HEADER SIGNALING PROTEIN 30-SEP-09 2KOT TITLE SOLUTION STRUCTURE OF S100A13 WITH A DRUG AMLEXANOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-A13; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN A13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: S100A13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T KEYWDS S100A13, SIGNALING PROTEIN, CALCIUM, PHOSPHOPROTEIN EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR S.G.RANI,S.K.MOHAN,C.YU REVDAT 2 01-MAY-24 2KOT 1 REMARK REVDAT 1 09-MAR-10 2KOT 0 JRNL AUTH S.G.RANI,S.K.MOHAN,C.YU JRNL TITL MOLECULAR LEVEL INTERACTIONS OF S100A13 WITH AMLEXANOX: JRNL TITL 2 INHIBITOR FOR THE FORMATION OF MULTI-PROTEIN COMPLEX IN JRNL TITL 3 NON-CLASSICAL PATHWAY OF THE ACIDIC FIBROBLAST GROWTH FACTOR JRNL REF BIOCHEMISTRY 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20178375 JRNL DOI 10.1021/BI9019077 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE, NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA/CNS REMARK 4 REMARK 4 2KOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101386. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN S100-A13, 1.2MM REMARK 210 AMLEXANOX-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 13C-FILTER NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2, SPARKY, VNMRJ, TALOS, REMARK 210 HADDOCK 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING,DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 -76.20 -130.11 REMARK 500 1 ARG A 29 136.98 64.94 REMARK 500 1 GLN A 44 -56.68 -138.22 REMARK 500 1 GLN A 67 84.06 58.77 REMARK 500 1 ASP A 68 -70.63 -117.09 REMARK 500 1 SER A 69 -55.60 -164.43 REMARK 500 1 LEU A 93 -48.40 -171.04 REMARK 500 1 ARG A 96 40.38 -142.74 REMARK 500 1 LYS A 97 69.27 -152.74 REMARK 500 1 LEU B 6 -128.46 -136.26 REMARK 500 1 ARG B 29 114.86 61.45 REMARK 500 1 GLN B 44 -52.79 -154.65 REMARK 500 1 GLN B 67 72.22 67.24 REMARK 500 1 ASP B 68 15.09 -140.05 REMARK 500 1 GLU B 86 38.84 -92.85 REMARK 500 1 LEU B 93 -49.72 -167.55 REMARK 500 1 LYS B 97 108.62 -162.85 REMARK 500 2 LEU A 6 -62.00 -135.61 REMARK 500 2 ARG A 29 120.40 64.76 REMARK 500 2 ASP A 31 54.73 -98.03 REMARK 500 2 GLN A 44 -63.37 -153.12 REMARK 500 2 LEU A 46 47.47 -140.60 REMARK 500 2 SER A 69 -66.71 70.34 REMARK 500 2 GLU A 86 33.99 -88.34 REMARK 500 2 LEU B 6 -153.22 -113.51 REMARK 500 2 VAL B 17 35.43 -99.92 REMARK 500 2 THR B 18 -47.88 -147.14 REMARK 500 2 ARG B 29 141.34 65.69 REMARK 500 2 ASP B 31 57.69 -92.87 REMARK 500 2 THR B 43 39.55 -98.83 REMARK 500 2 GLN B 44 -55.11 -163.66 REMARK 500 2 SER B 55 43.97 -104.91 REMARK 500 2 GLN B 67 77.65 62.29 REMARK 500 2 ASP B 68 -70.62 -129.06 REMARK 500 2 SER B 69 -50.53 -177.43 REMARK 500 2 ARG B 96 42.48 -148.51 REMARK 500 2 LYS B 97 115.29 -177.04 REMARK 500 3 LEU A 6 -58.03 -133.57 REMARK 500 3 VAL A 17 -72.26 -82.54 REMARK 500 3 ARG A 29 169.99 58.82 REMARK 500 3 GLN A 44 -60.95 -151.36 REMARK 500 3 LEU A 46 47.83 -142.22 REMARK 500 3 GLN A 67 89.41 64.78 REMARK 500 3 ASP A 68 -70.13 -141.16 REMARK 500 3 SER A 69 -58.78 -174.17 REMARK 500 3 ARG A 96 37.66 -144.75 REMARK 500 3 LYS A 97 70.67 -163.31 REMARK 500 3 LEU B 6 -59.24 -123.18 REMARK 500 3 ARG B 29 171.55 59.46 REMARK 500 3 GLN B 44 -58.98 -123.41 REMARK 500 REMARK 500 THIS ENTRY HAS 343 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANW A 99 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANW B 99 DBREF 2KOT A 1 98 UNP Q99584 S10AD_HUMAN 1 98 DBREF 2KOT B 1 98 UNP Q99584 S10AD_HUMAN 1 98 SEQRES 1 A 98 MET ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE SEQRES 2 A 98 GLU THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN SEQRES 3 A 98 GLU GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS SEQRES 4 A 98 GLU LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP SEQRES 5 A 98 VAL GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL SEQRES 6 A 98 ASN GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG SEQRES 7 A 98 LEU ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS SEQRES 8 A 98 ASP LEU LYS ILE ARG LYS LYS SEQRES 1 B 98 MET ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE SEQRES 2 B 98 GLU THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN SEQRES 3 B 98 GLU GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS SEQRES 4 B 98 GLU LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP SEQRES 5 B 98 VAL GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL SEQRES 6 B 98 ASN GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG SEQRES 7 B 98 LEU ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS SEQRES 8 B 98 ASP LEU LYS ILE ARG LYS LYS HET ANW A 99 35 HET ANW B 99 35 HETNAM ANW 2-AMINO-7-(1-METHYLETHYL)-5-OXO-5H-CHROMENO[2,3- HETNAM 2 ANW B]PYRIDINE-3-CARBOXYLIC ACID FORMUL 3 ANW 2(C16 H14 N2 O4) HELIX 1 1 THR A 7 ARG A 25 1 19 HELIX 2 2 ASN A 36 THR A 43 1 8 HELIX 3 3 LEU A 56 ASP A 64 1 9 HELIX 4 4 LYS A 72 LYS A 90 1 19 HELIX 5 5 THR B 7 ARG B 25 1 19 HELIX 6 6 ASN B 36 THR B 43 1 8 HELIX 7 7 LEU B 56 ASP B 64 1 9 HELIX 8 8 LYS B 72 GLU B 86 1 15 SITE 1 AC1 3 MET A 1 PHE A 21 ARG A 25 SITE 1 AC2 5 MET B 1 PHE B 21 THR B 22 LYS B 30 SITE 2 AC2 5 ASP B 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL CONECT 3282 3293 3294 CONECT 3283 3294 3304 3305 CONECT 3284 3285 3306 3307 3308 CONECT 3285 3284 3286 3287 3309 CONECT 3286 3285 3310 3311 3312 CONECT 3287 3285 3288 3292 CONECT 3288 3287 3289 3313 CONECT 3289 3288 3290 3298 CONECT 3290 3289 3291 3300 CONECT 3291 3290 3292 3314 CONECT 3292 3287 3291 3315 CONECT 3293 3282 3297 3300 CONECT 3294 3282 3283 3295 CONECT 3295 3294 3296 3299 CONECT 3296 3295 3297 3316 CONECT 3297 3293 3296 3298 CONECT 3298 3289 3297 3301 CONECT 3299 3295 3302 3303 CONECT 3300 3290 3293 CONECT 3301 3298 CONECT 3302 3299 CONECT 3303 3299 CONECT 3304 3283 CONECT 3305 3283 CONECT 3306 3284 CONECT 3307 3284 CONECT 3308 3284 CONECT 3309 3285 CONECT 3310 3286 CONECT 3311 3286 CONECT 3312 3286 CONECT 3313 3288 CONECT 3314 3291 CONECT 3315 3292 CONECT 3316 3296 CONECT 3317 3328 3329 CONECT 3318 3329 3339 3340 CONECT 3319 3320 3341 3342 3343 CONECT 3320 3319 3321 3322 3344 CONECT 3321 3320 3345 3346 3347 CONECT 3322 3320 3323 3327 CONECT 3323 3322 3324 3348 CONECT 3324 3323 3325 3333 CONECT 3325 3324 3326 3335 CONECT 3326 3325 3327 3349 CONECT 3327 3322 3326 3350 CONECT 3328 3317 3332 3335 CONECT 3329 3317 3318 3330 CONECT 3330 3329 3331 3334 CONECT 3331 3330 3332 3351 CONECT 3332 3328 3331 3333 CONECT 3333 3324 3332 3336 CONECT 3334 3330 3337 3338 CONECT 3335 3325 3328 CONECT 3336 3333 CONECT 3337 3334 CONECT 3338 3334 CONECT 3339 3318 CONECT 3340 3318 CONECT 3341 3319 CONECT 3342 3319 CONECT 3343 3319 CONECT 3344 3320 CONECT 3345 3321 CONECT 3346 3321 CONECT 3347 3321 CONECT 3348 3323 CONECT 3349 3326 CONECT 3350 3327 CONECT 3351 3331 MASTER 163 0 2 8 0 0 3 6 1657 2 70 16 END