODIUM REMARK 210 PHOSPHATE-3, 50 MM SODIUM REMARK 210 CHLORIDE-4, 10 % D2O-5, 0.02 % REMARK 210 SODIUM AZIDE-6, 90% H2O, 10% D2O; REMARK 210 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MMVE-CADHERIN-7, 1 MM MMPAR3 REMARK 210 PDZ3-8, 20 MM SODIUM PHOSPHATE-9, REMARK 210 50 MM SODIUM CHLORIDE-10, 10 % REMARK 210 D2O-11, 0.02 % SODIUM CHLORIDE- REMARK 210 12, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C-SEPARATED_NOESY (AROMATIC); 3D_13C-F1- REMARK 210 FILTERED_13C-F3-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE 2007, XEASY REMARK 210 1.3, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 581 -66.02 -137.19 REMARK 500 1 ASN A 594 -68.13 -106.47 REMARK 500 1 LEU A 651 93.91 -66.05 REMARK 500 1 ALA B 771 82.53 63.51 REMARK 500 1 LEU B 773 -165.93 60.53 REMARK 500 1 GLN B 779 93.08 58.44 REMARK 500 2 ASN A 594 -74.88 -119.88 REMARK 500 2 ALA A 599 -67.28 -135.44 REMARK 500 2 VAL A 638 129.34 94.43 REMARK 500 2 GLU B 772 124.36 64.94 REMARK 500 2 LEU B 773 178.09 68.24 REMARK 500 2 GLN B 779 84.80 50.63 REMARK 500 3 SER A 580 -179.82 66.09 REMARK 500 3 ASP A 595 -11.38 71.59 REMARK 500 3 ARG A 635 82.96 61.75 REMARK 500 3 ILE A 643 -60.89 -101.40 REMARK 500 3 GLU B 772 166.86 67.20 REMARK 500 3 GLN B 779 101.56 64.91 REMARK 500 4 ASP A 581 -45.21 74.15 REMARK 500 4 ASN A 594 -67.33 -107.99 REMARK 500 4 HIS A 614 11.90 57.53 REMARK 500 4 ARG A 635 81.58 61.93 REMARK 500 4 LEU A 650 17.58 -140.82 REMARK 500 4 SER A 685 -66.36 -131.68 REMARK 500 4 ARG A 686 -178.74 59.52 REMARK 500 4 CYS A 687 -54.57 68.16 REMARK 500 4 GLU B 772 155.61 71.70 REMARK 500 4 LEU B 773 -172.72 75.03 REMARK 500 5 ASP A 616 152.93 69.48 REMARK 500 5 ARG A 635 95.43 71.57 REMARK 500 5 LEU A 651 93.03 -69.15 REMARK 500 5 ALA B 771 94.81 -169.39 REMARK 500 6 ARG A 635 96.25 55.84 REMARK 500 6 LEU A 636 -167.72 -77.58 REMARK 500 6 ASN A 639 11.74 83.37 REMARK 500 6 LYS A 672 -53.51 -174.67 REMARK 500 6 ASN A 688 140.79 -173.02 REMARK 500 6 GLU B 772 91.07 58.26 REMARK 500 6 LEU B 773 98.98 62.37 REMARK 500 6 GLN B 779 93.66 66.40 REMARK 500 7 ASN A 594 -75.91 -105.54 REMARK 500 7 LYS A 611 119.94 -37.65 REMARK 500 7 GLU A 612 -79.18 75.48 REMARK 500 7 ASN A 613 72.30 -168.05 REMARK 500 7 ALA A 615 155.64 174.15 REMARK 500 7 ASN A 639 -0.86 84.09 REMARK 500 7 ASN A 646 18.95 57.56 REMARK 500 7 LEU A 651 99.89 -57.74 REMARK 500 7 LYS A 672 -45.49 175.62 REMARK 500 7 ILE A 684 103.14 -59.55 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 664 0.08 SIDE CHAIN REMARK 500 6 ARG A 637 0.08 SIDE CHAIN REMARK 500 9 ARG A 637 0.09 SIDE CHAIN REMARK 500 19 ARG A 637 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KOH A 581 689 UNP Q99NH2 PARD3_MOUSE 581 689 DBREF 2KOH B 769 784 UNP P55284 CADH5_MOUSE 769 784 SEQADV 2KOH GLY A 579 UNP Q99NH2 EXPRESSION TAG SEQADV 2KOH SER A 580 UNP Q99NH2 EXPRESSION TAG SEQRES 1 A 111 GLY SER ASP GLY THR ARG GLU PHE LEU THR PHE GLU VAL SEQRES 2 A 111 PRO LEU ASN ASP SER GLY SER ALA GLY LEU GLY VAL SER SEQRES 3 A 111 VAL LYS GLY ASN ARG SER LYS GLU ASN HIS ALA ASP LEU SEQRES 4 A 111 GLY ILE PHE VAL LYS SER ILE ILE ASN GLY GLY ALA ALA SEQRES 5 A 111 SER LYS ASP GLY ARG LEU ARG VAL ASN ASP GLN LEU ILE SEQRES 6 A 111 ALA VAL ASN GLY GLU SER LEU LEU GLY LYS ALA ASN GLN SEQRES 7 A 111 GLU ALA MET GLU THR LEU ARG ARG SER MET SER THR GLU SEQRES 8 A 111 GLY ASN LYS ARG GLY MET ILE GLN LEU ILE VAL ALA ARG SEQRES 9 A 111 ARG ILE SER ARG CYS ASN GLU SEQRES 1 B 16 MET LEU ALA GLU LEU TYR GLY SER ASP PRO GLN GLU GLU SEQRES 2 B 16 LEU ILE ILE HELIX 1 1 GLY A 628 ASP A 633 1 6 HELIX 2 2 ALA A 654 MET A 666 1 13 SHEET 1 A 4 ARG A 584 PRO A 592 0 SHEET 2 A 4 MET A 675 ARG A 683 -1 O ILE A 676 N VAL A 591 SHEET 3 A 4 GLN A 641 VAL A 645 -1 N ALA A 644 O ILE A 679 SHEET 4 A 4 GLU A 648 SER A 649 -1 O GLU A 648 N VAL A 645 SHEET 1 B 3 ALA A 615 ILE A 624 0 SHEET 2 B 3 VAL A 603 SER A 610 -1 N ASN A 608 O LEU A 617 SHEET 3 B 3 GLU B 781 ILE B 783 -1 O LEU B 782 N VAL A 605 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1