HEADER ALLERGEN 23-OCT-09 2KPY TITLE SOLUTION STRUCTURE OF THE MAJOR ALLERGEN OF ARTEMISIA VULGARIS (ART V TITLE 2 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR POLLEN ALLERGEN ART V 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-132; COMPND 5 SYNONYM: DEFENSIN-LIKE PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTEMISIA VULGARIS; SOURCE 3 ORGANISM_COMMON: COMMON WORMWOOD; SOURCE 4 ORGANISM_TAXID: 4220; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI B(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS PARELLEL2 KEYWDS DEFENSIN-LIKE, POLY-PROLINE, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.RAZZERA,G.GADERMAIER,M.ALMEIDA,M.EGGER,B.JAHN-SCHMID,F.ALMEIDA, AUTHOR 2 F.FERREIRA,A.VALENTE REVDAT 3 14-JUN-23 2KPY 1 REMARK REVDAT 2 26-FEB-20 2KPY 1 REMARK REVDAT 1 06-OCT-10 2KPY 0 JRNL AUTH G.RAZZERA,G.GADERMAIER,V.DE PAULA,M.S.ALMEIDA,M.EGGER, JRNL AUTH 2 B.JAHN-SCHMID,F.C.ALMEIDA,F.FERREIRA,A.P.VALENTE JRNL TITL MAPPING THE INTERACTIONS BETWEEN A MAJOR POLLEN ALLERGEN AND JRNL TITL 2 HUMAN IGE ANTIBODIES. JRNL REF STRUCTURE V. 18 1011 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20696401 JRNL DOI 10.1016/J.STR.2010.05.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CYANA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101427. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] ART REMARK 210 V 1 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE, CARA 1.84, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 101.50 178.65 REMARK 500 1 LYS A 4 -171.48 -174.69 REMARK 500 1 THR A 12 27.63 -166.74 REMARK 500 1 SER A 14 -174.04 53.87 REMARK 500 1 LYS A 16 173.10 -54.02 REMARK 500 1 ASP A 18 -168.70 -121.79 REMARK 500 1 ASN A 19 -74.27 -97.29 REMARK 500 1 GLU A 41 94.50 55.99 REMARK 500 1 SER A 54 -69.16 71.09 REMARK 500 1 LYS A 55 -36.38 -152.83 REMARK 500 1 SER A 56 87.40 64.54 REMARK 500 1 ALA A 60 -85.97 65.01 REMARK 500 1 PRO A 62 -170.92 -69.74 REMARK 500 1 ALA A 63 69.07 -116.97 REMARK 500 1 ALA A 68 74.12 -152.87 REMARK 500 1 PRO A 71 -172.15 -69.75 REMARK 500 1 ALA A 73 -169.80 52.08 REMARK 500 1 SER A 78 73.32 -176.27 REMARK 500 1 ASP A 82 93.14 58.00 REMARK 500 1 SER A 85 69.65 -160.46 REMARK 500 1 ALA A 90 98.64 -62.71 REMARK 500 1 SER A 94 86.92 55.95 REMARK 500 1 ASP A 98 -69.39 72.13 REMARK 500 1 SER A 101 160.57 63.14 REMARK 500 1 PRO A 105 -173.52 -69.81 REMARK 500 1 THR A 107 96.61 58.63 REMARK 500 2 THR A 9 60.88 -101.24 REMARK 500 2 THR A 12 28.73 -168.22 REMARK 500 2 SER A 14 160.51 63.30 REMARK 500 2 ASP A 18 -168.65 -162.20 REMARK 500 2 ASN A 19 -68.20 -93.04 REMARK 500 2 GLU A 41 -169.75 54.12 REMARK 500 2 ALA A 60 -169.55 -173.98 REMARK 500 2 PRO A 62 -175.40 -69.75 REMARK 500 2 ALA A 63 71.60 -115.25 REMARK 500 2 ALA A 68 72.93 51.73 REMARK 500 2 SER A 76 71.89 60.73 REMARK 500 2 SER A 78 72.15 -115.33 REMARK 500 2 PRO A 80 -170.77 -69.82 REMARK 500 2 SER A 85 72.24 57.76 REMARK 500 2 ASP A 91 -74.54 -123.01 REMARK 500 2 SER A 94 86.91 52.75 REMARK 500 2 VAL A 97 72.12 55.07 REMARK 500 2 PRO A 105 -173.27 -69.76 REMARK 500 3 SER A 3 98.03 -177.69 REMARK 500 3 THR A 12 25.23 -150.23 REMARK 500 3 TYR A 13 -74.60 -78.30 REMARK 500 3 SER A 14 108.48 64.12 REMARK 500 3 CYS A 17 142.87 63.61 REMARK 500 3 ASP A 18 -164.31 -173.13 REMARK 500 REMARK 500 THIS ENTRY HAS 525 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16111 RELATED DB: BMRB DBREF 2KPY A 1 108 UNP Q84ZX5 ALL1_ARTVU 25 132 SEQRES 1 A 108 ALA GLY SER LYS LEU CYS GLU LYS THR SER LYS THR TYR SEQRES 2 A 108 SER GLY LYS CYS ASP ASN LYS LYS CYS ASP LYS LYS CYS SEQRES 3 A 108 ILE GLU TRP GLU LYS ALA GLN HIS GLY ALA CYS HIS LYS SEQRES 4 A 108 ARG GLU ALA GLY LYS GLU SER CYS PHE CYS TYR PHE ASP SEQRES 5 A 108 CYS SER LYS SER PRO PRO GLY ALA THR PRO ALA PRO PRO SEQRES 6 A 108 GLY ALA ALA PRO PRO PRO ALA ALA GLY GLY SER PRO SER SEQRES 7 A 108 PRO PRO ALA ASP GLY GLY SER PRO PRO PRO PRO ALA ASP SEQRES 8 A 108 GLY GLY SER PRO PRO VAL ASP GLY GLY SER PRO PRO PRO SEQRES 9 A 108 PRO SER THR HIS HELIX 1 1 ASN A 19 GLU A 30 1 12 SHEET 1 A 3 LYS A 4 THR A 9 0 SHEET 2 A 3 LYS A 44 CYS A 53 -1 O PHE A 51 N CYS A 6 SHEET 3 A 3 HIS A 34 ARG A 40 -1 N HIS A 38 O SER A 46 SSBOND 1 CYS A 6 CYS A 53 1555 1555 2.22 SSBOND 2 CYS A 17 CYS A 37 1555 1555 1.96 SSBOND 3 CYS A 22 CYS A 47 1555 1555 1.99 SSBOND 4 CYS A 26 CYS A 49 1555 1555 1.84 CISPEP 1 SER A 94 PRO A 95 1 -0.02 CISPEP 2 PRO A 102 PRO A 103 1 0.02 CISPEP 3 SER A 94 PRO A 95 2 -0.05 CISPEP 4 PRO A 102 PRO A 103 2 -0.08 CISPEP 5 SER A 94 PRO A 95 3 0.00 CISPEP 6 PRO A 102 PRO A 103 3 -0.02 CISPEP 7 SER A 94 PRO A 95 4 -0.04 CISPEP 8 PRO A 102 PRO A 103 4 -0.05 CISPEP 9 SER A 94 PRO A 95 5 -0.04 CISPEP 10 PRO A 102 PRO A 103 5 -0.08 CISPEP 11 SER A 94 PRO A 95 6 -0.02 CISPEP 12 PRO A 102 PRO A 103 6 0.00 CISPEP 13 SER A 94 PRO A 95 7 0.02 CISPEP 14 PRO A 102 PRO A 103 7 -0.04 CISPEP 15 SER A 94 PRO A 95 8 0.00 CISPEP 16 PRO A 102 PRO A 103 8 -0.07 CISPEP 17 SER A 94 PRO A 95 9 -0.03 CISPEP 18 PRO A 102 PRO A 103 9 -0.12 CISPEP 19 SER A 94 PRO A 95 10 0.04 CISPEP 20 PRO A 102 PRO A 103 10 -0.05 CISPEP 21 SER A 94 PRO A 95 11 -0.07 CISPEP 22 PRO A 102 PRO A 103 11 -0.04 CISPEP 23 SER A 94 PRO A 95 12 0.05 CISPEP 24 PRO A 102 PRO A 103 12 -0.01 CISPEP 25 SER A 94 PRO A 95 13 -0.06 CISPEP 26 PRO A 102 PRO A 103 13 -0.15 CISPEP 27 SER A 94 PRO A 95 14 0.00 CISPEP 28 PRO A 102 PRO A 103 14 0.01 CISPEP 29 SER A 94 PRO A 95 15 0.08 CISPEP 30 PRO A 102 PRO A 103 15 -0.07 CISPEP 31 SER A 94 PRO A 95 16 -0.06 CISPEP 32 PRO A 102 PRO A 103 16 -0.07 CISPEP 33 SER A 94 PRO A 95 17 -0.02 CISPEP 34 PRO A 102 PRO A 103 17 -0.04 CISPEP 35 SER A 94 PRO A 95 18 -0.03 CISPEP 36 PRO A 102 PRO A 103 18 -0.08 CISPEP 37 SER A 94 PRO A 95 19 0.03 CISPEP 38 PRO A 102 PRO A 103 19 -0.03 CISPEP 39 SER A 94 PRO A 95 20 -0.04 CISPEP 40 PRO A 102 PRO A 103 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1