HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-OCT-09 2KPS OBSLTE 06-OCT-10 2KPS 2L3U TITLE SOLUTION STRUCTURE OF DOMAIN IV FROM THE YBBR FAMILY PROTEIN OF TITLE 2 DESULFITOBACTERIUM HAFNIENSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 321-409; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE Y51; SOURCE 3 ORGANISM_TAXID: 138119; SOURCE 4 STRAIN: Y51; SOURCE 5 GENE: DSY4488; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21 KEYWDS BETA STRAND, FIGURE EIGHT, FIGURE 8, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.W.BARB,H.LEE,R.L.BELOTE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 2 06-OCT-10 2KPS 1 OBSLTE REVDAT 1 17-NOV-09 2KPS 0 JRNL AUTH A.W.BARB,H.LEE,R.BELOTE,C.CICCOSANTI,K.HAMILTON,T.ACTON, JRNL AUTH 2 R.XIAO,J.EVERETT,G.T.MONTELIONE,J.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF DOMAIN IV FROM THE YBBR FAMILY PROTEIN JRNL TITL 2 OF DESULFITOBACTERIUM HAFNIENSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT COMPLETED USING XPLOR-NIH REMARK 3 AND 3 RDC DATASETS, NOE LIST, AND DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 2KPS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 DHR29A, 200 MM SODIUM CHLORIDE, REMARK 210 10 % D2O, 90% H2O/10% D2O; 1 MM REMARK 210 [U-13C] DHR29A, 10 % D2O, 200 MM REMARK 210 SODIUM CHLORIDE, 1 MG PF1 PHAGE, REMARK 210 90% H2O/10% D2O; 1 MM DHR29A, 200 REMARK 210 MM SODIUM CHLORIDE, 10 % D2O, 7 % REMARK 210 ACRYLAMIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, NMRVIEW, CYANA, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 7 PRO A 25 N PRO A 25 CA 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -22.52 -170.91 REMARK 500 1 TYR A 5 35.20 -82.45 REMARK 500 1 ASN A 13 -19.86 55.90 REMARK 500 1 LEU A 14 121.76 -38.53 REMARK 500 1 PRO A 15 150.42 -47.48 REMARK 500 1 GLU A 21 26.67 -65.43 REMARK 500 1 LYS A 22 158.25 110.96 REMARK 500 1 PRO A 23 9.82 -63.47 REMARK 500 1 LEU A 24 83.40 29.42 REMARK 500 1 GLU A 26 104.19 -12.58 REMARK 500 1 PRO A 35 -18.82 -45.26 REMARK 500 1 ALA A 52 44.65 -95.48 REMARK 500 1 TYR A 65 48.95 -99.79 REMARK 500 1 GLU A 88 48.33 -83.66 REMARK 500 1 PRO A 90 9.03 -62.15 REMARK 500 1 LEU A 91 18.67 57.23 REMARK 500 1 HIS A 93 -61.88 -156.42 REMARK 500 1 HIS A 95 88.01 51.26 REMARK 500 1 HIS A 96 -29.38 -167.31 REMARK 500 2 THR A 3 -170.88 50.25 REMARK 500 2 TYR A 5 7.65 -167.62 REMARK 500 2 ARG A 12 -41.42 -165.74 REMARK 500 2 ASN A 13 13.06 -53.88 REMARK 500 2 GLU A 21 35.43 -69.68 REMARK 500 2 LYS A 22 148.89 98.28 REMARK 500 2 PRO A 23 9.81 -59.94 REMARK 500 2 LEU A 24 65.07 30.37 REMARK 500 2 GLU A 26 42.83 -51.68 REMARK 500 2 GLU A 88 -94.82 -82.13 REMARK 500 2 LEU A 91 -66.24 -102.91 REMARK 500 2 GLU A 92 -57.09 -168.22 REMARK 500 2 HIS A 94 -119.09 -167.14 REMARK 500 2 HIS A 96 87.10 52.03 REMARK 500 3 LYS A 2 -60.64 -166.69 REMARK 500 3 LEU A 7 74.25 -161.06 REMARK 500 3 ASN A 13 24.89 -59.87 REMARK 500 3 LYS A 22 -43.57 167.80 REMARK 500 3 LEU A 24 -44.16 158.23 REMARK 500 3 GLU A 26 47.27 -56.04 REMARK 500 3 ILE A 64 -132.35 -88.03 REMARK 500 3 TYR A 65 -165.49 -161.80 REMARK 500 3 GLN A 67 91.56 -160.78 REMARK 500 3 GLU A 88 -23.45 -166.48 REMARK 500 3 LEU A 91 -27.18 -164.68 REMARK 500 3 GLU A 92 -44.41 -169.43 REMARK 500 3 HIS A 93 -144.52 -66.59 REMARK 500 3 HIS A 94 28.42 -152.02 REMARK 500 3 HIS A 95 90.75 -61.44 REMARK 500 4 THR A 3 92.45 50.49 REMARK 500 4 LEU A 4 32.73 -159.90 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: DHR29A RELATED DB: TARGETDB REMARK 900 RELATED ID: 2KPU RELATED DB: PDB DBREF 2KPS A 2 90 UNP Q24NW5 Q24NW5_DESHY 321 409 SEQADV 2KPS MET A 1 UNP Q24NW5 INITIATING METHIONINE SEQADV 2KPS LEU A 91 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS GLU A 92 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 93 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 94 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 95 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 96 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 97 UNP Q24NW5 EXPRESSION TAG SEQADV 2KPS HIS A 98 UNP Q24NW5 EXPRESSION TAG SEQRES 1 A 98 MET LYS THR LEU TYR ASP LEU PRO ILE VAL LEU ARG ASN SEQRES 2 A 98 LEU PRO GLU ASP LEU VAL LEU GLU LYS PRO LEU PRO GLU SEQRES 3 A 98 VAL SER VAL THR ILE ARG ALA TYR PRO GLU ILE LEU ASN SEQRES 4 A 98 ASN LEU THR LYS GLU GLN ILE SER LEU TRP ILE ASP ALA SEQRES 5 A 98 THR GLY LYS ALA VAL GLY GLU HIS THR VAL LYS ILE TYR SEQRES 6 A 98 TRP GLN LEU PRO ALA GLY ILE GLU MET VAL SER ILE PRO SEQRES 7 A 98 ASP VAL THR TYR THR LEU LYS ALA LYS GLU ASP PRO LEU SEQRES 8 A 98 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 3 LEU A 7 5 5 HELIX 2 2 TYR A 34 ASN A 40 1 7 SHEET 1 A 2 VAL A 10 LEU A 11 0 SHEET 2 A 2 TRP A 49 ILE A 50 1 O ILE A 50 N VAL A 10 SHEET 1 B 2 LEU A 18 LEU A 20 0 SHEET 2 B 2 LEU A 84 ALA A 86 -1 O LYS A 85 N VAL A 19 SHEET 1 C 2 HIS A 60 LYS A 63 0 SHEET 2 C 2 ASP A 79 TYR A 82 -1 O VAL A 80 N VAL A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1