HEADER SIGNALING PROTEIN 23-SEP-09 2KOJ TITLE SOLUTION STRUCTURE OF MOUSE PAR-3 PDZ2 (RESIDUES 450-558) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTITIONING DEFECTIVE 3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ 2 DOMAIN; COMPND 5 SYNONYM: PARD-3, PAR-3, ATYPICAL PKC ISOTYPE-SPECIFIC-INTERACTING COMPND 6 PROTEIN, ASIP, EPHRIN-INTERACTING PROTEIN, PHIP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PAR-3, PAR3, PARD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG130099[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE30-8HT KEYWDS PAR-3, PDZ DOMAIN, STRUCTURAL GENOMICS, ALTERNATIVE SPLICING, CELL KEYWDS 2 CYCLE, CELL DIVISION, CELL JUNCTION, COILED COIL, CYTOPLASM, KEYWDS 3 CYTOSKELETON, MEMBRANE, PHOSPHOPROTEIN, TIGHT JUNCTION, SIGNALING KEYWDS 4 PROTEIN, PSI-2, PROTEIN STRUCTURE INITIATIVE, CENTER FOR EUKARYOTIC KEYWDS 5 STRUCTURAL GENOMICS, CESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,R.C.TYLER,F.C.PETERSON,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 2 GENOMICS (CESG) REVDAT 2 16-MAR-22 2KOJ 1 REMARK SEQADV REVDAT 1 10-NOV-09 2KOJ 0 JRNL AUTH J.L.MARKLEY,A.BAHRAMI,H.R.EGHBALNIA,F.C.PETERSON,E.L.ULRICH, JRNL AUTH 2 W.M.WESTLER,B.F.VOLKMAN JRNL TITL MACROMOLECULAR STRUCTURE DETERMINATION BY NMR SEPECTROSCOPY JRNL REF STRUCTURAL BIOINFORMATICS, 93 2009 JRNL REF 2 2ND EDITION JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : BRUKER (TOPSPIN), REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 1307 REMARK 3 NOE CONSTRAINTS (219 INTRA, 388 SEQUENTIAL, 209 MEDIUM, AND 491 REMARK 3 LONG RANGE) AND 117 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2KOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 54 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MPAR3 PDZ2, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2007, XEASY 1.3, SPSCAN REMARK 210 1.1.0, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 455 164.54 174.98 REMARK 500 1 VAL A 456 163.02 69.22 REMARK 500 1 ILE A 482 -59.10 -139.98 REMARK 500 1 PRO A 487 -166.34 -105.70 REMARK 500 1 ASN A 515 12.11 59.34 REMARK 500 1 THR A 534 97.77 63.00 REMARK 500 2 THR A 481 91.11 -68.30 REMARK 500 2 ILE A 482 -46.22 -140.93 REMARK 500 2 THR A 534 116.33 62.60 REMARK 500 2 ASN A 557 -68.94 69.78 REMARK 500 3 LYS A 455 79.33 -114.12 REMARK 500 3 ASP A 479 95.75 70.85 REMARK 500 3 MET A 536 149.59 177.55 REMARK 500 3 GLU A 548 77.10 -106.64 REMARK 500 3 ARG A 554 170.16 68.54 REMARK 500 4 SER A 485 -175.01 68.64 REMARK 500 4 ASN A 492 149.46 -174.60 REMARK 500 4 THR A 534 121.35 65.72 REMARK 500 4 ASN A 557 -79.86 65.60 REMARK 500 5 ASP A 479 110.22 77.17 REMARK 500 5 SER A 485 138.78 71.50 REMARK 500 5 ASN A 492 144.62 -177.07 REMARK 500 5 ASN A 515 19.76 58.69 REMARK 500 5 THR A 534 109.34 69.36 REMARK 500 5 MET A 536 44.87 -92.57 REMARK 500 5 ARG A 554 95.59 67.55 REMARK 500 5 ASN A 557 87.70 66.41 REMARK 500 6 VAL A 480 85.46 67.20 REMARK 500 6 THR A 481 -159.86 -175.08 REMARK 500 6 ALA A 486 95.31 68.34 REMARK 500 6 LEU A 519 17.24 -141.62 REMARK 500 6 THR A 534 109.96 63.77 REMARK 500 6 ASN A 557 94.92 -165.51 REMARK 500 7 THR A 481 36.88 -160.00 REMARK 500 7 SER A 485 84.00 68.19 REMARK 500 7 ILE A 512 -62.64 -107.77 REMARK 500 7 ASN A 515 10.46 59.96 REMARK 500 7 THR A 534 89.90 57.50 REMARK 500 7 GLU A 549 131.69 69.41 REMARK 500 8 VAL A 480 71.72 62.81 REMARK 500 8 ASN A 515 13.04 57.75 REMARK 500 8 THR A 534 128.88 61.70 REMARK 500 8 PRO A 553 29.99 -72.38 REMARK 500 8 ARG A 554 173.93 67.35 REMARK 500 9 VAL A 480 99.84 78.18 REMARK 500 9 SER A 485 -60.48 70.14 REMARK 500 9 ALA A 486 97.47 72.60 REMARK 500 9 LEU A 519 13.70 -140.21 REMARK 500 9 THR A 534 179.42 67.93 REMARK 500 9 PRO A 553 0.14 -68.13 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KOJ A 450 558 UNP Q99NH2 PARD3_MOUSE 450 558 SEQADV 2KOJ GLY A 448 UNP Q99NH2 EXPRESSION TAG SEQADV 2KOJ SER A 449 UNP Q99NH2 EXPRESSION TAG SEQRES 1 A 111 GLY SER VAL TYR ASN THR LYS LYS VAL GLY LYS ARG LEU SEQRES 2 A 111 ASN ILE GLN LEU LYS LYS GLY THR GLU GLY LEU GLY PHE SEQRES 3 A 111 SER ILE THR SER ARG ASP VAL THR ILE GLY GLY SER ALA SEQRES 4 A 111 PRO ILE TYR VAL LYS ASN ILE LEU PRO ARG GLY ALA ALA SEQRES 5 A 111 ILE GLN ASP GLY ARG LEU LYS ALA GLY ASP ARG LEU ILE SEQRES 6 A 111 GLU VAL ASN GLY VAL ASP LEU ALA GLY LYS SER GLN GLU SEQRES 7 A 111 GLU VAL VAL SER LEU LEU ARG SER THR LYS MET GLU GLY SEQRES 8 A 111 THR VAL SER LEU LEU VAL PHE ARG GLN GLU GLU ALA PHE SEQRES 9 A 111 HIS PRO ARG GLU MET ASN ALA HELIX 1 1 GLY A 497 GLY A 503 1 7 HELIX 2 2 SER A 523 THR A 534 1 12 SHEET 1 A 5 LYS A 458 LYS A 465 0 SHEET 2 A 5 THR A 539 ARG A 546 -1 O VAL A 544 N LEU A 460 SHEET 3 A 5 ARG A 510 VAL A 514 -1 N GLU A 513 O LEU A 543 SHEET 4 A 5 ILE A 488 ILE A 493 -1 N ILE A 488 O LEU A 511 SHEET 5 A 5 PHE A 473 SER A 477 -1 N THR A 476 O TYR A 489 SHEET 1 B 4 LYS A 458 LYS A 465 0 SHEET 2 B 4 THR A 539 ARG A 546 -1 O VAL A 544 N LEU A 460 SHEET 3 B 4 ARG A 510 VAL A 514 -1 N GLU A 513 O LEU A 543 SHEET 4 B 4 VAL A 517 ASP A 518 -1 O VAL A 517 N VAL A 514 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1