HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-OCT-09 2KPP TITLE SOLUTION NMR STRUCTURE OF LIN0431 PROTEIN FROM LISTERIA INNOCUA. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LKR112 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN0431 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 36-140; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA; SOURCE 3 ORGANISM_TAXID: 1642; SOURCE 4 GENE: LIN0431; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: LKR112-36-140-21.21 KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,R.XIAO,C.CICCOSANTI,H.JANJUA,D.Y.LEE,J.K.EVERETT,G.V.T.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 14-JUN-23 2KPP 1 REMARK REVDAT 4 26-FEB-20 2KPP 1 REMARK SEQADV REVDAT 3 21-JUL-10 2KPP 1 JRNL REVDAT 2 19-MAY-10 2KPP 1 JRNL REVDAT 1 23-FEB-10 2KPP 0 JRNL AUTH Y.TANG,R.XIAO,C.CICCOSANTI,H.JANJUA,D.Y.LEE,J.K.EVERETT, JRNL AUTH 2 G.V.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF LIN0431 PROTEIN FROM LISTERIA JRNL TITL 2 INNOCUA REVEALS HIGH STRUCTURAL SIMILARITY WITH DOMAIN II OF JRNL TITL 3 BACTERIAL TRANSCRIPTION ANTITERMINATION PROTEIN NUSG. JRNL REF PROTEINS V. 78 2563 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20602357 JRNL DOI 10.1002/PROT.22760 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101418. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.851 MM [U-100% 13C; U-100% REMARK 210 15N] LKR112, 20 MM MES, 200 MM REMARK 210 NACL, 5 MM CACL2, 10 MM DTT, REMARK 210 0.02 % NAN3, 50 UM DSS, 95% H2O/ REMARK 210 5% D2O; 0.887 MM [U-5% 13C; U- REMARK 210 100% 15N] LKR112, 20 MM MES, 200 REMARK 210 MM NACL, 5 MM CACL2, 10 MM DTT, REMARK 210 0.02 % NAN3, 50 UM DSS, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D HIGH RESOLUTION 1H-13C HSQC; REMARK 210 2D AROMATIC 1H-13C HSQC; 3D HNCO; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(COCA)CB; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D 1H- REMARK 210 13C ALIPHATIC NOESY; 3D 1H-13C REMARK 210 AROMATIC NOESY; 3D SIMUTAEOUS REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.2.1, CYANA 3.0, REMARK 210 NMRPIPE 2.3, PSVS, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 7 99.35 -64.03 REMARK 500 1 ASN A 15 -12.76 66.28 REMARK 500 1 LEU A 24 -62.43 -94.91 REMARK 500 1 LYS A 38 -169.86 -114.25 REMARK 500 1 ALA A 40 -2.82 67.00 REMARK 500 1 GLU A 56 138.65 -175.47 REMARK 500 1 SER A 71 9.83 -157.49 REMARK 500 1 ALA A 73 107.54 -58.31 REMARK 500 1 ASP A 94 83.71 -69.98 REMARK 500 1 HIS A 110 18.12 174.21 REMARK 500 1 HIS A 112 -33.06 176.16 REMARK 500 2 LYS A 2 71.02 64.34 REMARK 500 2 SER A 71 9.64 -164.15 REMARK 500 2 LYS A 96 -179.97 -173.95 REMARK 500 2 ASN A 106 64.19 63.63 REMARK 500 2 HIS A 110 -85.52 -130.20 REMARK 500 2 HIS A 111 80.96 59.54 REMARK 500 3 ASP A 6 44.05 -106.43 REMARK 500 3 ASN A 58 45.16 -97.19 REMARK 500 3 SER A 71 17.64 -141.81 REMARK 500 3 PRO A 98 27.29 -71.94 REMARK 500 4 LYS A 2 84.53 -159.23 REMARK 500 4 ASN A 15 19.21 57.45 REMARK 500 4 GLN A 62 19.53 56.59 REMARK 500 4 SER A 71 13.57 -162.00 REMARK 500 5 ARG A 20 142.24 -173.76 REMARK 500 5 GLU A 50 18.33 57.76 REMARK 500 5 SER A 71 25.44 -161.65 REMARK 500 5 GLN A 92 -178.46 -69.77 REMARK 500 5 SER A 95 81.24 -62.72 REMARK 500 5 PRO A 98 -70.04 -75.77 REMARK 500 5 ASP A 99 16.92 55.12 REMARK 500 5 ASP A 101 87.89 -62.60 REMARK 500 6 SER A 71 18.83 -169.19 REMARK 500 6 ALA A 73 93.43 -63.61 REMARK 500 6 HIS A 109 27.49 -79.08 REMARK 500 7 ASP A 6 96.29 -68.64 REMARK 500 7 ASN A 15 15.58 57.50 REMARK 500 7 LYS A 38 99.42 -66.85 REMARK 500 7 ASN A 58 75.58 -115.15 REMARK 500 7 SER A 71 12.18 -167.27 REMARK 500 7 CYS A 79 73.32 -118.99 REMARK 500 7 LYS A 96 35.99 -90.00 REMARK 500 7 PRO A 105 39.23 -87.21 REMARK 500 8 LEU A 24 -65.50 -97.64 REMARK 500 8 ALA A 40 -41.37 72.96 REMARK 500 8 GLN A 41 108.23 -50.85 REMARK 500 8 ASN A 58 63.66 -111.19 REMARK 500 8 SER A 71 6.79 -156.31 REMARK 500 8 PRO A 81 0.10 -69.25 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16563 RELATED DB: BMRB REMARK 900 RELATED ID: LKR112 RELATED DB: TARGETDB DBREF 2KPP A 2 106 UNP Q92EM7 Q92EM7_LISIN 36 140 SEQADV 2KPP MET A 1 UNP Q92EM7 INITIATING METHIONINE SEQADV 2KPP LEU A 107 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP GLU A 108 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 109 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 110 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 111 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 112 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 113 UNP Q92EM7 EXPRESSION TAG SEQADV 2KPP HIS A 114 UNP Q92EM7 EXPRESSION TAG SEQRES 1 A 114 MET LYS ASN THR GLY ASP GLU VAL VAL ALA ILE ILE SER SEQRES 2 A 114 GLN ASN GLY LYS VAL ILE ARG GLU ILE PRO LEU THR GLY SEQRES 3 A 114 HIS LYS GLY ASN GLU GLN PHE THR ILE LYS GLY LYS GLY SEQRES 4 A 114 ALA GLN TYR ASN LEU MET GLU VAL ASP GLY GLU ARG ILE SEQRES 5 A 114 ARG ILE LYS GLU ASP ASN SER PRO ASP GLN VAL GLY VAL SEQRES 6 A 114 LYS MET GLY TRP LYS SER LYS ALA GLY ASP THR ILE VAL SEQRES 7 A 114 CYS LEU PRO HIS LYS VAL PHE VAL GLU ILE LYS SER THR SEQRES 8 A 114 GLN LYS ASP SER LYS ASP PRO ASP THR ASP LEU ILE VAL SEQRES 9 A 114 PRO ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLN A 62 GLY A 68 1 7 HELIX 2 2 LEU A 80 HIS A 82 5 3 SHEET 1 A 4 LYS A 17 PRO A 23 0 SHEET 2 A 4 VAL A 8 GLN A 14 -1 N ALA A 10 O ILE A 22 SHEET 3 A 4 VAL A 84 SER A 90 -1 O GLU A 87 N ILE A 11 SHEET 4 A 4 THR A 76 CYS A 79 -1 N CYS A 79 O VAL A 84 SHEET 1 B 3 ASN A 30 LYS A 38 0 SHEET 2 B 3 GLN A 41 ASP A 48 -1 O ASN A 43 N ILE A 35 SHEET 3 B 3 ILE A 52 ASP A 57 -1 O GLU A 56 N LEU A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1