HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-SEP-09 2KON TITLE NMR SOLUTION STRUCTURE OF CV_2116 FROM CHROMOBACTERIUM VIOLACEUM. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CVT4(1-82) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 GENE: CV_2116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P15TV LIC KEYWDS UNCHARACTERIZED PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,J.R.CORT,M.GARCIA,A.YEE,C.H.ARROWSMITH, AUTHOR 2 G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 14-JUN-23 2KON 1 REMARK REVDAT 3 26-FEB-20 2KON 1 REMARK SEQADV REVDAT 2 20-OCT-09 2KON 1 AUTHOR REVDAT 1 13-OCT-09 2KON 0 JRNL AUTH Y.YANG,T.A.RAMELOT,J.R.CORT,M.GARCIA,A.YEE,C.H.ARROWSMITH, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR SOLUTION STRUCTURE OF CV_2116 FROM CHROMOBACTERIUM JRNL TITL 2 VIOLACEUM.NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 CVT4(1-82) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH-2.20 WITH HBDB REMARK 4 REMARK 4 2KON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101380. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 CV_2116, 10 MM TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 10 UM ZINC REMARK 210 SULFATE, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 1X V/V INHIBITOR REMARK 210 COCKTAIL, 90% H2O/10% D2O; 0.8 REMARK 210 MM CV_2116, 10 MM TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 10 UM ZINC REMARK 210 SULFATE, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 1X V/V INHIBITOR REMARK 210 COCKTAIL, 90% H2O/10% D2O; 0.8 REMARK 210 MM [U-100% 13C; U-100% 15N] CV_ REMARK 210 2116, 10 MM TRIS, 300 MM SODIUM REMARK 210 CHLORIDE, 10 UM ZINC SULFATE, 10 REMARK 210 MM DTT, 1 MM BENZAMIDINE, 1X V/V REMARK 210 INHIBITOR COCKTAIL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 4D CC NOESY; REMARK 210 2D HIS-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.4, REMARK 210 AUTOASSIGN 2.30, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 26 111.55 -37.72 REMARK 500 1 VAL A 35 73.17 -150.54 REMARK 500 1 PRO A 46 86.33 -64.56 REMARK 500 1 GLN A 76 93.18 54.31 REMARK 500 1 LEU A 78 30.55 -91.18 REMARK 500 2 HIS A 15 155.82 -49.01 REMARK 500 2 VAL A 35 77.53 -152.48 REMARK 500 2 ASP A 37 -145.49 -86.70 REMARK 500 2 ARG A 38 -0.84 57.80 REMARK 500 2 THR A 39 132.30 74.18 REMARK 500 2 ASP A 50 -0.30 58.87 REMARK 500 2 ARG A 73 -80.90 -155.42 REMARK 500 2 HIS A 74 158.98 61.78 REMARK 500 2 ASP A 75 -85.43 -77.83 REMARK 500 2 LEU A 78 33.05 -85.26 REMARK 500 3 TYR A 6 -75.62 -86.72 REMARK 500 3 VAL A 35 54.69 -153.53 REMARK 500 3 ASP A 37 -135.28 -67.89 REMARK 500 3 ARG A 38 176.33 52.64 REMARK 500 3 ARG A 73 68.00 67.74 REMARK 500 3 ASP A 75 178.09 51.81 REMARK 500 3 GLN A 76 -100.13 -48.16 REMARK 500 3 LEU A 78 22.99 41.68 REMARK 500 4 VAL A 35 65.06 -152.46 REMARK 500 4 ASP A 37 -125.54 -65.01 REMARK 500 4 THR A 39 130.59 60.72 REMARK 500 4 PHE A 48 119.95 58.39 REMARK 500 4 ASP A 72 -67.30 -90.60 REMARK 500 4 ARG A 73 -141.31 -58.76 REMARK 500 5 ASN A 2 -72.19 -90.05 REMARK 500 5 PRO A 36 -168.24 -48.96 REMARK 500 5 THR A 39 108.76 -45.69 REMARK 500 5 PRO A 46 81.42 -45.38 REMARK 500 5 GLU A 47 133.80 178.08 REMARK 500 5 TYR A 49 -35.24 -145.15 REMARK 500 5 ASP A 50 -18.12 79.84 REMARK 500 5 HIS A 74 75.70 56.50 REMARK 500 5 GLN A 76 -24.20 82.76 REMARK 500 5 LEU A 78 -9.62 63.04 REMARK 500 6 ARG A 38 -165.24 -168.63 REMARK 500 6 PRO A 46 83.09 -45.53 REMARK 500 6 GLU A 47 132.24 -171.91 REMARK 500 6 ASP A 50 -3.80 62.97 REMARK 500 6 ASP A 72 -70.08 -82.39 REMARK 500 6 GLN A 76 11.57 -68.92 REMARK 500 7 ASN A 2 -168.59 42.96 REMARK 500 7 ARG A 7 29.52 49.41 REMARK 500 7 PRO A 26 109.99 -39.94 REMARK 500 7 VAL A 35 58.51 -152.86 REMARK 500 7 THR A 39 81.11 42.31 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16521 RELATED DB: BMRB REMARK 900 RELATED ID: CVT4 RELATED DB: TARGETDB DBREF 2KON A 1 82 UNP Q7NW74 Q7NW74_CHRVO 1 82 SEQADV 2KON THR A 43 UNP Q7NW74 ALA 43 CONFLICT SEQRES 1 A 82 MET ASN VAL ALA HIS TYR ARG GLY TYR GLU ILE GLU PRO SEQRES 2 A 82 GLY HIS GLN TYR ARG ASP ASP ILE ARG LYS TYR VAL PRO SEQRES 3 A 82 TYR ALA LEU ILE ARG LYS VAL GLY VAL PRO ASP ARG THR SEQRES 4 A 82 PRO ILE PRO THR THR TYR PRO GLU PHE TYR ASP LEU GLU SEQRES 5 A 82 ALA ASP ALA GLU ARG VAL SER ILE ALA CYS ALA LYS ILE SEQRES 6 A 82 ILE ILE ASP SER HIS LEU ASP ARG HIS ASP GLN GLY LEU SEQRES 7 A 82 ALA ASP LEU GLY HELIX 1 1 LEU A 51 ARG A 73 1 23 SHEET 1 A 3 ALA A 4 TYR A 6 0 SHEET 2 A 3 TYR A 9 GLU A 12 -1 O TYR A 9 N TYR A 6 SHEET 3 A 3 LEU A 29 LYS A 32 -1 O ARG A 31 N GLU A 10 SHEET 1 B 2 HIS A 15 ARG A 18 0 SHEET 2 B 2 LYS A 23 PRO A 26 -1 O VAL A 25 N GLN A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1