data_2KPU # _entry.id 2KPU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KPU pdb_00002kpu 10.2210/pdb2kpu/pdb RCSB RCSB101423 ? ? WWPDB D_1000101423 ? ? BMRB 16570 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2KPS PDB . unspecified DhR29B TargetDB . unspecified 16570 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KPU _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-20 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cort, J.R.' 1 'Ramelot, T.A.' 2 'Yang, Y.' 3 'Belote, R.L.' 4 'Ciccosanti, C.' 5 'Haleema, J.' 6 'Acton, T.B.' 7 'Xiao, R.' 8 'Everett, J.K.' 9 'Montelione, G.T.' 10 'Kennedy, M.A.' 11 'Northeast Structural Genomics Consortium (NESG)' 12 # _citation.id primary _citation.title 'Structures of domains I and IV from YbbR are representative of a widely distributed protein family.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 20 _citation.page_first 396 _citation.page_last 405 _citation.year 2011 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21154411 _citation.pdbx_database_id_DOI 10.1002/pro.571 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barb, A.W.' 1 ? primary 'Cort, J.R.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Lew, S.' 4 ? primary 'Lee, H.W.' 5 ? primary 'Acton, T.' 6 ? primary 'Xiao, R.' 7 ? primary 'Kennedy, M.A.' 8 ? primary 'Tong, L.' 9 ? primary 'Montelione, G.T.' 10 ? primary 'Prestegard, J.H.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'YbbR family protein' _entity.formula_weight 10791.182 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sequence database residues 32-118' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSQTLDRDPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEI SPRVVTLQLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;SSQTLDRDPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEI SPRVVTLQLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier DhR29B # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 GLN n 1 4 THR n 1 5 LEU n 1 6 ASP n 1 7 ARG n 1 8 ASP n 1 9 PRO n 1 10 THR n 1 11 LEU n 1 12 THR n 1 13 LEU n 1 14 SER n 1 15 LEU n 1 16 ILE n 1 17 ALA n 1 18 LYS n 1 19 ASN n 1 20 THR n 1 21 PRO n 1 22 ALA n 1 23 ASN n 1 24 SER n 1 25 MET n 1 26 ILE n 1 27 MET n 1 28 THR n 1 29 LYS n 1 30 LEU n 1 31 PRO n 1 32 SER n 1 33 VAL n 1 34 ARG n 1 35 VAL n 1 36 LYS n 1 37 THR n 1 38 GLU n 1 39 GLY n 1 40 TYR n 1 41 ASN n 1 42 PRO n 1 43 SER n 1 44 ILE n 1 45 ASN n 1 46 VAL n 1 47 ASN n 1 48 GLU n 1 49 LEU n 1 50 PHE n 1 51 ALA n 1 52 TYR n 1 53 VAL n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 GLY n 1 58 SER n 1 59 GLU n 1 60 PRO n 1 61 GLY n 1 62 GLU n 1 63 HIS n 1 64 ASP n 1 65 TYR n 1 66 GLU n 1 67 VAL n 1 68 LYS n 1 69 VAL n 1 70 GLU n 1 71 PRO n 1 72 ILE n 1 73 PRO n 1 74 ASN n 1 75 ILE n 1 76 LYS n 1 77 ILE n 1 78 VAL n 1 79 GLU n 1 80 ILE n 1 81 SER n 1 82 PRO n 1 83 ARG n 1 84 VAL n 1 85 VAL n 1 86 THR n 1 87 LEU n 1 88 GLN n 1 89 LEU n 1 90 GLU n 1 91 HIS n 1 92 HIS n 1 93 HIS n 1 94 HIS n 1 95 HIS n 1 96 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Dhaf_0833, Dhaf_0833 (32-118)' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DCB-2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfitobacterium hafniense' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272564 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET21-23C _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8FX10_DESHD _struct_ref.pdbx_db_accession B8FX10 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQTLDRDPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEIS PRVVTLQ ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KPU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B8FX10 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KPU SER A 1 ? UNP B8FX10 ? ? 'expression tag' 1 1 1 2KPU LEU A 89 ? UNP B8FX10 ? ? 'expression tag' 89 2 1 2KPU GLU A 90 ? UNP B8FX10 ? ? 'expression tag' 90 3 1 2KPU HIS A 91 ? UNP B8FX10 ? ? 'expression tag' 91 4 1 2KPU HIS A 92 ? UNP B8FX10 ? ? 'expression tag' 92 5 1 2KPU HIS A 93 ? UNP B8FX10 ? ? 'expression tag' 93 6 1 2KPU HIS A 94 ? UNP B8FX10 ? ? 'expression tag' 94 7 1 2KPU HIS A 95 ? UNP B8FX10 ? ? 'expression tag' 95 8 1 2KPU HIS A 96 ? UNP B8FX10 ? ? 'expression tag' 96 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 3 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D C(CO)NH' 1 5 1 '3D HNCO' 1 6 1 '3D HNCACB' 1 7 1 '3D HBHA(CO)NH' 1 8 1 '3D HCCH-TOCSY' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '3D 1H-13C NOESY' 1 11 2 '4D 1H-13C-13C-1H HMQC-NOESY-HMQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.23 _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.8 mM [U-100% 13C; U-100% 15N] Dhaf_0833 (32-118), 20 mM ammonium acetate, 200 mM sodium chloride-3, 10 mM calcium chloride-4, 0.02 % sodium azide-5, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;0.8 mM [U-100% 13C; U-100% 15N] Dhaf_0833 (32-118), 20 mM ammonium acetate, 200 mM sodium chloride, 10 mM calcium chloride, 0.02 % sodium azide, 100% D2O ; 2 '100% D2O' ;0.8 mM [5% 13C from 5% U-13C glucose in growth medium; U-100% 15N] Dhaf_0833 (32-118), 20 mM ammonium acetate, 200 mM sodium chloride, 10 mM calcium chloride, 0.02 % sodium azide, 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 750 Varian INOVA 2 'Varian INOVA' 850 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KPU _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'low energy, few restraint violations, favorable geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KPU _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KPU _pdbx_nmr_representative.selection_criteria 'no criteria' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Huang, Tejero, Powers and Montelione' 'structure solution' AutoStructure ? 1 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 2 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 4 'Bhattacharya and Montelione' refinement PSVS ? 5 'Accelrys Software Inc.' processing Felix ? 6 Goddard 'data analysis' Sparky ? 7 Goddard 'peak picking' Sparky ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'structure of fragment 32-118 of the full length protein (437 residues)' _exptl.entry_id 2KPU _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KPU _struct.title ;NMR Structure of YbbR family protein Dhaf_0833 (residues 32-118) from Desulfitobacterium hafniense DCB-2: Northeast Structural Genomics Consortium target DhR29B ; _struct.pdbx_model_details 'no criteria, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KPU _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 1 -1.60 2 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 2 -0.20 3 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 3 -2.85 4 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 4 -0.32 5 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 5 -0.53 6 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 6 -5.01 7 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 7 0.77 8 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 8 -1.90 9 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 9 0.46 10 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 10 -5.15 11 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 11 -0.72 12 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 12 -1.79 13 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 13 0.95 14 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 14 -0.67 15 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 15 -2.98 16 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 16 -3.29 17 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 17 -2.73 18 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 18 -3.80 19 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 19 -2.83 20 SER 81 A . ? SER 81 A PRO 82 A ? PRO 82 A 20 0.85 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 68 ? VAL A 69 ? LYS A 68 VAL A 69 A 2 ALA A 51 ? ASP A 54 ? ALA A 51 ASP A 54 A 3 THR A 10 ? LYS A 18 ? THR A 10 LYS A 18 A 4 SER A 32 ? GLU A 38 ? SER A 32 GLU A 38 A 5 LYS A 76 ? ILE A 77 ? LYS A 76 ILE A 77 B 1 SER A 24 ? ILE A 26 ? SER A 24 ILE A 26 B 2 VAL A 84 ? HIS A 91 ? VAL A 84 HIS A 91 B 3 GLY A 61 ? GLU A 66 ? GLY A 61 GLU A 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 68 ? O LYS A 68 N TYR A 52 ? N TYR A 52 A 2 3 O ALA A 51 ? O ALA A 51 N ILE A 16 ? N ILE A 16 A 3 4 N LEU A 13 ? N LEU A 13 O VAL A 33 ? O VAL A 33 A 4 5 N GLU A 38 ? N GLU A 38 O LYS A 76 ? O LYS A 76 B 1 2 N MET A 25 ? N MET A 25 O GLU A 90 ? O GLU A 90 B 2 3 O LEU A 89 ? O LEU A 89 N GLY A 61 ? N GLY A 61 # _atom_sites.entry_id 2KPU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 HIS 96 96 96 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Dhaf_0833 (32-118)-1' 0.8 ? mM '[U-100% 13C; U-100% 15N]' 1 'ammonium acetate-2' 20 ? mM ? 1 'sodium chloride-3' 200 ? mM ? 1 'calcium chloride-4' 10 ? mM ? 1 'sodium azide-5' 0.02 ? % ? 1 'Dhaf_0833 (32-118)-6' 0.8 ? mM '[U-100% 13C; U-100% 15N]' 2 'ammonium acetate-7' 20 ? mM ? 2 'sodium chloride-8' 200 ? mM ? 2 'calcium chloride-9' 10 ? mM ? 2 'sodium azide-10' 0.02 ? % ? 2 'Dhaf_0833 (32-118)-11' 0.8 ? mM '[5% 13C from 5% U-13C glucose in growth medium; U-100% 15N]' 3 'ammonium acetate-12' 20 ? mM ? 3 'sodium chloride-13' 200 ? mM ? 3 'calcium chloride-14' 10 ? mM ? 3 'sodium azide-15' 0.02 ? % ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OD1 A ASP 54 ? ? HG A SER 56 ? ? 1.59 2 3 OD2 A ASP 8 ? ? HZ3 A LYS 36 ? ? 1.57 3 6 OD2 A ASP 54 ? ? HZ2 A LYS 68 ? ? 1.58 4 10 OE2 A GLU 90 ? ? HE2 A HIS 94 ? ? 1.59 5 12 HG2 A GLU 62 ? ? HG2 A GLN 88 ? ? 1.30 6 12 HZ3 A LYS 36 ? ? OE2 A GLU 38 ? ? 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 80 ? ? -144.55 25.21 2 1 HIS A 95 ? ? -91.98 -65.97 3 2 ASP A 8 ? ? 52.32 85.46 4 2 PRO A 31 ? ? -89.49 -157.71 5 2 ASN A 41 ? ? -160.92 80.47 6 2 HIS A 94 ? ? 68.25 110.13 7 3 SER A 2 ? ? -148.13 -30.60 8 3 LEU A 55 ? ? -105.60 51.97 9 3 ASN A 74 ? ? 76.31 -2.78 10 3 VAL A 78 ? ? -102.54 -63.36 11 3 HIS A 94 ? ? -67.99 -76.71 12 3 HIS A 95 ? ? -178.28 -36.79 13 4 ARG A 7 ? ? 63.71 -78.95 14 4 SER A 43 ? ? -131.64 -68.70 15 4 ILE A 44 ? ? 64.91 117.56 16 4 ASN A 74 ? ? 76.80 -41.19 17 4 VAL A 78 ? ? -114.62 -70.89 18 5 PRO A 60 ? ? -49.84 100.28 19 5 ASN A 74 ? ? 74.37 -39.73 20 5 HIS A 95 ? ? -164.85 107.97 21 6 SER A 2 ? ? -95.29 -67.49 22 6 ASN A 19 ? ? 56.26 77.75 23 6 PRO A 31 ? ? -77.67 -163.20 24 6 PRO A 42 ? ? -79.62 -71.95 25 6 SER A 43 ? ? -162.45 95.47 26 6 ASN A 45 ? ? -76.90 46.16 27 6 ASN A 74 ? ? -131.17 -56.25 28 6 VAL A 78 ? ? -94.29 -60.84 29 7 PRO A 31 ? ? -78.75 -164.05 30 7 PRO A 42 ? ? -80.14 -71.76 31 7 LEU A 55 ? ? -93.84 59.14 32 7 SER A 58 ? ? -144.95 21.19 33 7 ASN A 74 ? ? 72.78 -45.85 34 7 HIS A 93 ? ? -87.99 -76.67 35 7 HIS A 94 ? ? -168.47 -34.77 36 8 SER A 2 ? ? -171.00 -162.40 37 8 LYS A 18 ? ? -79.21 -78.24 38 8 ASN A 19 ? ? -110.61 75.83 39 8 PRO A 31 ? ? -69.33 -179.36 40 8 LEU A 55 ? ? -87.79 38.82 41 8 ASN A 74 ? ? 74.16 -44.03 42 8 HIS A 92 ? ? -82.66 33.39 43 9 PRO A 31 ? ? -87.05 -155.80 44 9 LEU A 55 ? ? -95.05 45.29 45 9 ASN A 74 ? ? 73.52 -33.96 46 10 THR A 4 ? ? -151.81 -59.44 47 10 PRO A 42 ? ? -79.76 -76.70 48 10 LEU A 55 ? ? -89.96 36.18 49 10 PRO A 73 ? ? -77.12 25.29 50 11 ARG A 7 ? ? -70.69 -76.00 51 11 LYS A 18 ? ? -97.41 -66.81 52 11 LEU A 55 ? ? -101.57 68.70 53 11 PRO A 73 ? ? -49.85 109.86 54 11 VAL A 78 ? ? -95.42 -63.84 55 11 HIS A 94 ? ? -166.93 -64.80 56 12 ASP A 8 ? ? 52.61 72.19 57 12 LYS A 18 ? ? -91.65 -71.57 58 12 ASN A 74 ? ? 75.17 -44.47 59 13 SER A 2 ? ? -101.26 -158.77 60 13 SER A 43 ? ? -117.63 -115.58 61 13 ILE A 44 ? ? 56.52 99.96 62 13 ASN A 74 ? ? 73.79 -23.38 63 13 VAL A 78 ? ? -104.49 -64.91 64 13 ARG A 83 ? ? -86.36 -70.21 65 14 ASN A 19 ? ? 73.89 -68.27 66 14 THR A 20 ? ? 48.13 97.76 67 14 PRO A 21 ? ? -63.96 -172.16 68 14 ALA A 22 ? ? -53.74 105.82 69 14 ASN A 41 ? ? -116.71 77.98 70 14 VAL A 78 ? ? -108.18 -60.46 71 15 ASP A 8 ? ? -163.34 97.93 72 15 SER A 58 ? ? -91.40 31.07 73 15 PRO A 71 ? ? -59.19 108.00 74 15 ASN A 74 ? ? -144.38 -1.42 75 16 LYS A 18 ? ? -90.42 -77.84 76 16 ASN A 23 ? ? 80.10 -38.09 77 16 LEU A 55 ? ? -98.49 44.18 78 16 SER A 58 ? ? -69.54 91.58 79 16 ASN A 74 ? ? 73.41 -45.30 80 17 LYS A 18 ? ? -71.05 -76.46 81 17 LEU A 55 ? ? -78.96 29.89 82 17 SER A 56 ? ? -65.52 95.65 83 17 SER A 58 ? ? 58.37 98.41 84 17 VAL A 78 ? ? -94.87 -60.47 85 18 PRO A 42 ? ? -79.87 -73.64 86 18 VAL A 78 ? ? -108.05 -69.13 87 19 ASN A 23 ? ? 75.28 -34.47 88 19 SER A 58 ? ? -92.94 38.12 89 19 ASN A 74 ? ? 72.27 -51.22 90 19 HIS A 94 ? ? 70.61 88.97 91 20 ASN A 45 ? ? -80.63 41.28 92 20 PRO A 60 ? ? -67.54 90.99 93 20 ASN A 74 ? ? 73.79 -44.42 #