data_2KOJ # _entry.id 2KOJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KOJ pdb_00002koj 10.2210/pdb2koj/pdb RCSB RCSB101376 ? ? WWPDB D_1000101376 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KOJ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-23 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Volkman, B.F.' 1 'Tyler, R.C.' 2 'Peterson, F.C.' 3 'Center for Eukaryotic Structural Genomics (CESG)' 4 # _citation.id primary _citation.title 'Macromolecular Structure Determination by NMR Sepectroscopy' _citation.journal_abbrev 'Structural Bioinformatics, 2nd edition' _citation.journal_volume ? _citation.page_first 93 _citation.page_last 142 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 978-0-470-18105-8 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Markley, J.L.' 1 ? primary 'Bahrami, A.' 2 ? primary 'Eghbalnia, H.R.' 3 ? primary 'Peterson, F.C.' 4 ? primary 'Ulrich, E.L.' 5 ? primary 'Westler, W.M.' 6 ? primary 'Volkman, B.F.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Partitioning defective 3 homolog' _entity.formula_weight 12044.837 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ 2 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PARD-3, PAR-3, Atypical PKC isotype-specific-interacting protein, ASIP, Ephrin-interacting protein, PHIP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 VAL n 1 4 TYR n 1 5 ASN n 1 6 THR n 1 7 LYS n 1 8 LYS n 1 9 VAL n 1 10 GLY n 1 11 LYS n 1 12 ARG n 1 13 LEU n 1 14 ASN n 1 15 ILE n 1 16 GLN n 1 17 LEU n 1 18 LYS n 1 19 LYS n 1 20 GLY n 1 21 THR n 1 22 GLU n 1 23 GLY n 1 24 LEU n 1 25 GLY n 1 26 PHE n 1 27 SER n 1 28 ILE n 1 29 THR n 1 30 SER n 1 31 ARG n 1 32 ASP n 1 33 VAL n 1 34 THR n 1 35 ILE n 1 36 GLY n 1 37 GLY n 1 38 SER n 1 39 ALA n 1 40 PRO n 1 41 ILE n 1 42 TYR n 1 43 VAL n 1 44 LYS n 1 45 ASN n 1 46 ILE n 1 47 LEU n 1 48 PRO n 1 49 ARG n 1 50 GLY n 1 51 ALA n 1 52 ALA n 1 53 ILE n 1 54 GLN n 1 55 ASP n 1 56 GLY n 1 57 ARG n 1 58 LEU n 1 59 LYS n 1 60 ALA n 1 61 GLY n 1 62 ASP n 1 63 ARG n 1 64 LEU n 1 65 ILE n 1 66 GLU n 1 67 VAL n 1 68 ASN n 1 69 GLY n 1 70 VAL n 1 71 ASP n 1 72 LEU n 1 73 ALA n 1 74 GLY n 1 75 LYS n 1 76 SER n 1 77 GLN n 1 78 GLU n 1 79 GLU n 1 80 VAL n 1 81 VAL n 1 82 SER n 1 83 LEU n 1 84 LEU n 1 85 ARG n 1 86 SER n 1 87 THR n 1 88 LYS n 1 89 MET n 1 90 GLU n 1 91 GLY n 1 92 THR n 1 93 VAL n 1 94 SER n 1 95 LEU n 1 96 LEU n 1 97 VAL n 1 98 PHE n 1 99 ARG n 1 100 GLN n 1 101 GLU n 1 102 GLU n 1 103 ALA n 1 104 PHE n 1 105 HIS n 1 106 PRO n 1 107 ARG n 1 108 GLU n 1 109 MET n 1 110 ASN n 1 111 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Par-3, Par3, Pard3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'SG130099[pREP4]' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pQE30-8HT _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARD3_MOUSE _struct_ref.pdbx_db_accession Q99NH2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS LLRSTKMEGTVSLLVFRQEEAFHPREMNA ; _struct_ref.pdbx_align_begin 450 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KOJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99NH2 _struct_ref_seq.db_align_beg 450 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 558 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 450 _struct_ref_seq.pdbx_auth_seq_align_end 558 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KOJ GLY A 1 ? UNP Q99NH2 ? ? 'expression tag' 448 1 1 2KOJ SER A 2 ? UNP Q99NH2 ? ? 'expression tag' 449 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 '3D_13C-separated_NOESY (AROMATIC)' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 54 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1 mM [U-100% 13C; U-100% 15N] mPar3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance II' # _pdbx_nmr_refine.entry_id 2KOJ _pdbx_nmr_refine.method ;AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT ; _pdbx_nmr_refine.details ;STRUCTURES ARE BASED ON A TOTAL OF 1307 NOE CONSTRAINTS (219 INTRA, 388 SEQUENTIAL, 209 MEDIUM, AND 491 LONG RANGE) AND 117 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KOJ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KOJ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Bruker collection TopSpin 2.1 1 'Delagio,F. et al.' processing NMRPipe 2007 2 'Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.' 'data analysis' XEASY 1.3 3 'R.W. Glaser' 'data analysis' SPSCAN 1.1.0 4 'C. Bartels' 'data analysis' GARANT 2.1 5 'Guntert, P.' 'structural calculation' CYANA 2.1 6 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. refinement Xplor-NIH 2.9.3 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KOJ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KOJ _struct.title 'Solution structure of mouse Par-3 PDZ2 (residues 450-558)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KOJ _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;Par-3, PDZ domain, structural genomics, Alternative splicing, Cell cycle, Cell division, Cell junction, Coiled coil, Cytoplasm, Cytoskeleton, Membrane, Phosphoprotein, Tight junction, SIGNALING PROTEIN, PSI-2, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 50 ? GLY A 56 ? GLY A 497 GLY A 503 1 ? 7 HELX_P HELX_P2 2 SER A 76 ? THR A 87 ? SER A 523 THR A 534 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 11 ? LYS A 18 ? LYS A 458 LYS A 465 A 2 THR A 92 ? ARG A 99 ? THR A 539 ARG A 546 A 3 ARG A 63 ? VAL A 67 ? ARG A 510 VAL A 514 A 4 ILE A 41 ? ILE A 46 ? ILE A 488 ILE A 493 A 5 PHE A 26 ? SER A 30 ? PHE A 473 SER A 477 B 1 LYS A 11 ? LYS A 18 ? LYS A 458 LYS A 465 B 2 THR A 92 ? ARG A 99 ? THR A 539 ARG A 546 B 3 ARG A 63 ? VAL A 67 ? ARG A 510 VAL A 514 B 4 VAL A 70 ? ASP A 71 ? VAL A 517 ASP A 518 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 13 ? N LEU A 460 O VAL A 97 ? O VAL A 544 A 2 3 O LEU A 96 ? O LEU A 543 N GLU A 66 ? N GLU A 513 A 3 4 O LEU A 64 ? O LEU A 511 N ILE A 41 ? N ILE A 488 A 4 5 O TYR A 42 ? O TYR A 489 N THR A 29 ? N THR A 476 B 1 2 N LEU A 13 ? N LEU A 460 O VAL A 97 ? O VAL A 544 B 2 3 O LEU A 96 ? O LEU A 543 N GLU A 66 ? N GLU A 513 B 3 4 N VAL A 67 ? N VAL A 514 O VAL A 70 ? O VAL A 517 # _atom_sites.entry_id 2KOJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 448 448 GLY GLY A . n A 1 2 SER 2 449 449 SER SER A . n A 1 3 VAL 3 450 450 VAL VAL A . n A 1 4 TYR 4 451 451 TYR TYR A . n A 1 5 ASN 5 452 452 ASN ASN A . n A 1 6 THR 6 453 453 THR THR A . n A 1 7 LYS 7 454 454 LYS LYS A . n A 1 8 LYS 8 455 455 LYS LYS A . n A 1 9 VAL 9 456 456 VAL VAL A . n A 1 10 GLY 10 457 457 GLY GLY A . n A 1 11 LYS 11 458 458 LYS LYS A . n A 1 12 ARG 12 459 459 ARG ARG A . n A 1 13 LEU 13 460 460 LEU LEU A . n A 1 14 ASN 14 461 461 ASN ASN A . n A 1 15 ILE 15 462 462 ILE ILE A . n A 1 16 GLN 16 463 463 GLN GLN A . n A 1 17 LEU 17 464 464 LEU LEU A . n A 1 18 LYS 18 465 465 LYS LYS A . n A 1 19 LYS 19 466 466 LYS LYS A . n A 1 20 GLY 20 467 467 GLY GLY A . n A 1 21 THR 21 468 468 THR THR A . n A 1 22 GLU 22 469 469 GLU GLU A . n A 1 23 GLY 23 470 470 GLY GLY A . n A 1 24 LEU 24 471 471 LEU LEU A . n A 1 25 GLY 25 472 472 GLY GLY A . n A 1 26 PHE 26 473 473 PHE PHE A . n A 1 27 SER 27 474 474 SER SER A . n A 1 28 ILE 28 475 475 ILE ILE A . n A 1 29 THR 29 476 476 THR THR A . n A 1 30 SER 30 477 477 SER SER A . n A 1 31 ARG 31 478 478 ARG ARG A . n A 1 32 ASP 32 479 479 ASP ASP A . n A 1 33 VAL 33 480 480 VAL VAL A . n A 1 34 THR 34 481 481 THR THR A . n A 1 35 ILE 35 482 482 ILE ILE A . n A 1 36 GLY 36 483 483 GLY GLY A . n A 1 37 GLY 37 484 484 GLY GLY A . n A 1 38 SER 38 485 485 SER SER A . n A 1 39 ALA 39 486 486 ALA ALA A . n A 1 40 PRO 40 487 487 PRO PRO A . n A 1 41 ILE 41 488 488 ILE ILE A . n A 1 42 TYR 42 489 489 TYR TYR A . n A 1 43 VAL 43 490 490 VAL VAL A . n A 1 44 LYS 44 491 491 LYS LYS A . n A 1 45 ASN 45 492 492 ASN ASN A . n A 1 46 ILE 46 493 493 ILE ILE A . n A 1 47 LEU 47 494 494 LEU LEU A . n A 1 48 PRO 48 495 495 PRO PRO A . n A 1 49 ARG 49 496 496 ARG ARG A . n A 1 50 GLY 50 497 497 GLY GLY A . n A 1 51 ALA 51 498 498 ALA ALA A . n A 1 52 ALA 52 499 499 ALA ALA A . n A 1 53 ILE 53 500 500 ILE ILE A . n A 1 54 GLN 54 501 501 GLN GLN A . n A 1 55 ASP 55 502 502 ASP ASP A . n A 1 56 GLY 56 503 503 GLY GLY A . n A 1 57 ARG 57 504 504 ARG ARG A . n A 1 58 LEU 58 505 505 LEU LEU A . n A 1 59 LYS 59 506 506 LYS LYS A . n A 1 60 ALA 60 507 507 ALA ALA A . n A 1 61 GLY 61 508 508 GLY GLY A . n A 1 62 ASP 62 509 509 ASP ASP A . n A 1 63 ARG 63 510 510 ARG ARG A . n A 1 64 LEU 64 511 511 LEU LEU A . n A 1 65 ILE 65 512 512 ILE ILE A . n A 1 66 GLU 66 513 513 GLU GLU A . n A 1 67 VAL 67 514 514 VAL VAL A . n A 1 68 ASN 68 515 515 ASN ASN A . n A 1 69 GLY 69 516 516 GLY GLY A . n A 1 70 VAL 70 517 517 VAL VAL A . n A 1 71 ASP 71 518 518 ASP ASP A . n A 1 72 LEU 72 519 519 LEU LEU A . n A 1 73 ALA 73 520 520 ALA ALA A . n A 1 74 GLY 74 521 521 GLY GLY A . n A 1 75 LYS 75 522 522 LYS LYS A . n A 1 76 SER 76 523 523 SER SER A . n A 1 77 GLN 77 524 524 GLN GLN A . n A 1 78 GLU 78 525 525 GLU GLU A . n A 1 79 GLU 79 526 526 GLU GLU A . n A 1 80 VAL 80 527 527 VAL VAL A . n A 1 81 VAL 81 528 528 VAL VAL A . n A 1 82 SER 82 529 529 SER SER A . n A 1 83 LEU 83 530 530 LEU LEU A . n A 1 84 LEU 84 531 531 LEU LEU A . n A 1 85 ARG 85 532 532 ARG ARG A . n A 1 86 SER 86 533 533 SER SER A . n A 1 87 THR 87 534 534 THR THR A . n A 1 88 LYS 88 535 535 LYS LYS A . n A 1 89 MET 89 536 536 MET MET A . n A 1 90 GLU 90 537 537 GLU GLU A . n A 1 91 GLY 91 538 538 GLY GLY A . n A 1 92 THR 92 539 539 THR THR A . n A 1 93 VAL 93 540 540 VAL VAL A . n A 1 94 SER 94 541 541 SER SER A . n A 1 95 LEU 95 542 542 LEU LEU A . n A 1 96 LEU 96 543 543 LEU LEU A . n A 1 97 VAL 97 544 544 VAL VAL A . n A 1 98 PHE 98 545 545 PHE PHE A . n A 1 99 ARG 99 546 546 ARG ARG A . n A 1 100 GLN 100 547 547 GLN GLN A . n A 1 101 GLU 101 548 548 GLU GLU A . n A 1 102 GLU 102 549 549 GLU GLU A . n A 1 103 ALA 103 550 550 ALA ALA A . n A 1 104 PHE 104 551 551 PHE PHE A . n A 1 105 HIS 105 552 552 HIS HIS A . n A 1 106 PRO 106 553 553 PRO PRO A . n A 1 107 ARG 107 554 554 ARG ARG A . n A 1 108 GLU 108 555 555 GLU GLU A . n A 1 109 MET 109 556 556 MET MET A . n A 1 110 ASN 110 557 557 ASN ASN A . n A 1 111 ALA 111 558 558 ALA ALA A . n # _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center CESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'mPar3 PDZ2-1' 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 50 ? mM ? 1 'sodium azide-4' 0.02 ? % ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KOJ _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1307 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 219 _pdbx_nmr_constraints.NOE_long_range_total_count 491 _pdbx_nmr_constraints.NOE_medium_range_total_count 209 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 388 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 9 HZ3 A LYS 466 ? ? O A LYS 535 ? ? 1.59 2 9 O A SER 533 ? ? HG1 A THR 534 ? ? 1.59 3 11 HZ3 A LYS 506 ? ? OD2 A ASP 509 ? ? 1.59 4 14 HZ1 A LYS 466 ? ? O A LYS 535 ? ? 1.60 5 19 HZ3 A LYS 466 ? ? O A LYS 535 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 455 ? ? 174.98 164.54 2 1 VAL A 456 ? ? 69.22 163.02 3 1 ILE A 482 ? ? -139.98 -59.10 4 1 PRO A 487 ? ? -105.70 -166.34 5 1 ASN A 515 ? ? 59.34 12.11 6 1 THR A 534 ? ? 63.00 97.77 7 2 THR A 481 ? ? -68.30 91.11 8 2 ILE A 482 ? ? -140.93 -46.22 9 2 THR A 534 ? ? 62.60 116.33 10 2 ASN A 557 ? ? 69.78 -68.94 11 3 LYS A 455 ? ? -114.12 79.33 12 3 ASP A 479 ? ? 70.85 95.75 13 3 MET A 536 ? ? 177.55 149.59 14 3 GLU A 548 ? ? -106.64 77.10 15 3 ARG A 554 ? ? 68.54 170.16 16 4 SER A 485 ? ? 68.64 -175.01 17 4 ASN A 492 ? ? -174.60 149.46 18 4 THR A 534 ? ? 65.72 121.35 19 4 ASN A 557 ? ? 65.60 -79.86 20 5 ASP A 479 ? ? 77.17 110.22 21 5 SER A 485 ? ? 71.50 138.78 22 5 ASN A 492 ? ? -177.07 144.62 23 5 ASN A 515 ? ? 58.69 19.76 24 5 THR A 534 ? ? 69.36 109.34 25 5 MET A 536 ? ? -92.57 44.87 26 5 ARG A 554 ? ? 67.55 95.59 27 5 ASN A 557 ? ? 66.41 87.70 28 6 VAL A 480 ? ? 67.20 85.46 29 6 THR A 481 ? ? -175.08 -159.86 30 6 ALA A 486 ? ? 68.34 95.31 31 6 LEU A 519 ? ? -141.62 17.24 32 6 THR A 534 ? ? 63.77 109.96 33 6 ASN A 557 ? ? -165.51 94.92 34 7 THR A 481 ? ? -160.00 36.88 35 7 SER A 485 ? ? 68.19 84.00 36 7 ILE A 512 ? ? -107.77 -62.64 37 7 ASN A 515 ? ? 59.96 10.46 38 7 THR A 534 ? ? 57.50 89.90 39 7 GLU A 549 ? ? 69.41 131.69 40 8 VAL A 480 ? ? 62.81 71.72 41 8 ASN A 515 ? ? 57.75 13.04 42 8 THR A 534 ? ? 61.70 128.88 43 8 PRO A 553 ? ? -72.38 29.99 44 8 ARG A 554 ? ? 67.35 173.93 45 9 VAL A 480 ? ? 78.18 99.84 46 9 SER A 485 ? ? 70.14 -60.48 47 9 ALA A 486 ? ? 72.60 97.47 48 9 LEU A 519 ? ? -140.21 13.70 49 9 THR A 534 ? ? 67.93 179.42 50 9 PRO A 553 ? ? -68.13 0.14 51 9 ARG A 554 ? ? 75.33 128.11 52 9 MET A 556 ? ? 75.13 143.52 53 10 THR A 481 ? ? 65.98 88.53 54 10 LEU A 519 ? ? -140.96 12.95 55 10 THR A 534 ? ? 73.38 -45.71 56 10 LYS A 535 ? ? 62.04 103.78 57 10 GLU A 549 ? ? -66.50 86.83 58 10 ALA A 550 ? ? -151.11 47.17 59 10 ASN A 557 ? ? 78.28 82.54 60 11 VAL A 480 ? ? -100.62 -78.23 61 11 ILE A 482 ? ? 72.04 -66.67 62 11 ASN A 492 ? ? -172.89 143.41 63 11 THR A 534 ? ? 52.36 81.43 64 11 GLU A 549 ? ? 59.51 -89.48 65 11 ALA A 550 ? ? 63.83 -72.93 66 11 PRO A 553 ? ? -76.09 35.48 67 11 GLU A 555 ? ? 65.32 111.39 68 12 ILE A 482 ? ? -176.85 -43.28 69 12 THR A 534 ? ? 71.41 -22.15 70 12 LYS A 535 ? ? 55.16 103.96 71 12 MET A 536 ? ? -75.42 46.18 72 13 ASN A 452 ? ? 74.48 91.69 73 13 THR A 481 ? ? -178.30 -40.75 74 13 ILE A 482 ? ? -155.95 -33.94 75 13 ALA A 486 ? ? 62.24 89.54 76 13 ASN A 492 ? ? 177.01 148.08 77 13 ASN A 515 ? ? 59.79 5.76 78 13 THR A 534 ? ? 69.93 102.83 79 14 THR A 534 ? ? 37.54 100.84 80 14 MET A 536 ? ? -113.22 67.29 81 14 GLU A 548 ? ? 68.71 -176.50 82 14 ALA A 550 ? ? 65.67 -173.89 83 15 VAL A 450 ? ? -138.04 -45.63 84 15 VAL A 456 ? ? 67.91 173.71 85 15 ASP A 479 ? ? 74.62 138.27 86 15 ILE A 482 ? ? 66.85 97.56 87 15 SER A 485 ? ? -154.47 -36.43 88 15 ALA A 486 ? ? 72.89 106.96 89 15 ASN A 492 ? ? -172.27 149.68 90 15 THR A 534 ? ? 56.92 84.31 91 16 ILE A 482 ? ? 70.49 97.54 92 16 ILE A 512 ? ? -96.28 -61.37 93 16 ASN A 515 ? ? 58.88 12.02 94 16 THR A 534 ? ? 73.25 96.48 95 16 ARG A 554 ? ? -99.02 -68.53 96 16 GLU A 555 ? ? 66.74 99.37 97 16 ASN A 557 ? ? 171.82 166.65 98 17 LYS A 454 ? ? -99.42 -72.90 99 17 LYS A 455 ? ? 56.41 96.95 100 17 ASN A 515 ? ? 67.24 -61.57 101 17 THR A 534 ? ? 55.88 95.66 102 17 ASN A 557 ? ? -157.18 78.72 103 18 ASN A 492 ? ? -178.88 149.05 104 18 ILE A 512 ? ? -95.61 -61.26 105 18 THR A 534 ? ? 55.07 100.72 106 18 MET A 536 ? ? -106.64 54.54 107 18 GLU A 548 ? ? 46.20 -149.63 108 18 PRO A 553 ? ? -55.68 106.12 109 19 LYS A 454 ? ? 68.17 -171.94 110 19 LYS A 455 ? ? -83.71 39.72 111 19 VAL A 456 ? ? 71.74 95.95 112 19 ILE A 482 ? ? 63.74 102.23 113 19 SER A 485 ? ? 79.05 169.99 114 19 ASN A 492 ? ? -172.10 138.96 115 19 ASN A 515 ? ? 57.75 12.68 116 19 THR A 534 ? ? 69.23 128.91 117 19 ALA A 550 ? ? -128.18 -77.56 118 19 ASN A 557 ? ? 73.04 97.49 119 20 VAL A 456 ? ? -96.64 31.09 120 20 ASP A 479 ? ? 66.15 -8.75 121 20 VAL A 480 ? ? -56.15 102.21 122 20 ILE A 482 ? ? -144.09 -36.06 123 20 ALA A 486 ? ? 66.36 85.55 124 20 PRO A 487 ? ? -99.62 -156.83 125 20 THR A 534 ? ? 64.43 94.55 126 20 MET A 536 ? ? -99.77 32.89 127 20 GLU A 548 ? ? -90.89 -71.05 128 20 GLU A 549 ? ? 52.18 134.21 129 20 PRO A 553 ? ? -57.72 -78.55 #