data_2KQD # _entry.id 2KQD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KQD RCSB RCSB101442 WWPDB D_1000101442 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 16596 BMRB 'chemical shifts for this system' unspecified 2KQB PDB 'FIRST PBZ DOMAIN OF HUMAN APLF PROTEIN' unspecified 2KQC PDB 'SECOND PBZ DOMAIN OF HUMAN APLF PROTEIN' unspecified 2KQE PDB 'SECOND PBZ DOMAIN OF HUMAN APLF PROTEIN IN COMPLEX WITH RIBOFURANOSYLADENOSINE' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KQD _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Neuhaus, D.' 1 'Eustermann, S.' 2 'Brockmann, C.' 3 'Yang, J.' 4 # _citation.id primary _citation.title 'Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose).' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 241 _citation.page_last 243 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20098424 _citation.pdbx_database_id_DOI 10.1038/nsmb.1747 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eustermann, S.' 1 ? primary 'Brockmann, C.' 2 ? primary 'Mehrotra, P.V.' 3 ? primary 'Yang, J.C.' 4 ? primary 'Loakes, D.' 5 ? primary 'West, S.C.' 6 ? primary 'Ahel, I.' 7 ? primary 'Neuhaus, D.' 8 ? # _cell.entry_id 2KQD _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KQD _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Aprataxin and PNK-like factor' 10053.062 1 4.2.99.18 ? 'sequence database residues 363-451, PBZ-type 1 domain' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 4 non-polymer man alpha-D-ribofuranose 150.130 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Apurinic-apyrimidinic endonuclease APLF, PNK and APTX-like FHA domain-containing protein, XRCC1-interacting protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT LPVRNVLDE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT LPVRNVLDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 SER n 1 8 GLU n 1 9 GLY n 1 10 ASN n 1 11 LYS n 1 12 VAL n 1 13 LYS n 1 14 ARG n 1 15 THR n 1 16 SER n 1 17 CYS n 1 18 MET n 1 19 TYR n 1 20 GLY n 1 21 ALA n 1 22 ASN n 1 23 CYS n 1 24 TYR n 1 25 ARG n 1 26 LYS n 1 27 ASN n 1 28 PRO n 1 29 VAL n 1 30 HIS n 1 31 PHE n 1 32 GLN n 1 33 HIS n 1 34 PHE n 1 35 SER n 1 36 HIS n 1 37 PRO n 1 38 GLY n 1 39 ASP n 1 40 SER n 1 41 ASP n 1 42 TYR n 1 43 GLY n 1 44 GLY n 1 45 VAL n 1 46 GLN n 1 47 ILE n 1 48 VAL n 1 49 GLY n 1 50 GLN n 1 51 ASP n 1 52 GLU n 1 53 THR n 1 54 ASP n 1 55 ASP n 1 56 ARG n 1 57 PRO n 1 58 GLU n 1 59 CYS n 1 60 PRO n 1 61 TYR n 1 62 GLY n 1 63 PRO n 1 64 SER n 1 65 CYS n 1 66 TYR n 1 67 ARG n 1 68 LYS n 1 69 ASN n 1 70 PRO n 1 71 GLN n 1 72 HIS n 1 73 LYS n 1 74 ILE n 1 75 GLU n 1 76 TYR n 1 77 ARG n 1 78 HIS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 PRO n 1 83 VAL n 1 84 ARG n 1 85 ASN n 1 86 VAL n 1 87 LEU n 1 88 ASP n 1 89 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APLF, C2orf13, PALF, XIP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pGEX-6P-1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code APLF_HUMAN _struct_ref.pdbx_db_accession Q8IW19 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNTLPVRN VLDE ; _struct_ref.pdbx_align_begin 368 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KQD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IW19 _struct_ref_seq.db_align_beg 368 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 451 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 368 _struct_ref_seq.pdbx_auth_seq_align_end 451 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KQD GLY A 1 ? UNP Q8IW19 ? ? 'expression tag' 363 1 1 2KQD PRO A 2 ? UNP Q8IW19 ? ? 'expression tag' 364 2 1 2KQD LEU A 3 ? UNP Q8IW19 ? ? 'expression tag' 365 3 1 2KQD GLY A 4 ? UNP Q8IW19 ? ? 'expression tag' 366 4 1 2KQD SER A 5 ? UNP Q8IW19 ? ? 'expression tag' 367 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RIB 'D-saccharide, alpha linking' . alpha-D-ribofuranose ? 'C5 H10 O5' 150.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 3 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC full-width' 1 3 2 '2D 1H-1H NOESY' 1 4 2 '2D 1H-1H NOESY filtered' 1 5 2 '3D 1H-13C NOESY' 1 6 2 '2D 1H-1H TOCSY' 2 7 2 '2D 1H-13C HSQC full-width' 2 8 2 '2D 1H-1H NOESY' 2 9 2 '2D 1H-1H NOESY filtered' 2 10 2 '3D 1H-13C NOESY' 2 11 2 '2D 1H-1H TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.4 6.0 ambient ? 278 K 2 0.4 6.0 ambient ? 286 K 3 0.4 6.0 ambient ? 300 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Bruker DMX 2 'Bruker DMX' 500 Bruker DRX 3 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2KQD _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2KQD _pdbx_nmr_details.text ;The author states that NMR was carried out on a single fragment (363-451) containing both fingers F1 and F2 of APLF, but the structure calculations were carried out separately for each finger. This co-ordinate file includes residues 363-417 and contains F1 as well as the unstructured regions on either side. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KQD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 5.7 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.59 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method XPLOR-NIH # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KQD _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' XPLOR-NIH ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KQD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KQD _struct.title 'First PBZ domain of human APLF protein in complex with ribofuranosyladenosine' _struct.pdbx_descriptor 'Aprataxin and PNK-like factor (E.C.4.2.99.18)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KQD _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'ADP-ribosylation, DNA damage, DNA repair, Metal-binding, Nucleotide-binding, Nucleus, Zinc, Zinc-finger, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 2 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 29 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id HIS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 33 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 391 _struct_conf.end_auth_comp_id HIS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 395 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C ADN . "O2'" ? ? ? 1_555 D RIB . C1 ? ? A ADN 1002 A RIB 1003 1_555 ? ? ? ? ? ? ? 1.414 ? ? metalc1 metalc ? ? A CYS 17 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 379 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc2 metalc ? ? A CYS 23 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 385 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc3 metalc ? ? A HIS 30 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 392 A ZN 1001 1_555 ? ? ? ? ? ? ? 1.932 ? ? metalc4 metalc ? ? A HIS 36 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 398 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.113 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _atom_sites.entry_id 2KQD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 363 363 GLY GLY A . n A 1 2 PRO 2 364 364 PRO PRO A . n A 1 3 LEU 3 365 365 LEU LEU A . n A 1 4 GLY 4 366 366 GLY GLY A . n A 1 5 SER 5 367 367 SER SER A . n A 1 6 GLY 6 368 368 GLY GLY A . n A 1 7 SER 7 369 369 SER SER A . n A 1 8 GLU 8 370 370 GLU GLU A . n A 1 9 GLY 9 371 371 GLY GLY A . n A 1 10 ASN 10 372 372 ASN ASN A . n A 1 11 LYS 11 373 373 LYS LYS A . n A 1 12 VAL 12 374 374 VAL VAL A . n A 1 13 LYS 13 375 375 LYS LYS A . n A 1 14 ARG 14 376 376 ARG ARG A . n A 1 15 THR 15 377 377 THR THR A . n A 1 16 SER 16 378 378 SER SER A . n A 1 17 CYS 17 379 379 CYS CYS A . n A 1 18 MET 18 380 380 MET MET A . n A 1 19 TYR 19 381 381 TYR TYR A . n A 1 20 GLY 20 382 382 GLY GLY A . n A 1 21 ALA 21 383 383 ALA ALA A . n A 1 22 ASN 22 384 384 ASN ASN A . n A 1 23 CYS 23 385 385 CYS CYS A . n A 1 24 TYR 24 386 386 TYR TYR A . n A 1 25 ARG 25 387 387 ARG ARG A . n A 1 26 LYS 26 388 388 LYS LYS A . n A 1 27 ASN 27 389 389 ASN ASN A . n A 1 28 PRO 28 390 390 PRO PRO A . n A 1 29 VAL 29 391 391 VAL VAL A . n A 1 30 HIS 30 392 392 HIS HIS A . n A 1 31 PHE 31 393 393 PHE PHE A . n A 1 32 GLN 32 394 394 GLN GLN A . n A 1 33 HIS 33 395 395 HIS HIS A . n A 1 34 PHE 34 396 396 PHE PHE A . n A 1 35 SER 35 397 397 SER SER A . n A 1 36 HIS 36 398 398 HIS HIS A . n A 1 37 PRO 37 399 399 PRO PRO A . n A 1 38 GLY 38 400 400 GLY GLY A . n A 1 39 ASP 39 401 401 ASP ASP A . n A 1 40 SER 40 402 402 SER SER A . n A 1 41 ASP 41 403 403 ASP ASP A . n A 1 42 TYR 42 404 404 TYR TYR A . n A 1 43 GLY 43 405 405 GLY GLY A . n A 1 44 GLY 44 406 406 GLY GLY A . n A 1 45 VAL 45 407 407 VAL VAL A . n A 1 46 GLN 46 408 408 GLN GLN A . n A 1 47 ILE 47 409 409 ILE ILE A . n A 1 48 VAL 48 410 410 VAL VAL A . n A 1 49 GLY 49 411 411 GLY GLY A . n A 1 50 GLN 50 412 412 GLN GLN A . n A 1 51 ASP 51 413 413 ASP ASP A . n A 1 52 GLU 52 414 414 GLU GLU A . n A 1 53 THR 53 415 415 THR THR A . n A 1 54 ASP 54 416 416 ASP ASP A . n A 1 55 ASP 55 417 417 ASP ASP A . n A 1 56 ARG 56 418 ? ? ? A . n A 1 57 PRO 57 419 ? ? ? A . n A 1 58 GLU 58 420 ? ? ? A . n A 1 59 CYS 59 421 ? ? ? A . n A 1 60 PRO 60 422 ? ? ? A . n A 1 61 TYR 61 423 ? ? ? A . n A 1 62 GLY 62 424 ? ? ? A . n A 1 63 PRO 63 425 ? ? ? A . n A 1 64 SER 64 426 ? ? ? A . n A 1 65 CYS 65 427 ? ? ? A . n A 1 66 TYR 66 428 ? ? ? A . n A 1 67 ARG 67 429 ? ? ? A . n A 1 68 LYS 68 430 ? ? ? A . n A 1 69 ASN 69 431 ? ? ? A . n A 1 70 PRO 70 432 ? ? ? A . n A 1 71 GLN 71 433 ? ? ? A . n A 1 72 HIS 72 434 ? ? ? A . n A 1 73 LYS 73 435 ? ? ? A . n A 1 74 ILE 74 436 ? ? ? A . n A 1 75 GLU 75 437 ? ? ? A . n A 1 76 TYR 76 438 ? ? ? A . n A 1 77 ARG 77 439 ? ? ? A . n A 1 78 HIS 78 440 ? ? ? A . n A 1 79 ASN 79 441 ? ? ? A . n A 1 80 THR 80 442 ? ? ? A . n A 1 81 LEU 81 443 ? ? ? A . n A 1 82 PRO 82 444 ? ? ? A . n A 1 83 VAL 83 445 ? ? ? A . n A 1 84 ARG 84 446 ? ? ? A . n A 1 85 ASN 85 447 ? ? ? A . n A 1 86 VAL 86 448 ? ? ? A . n A 1 87 LEU 87 449 ? ? ? A . n A 1 88 ASP 88 450 ? ? ? A . n A 1 89 GLU 89 451 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1001 1001 ZN ZN A . C 3 ADN 1 1002 1002 ADN ADN A . D 4 RIB 1 1003 1003 RIB RIB A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 17 ? A CYS 379 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 23 ? A CYS 385 ? 1_555 108.4 ? 2 SG ? A CYS 17 ? A CYS 379 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 30 ? A HIS 392 ? 1_555 106.6 ? 3 SG ? A CYS 23 ? A CYS 385 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 30 ? A HIS 392 ? 1_555 108.8 ? 4 SG ? A CYS 17 ? A CYS 379 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 36 ? A HIS 398 ? 1_555 109.3 ? 5 SG ? A CYS 23 ? A CYS 385 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 36 ? A HIS 398 ? 1_555 112.3 ? 6 NE2 ? A HIS 30 ? A HIS 392 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 36 ? A HIS 398 ? 1_555 111.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_nmr_spectrometer 7 3 'Structure model' pdbx_struct_assembly 8 3 'Structure model' pdbx_struct_conn_angle 9 3 'Structure model' pdbx_struct_oper_list 10 3 'Structure model' struct_conn 11 3 'Structure model' struct_conn_type 12 3 'Structure model' struct_ref_seq_dif 13 3 'Structure model' struct_site 14 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_pdbx_nmr_spectrometer.model' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.value' 19 3 'Structure model' '_struct_conn.conn_type_id' 20 3 'Structure model' '_struct_conn.id' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn_type.id' 35 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR ; # _pdbx_entry_details.entry_id 2KQD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'RESIDUES 418-451 ARE NOT SHOWN IN THE COORDINATES BECAUSE STRUCTURE CALCULATIONS WERE CARRIED OUT ON RESIDUES 363-417 ONLY.' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'potassium pyrophosphate-1' 20 ? mM ? 1 'sodium chloride-2' 200 ? mM ? 1 'zinc sulphate-3' 100 ? uM ? 1 DTT-4 2 ? mM '[U-2H]' 1 APLF_363-451-5 0.8 ? mM '[U-98% 13C; U-98% 15N]' 1 RFA-6 2 ? mM ? 1 'potassium pyrophosphate-7' 20 ? mM ? 2 'sodium chloride-8' 200 ? mM ? 2 'zinc sulphate-9' 100 ? uM ? 2 DTT-10 2 ? mM '[U-2H]' 2 APLF_363-451-11 0.8 ? mM '[U-98% 13C; U-98% 15N]' 2 RFA-12 2 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KQD _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total ? _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 11 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 12 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 13 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 377 ? ? H A SER 397 ? ? 1.60 2 4 O A THR 377 ? ? H A SER 397 ? ? 1.60 3 6 O A THR 377 ? ? H A SER 397 ? ? 1.59 4 7 O A THR 377 ? ? H A SER 397 ? ? 1.59 5 9 O A THR 377 ? ? H A SER 397 ? ? 1.59 6 10 O A THR 377 ? ? H A SER 397 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 367 ? ? -142.82 57.31 2 1 ASN A 372 ? ? -153.72 37.16 3 1 LYS A 373 ? ? -158.29 40.49 4 1 TYR A 381 ? ? -140.61 37.37 5 1 CYS A 385 ? ? -53.02 88.74 6 1 LYS A 388 ? ? -161.04 111.98 7 1 GLN A 408 ? ? -105.32 71.87 8 1 ILE A 409 ? ? 50.81 71.96 9 1 ASP A 413 ? ? -159.27 39.46 10 2 ASN A 372 ? ? -145.29 -65.90 11 2 TYR A 381 ? ? -140.54 36.15 12 2 CYS A 385 ? ? -49.11 92.20 13 2 ASP A 413 ? ? -144.55 42.67 14 3 SER A 369 ? ? -117.31 56.48 15 3 CYS A 385 ? ? -51.92 90.76 16 3 LYS A 388 ? ? -153.59 84.86 17 3 VAL A 407 ? ? -115.58 64.89 18 3 ILE A 409 ? ? -103.71 65.57 19 3 VAL A 410 ? ? -112.67 77.99 20 3 THR A 415 ? ? -113.55 66.38 21 4 ASN A 372 ? ? -138.53 -63.83 22 4 CYS A 385 ? ? -50.18 87.93 23 4 PRO A 390 ? ? -71.59 -76.33 24 4 VAL A 391 ? ? -38.68 -33.16 25 4 GLN A 408 ? ? -152.60 83.03 26 4 ILE A 409 ? ? -110.26 76.32 27 4 VAL A 410 ? ? -115.79 69.35 28 4 ASP A 413 ? ? -169.15 44.26 29 5 SER A 369 ? ? -140.20 39.81 30 5 LYS A 373 ? ? 52.63 75.67 31 5 CYS A 385 ? ? -53.54 85.89 32 5 VAL A 407 ? ? 34.52 63.95 33 5 ILE A 409 ? ? -111.31 67.24 34 5 VAL A 410 ? ? -115.18 73.50 35 6 LEU A 365 ? ? -142.62 -59.79 36 6 SER A 369 ? ? -142.39 56.44 37 6 VAL A 410 ? ? -119.39 68.37 38 6 ASP A 413 ? ? -160.08 40.25 39 6 GLU A 414 ? ? -114.26 62.26 40 6 THR A 415 ? ? -113.09 65.21 41 6 ASP A 416 ? ? -140.57 40.44 42 7 LEU A 365 ? ? 53.14 78.42 43 7 SER A 367 ? ? 54.55 99.59 44 7 ASN A 372 ? ? -147.14 -58.75 45 7 CYS A 385 ? ? -49.67 87.50 46 7 VAL A 407 ? ? -102.83 70.79 47 7 ILE A 409 ? ? -114.12 69.61 48 7 VAL A 410 ? ? -118.87 63.93 49 7 ASP A 413 ? ? -172.25 46.31 50 7 THR A 415 ? ? -116.35 66.38 51 8 ASN A 372 ? ? -146.57 -66.12 52 8 LYS A 373 ? ? -158.06 73.28 53 8 ARG A 376 ? ? -60.46 -177.22 54 8 CYS A 379 ? ? -38.56 151.35 55 8 CYS A 385 ? ? -47.02 89.54 56 8 TYR A 404 ? ? -39.06 125.07 57 8 VAL A 407 ? ? -105.72 61.30 58 8 VAL A 410 ? ? -119.86 70.96 59 8 ASP A 413 ? ? -141.39 36.01 60 8 THR A 415 ? ? -116.72 66.90 61 9 LEU A 365 ? ? -133.75 -60.23 62 9 CYS A 385 ? ? -47.81 90.12 63 9 VAL A 407 ? ? -23.36 102.05 64 10 ASN A 372 ? ? -137.27 -65.00 65 10 CYS A 385 ? ? -43.75 88.78 66 10 PRO A 390 ? ? -69.73 -83.78 67 10 VAL A 391 ? ? -38.64 -26.48 68 10 ILE A 409 ? ? -103.08 78.08 69 10 VAL A 410 ? ? -113.53 63.67 70 10 GLN A 412 ? ? 65.85 -66.08 71 10 ASP A 413 ? ? -159.69 39.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 418 ? A ARG 56 2 1 Y 1 A PRO 419 ? A PRO 57 3 1 Y 1 A GLU 420 ? A GLU 58 4 1 Y 1 A CYS 421 ? A CYS 59 5 1 Y 1 A PRO 422 ? A PRO 60 6 1 Y 1 A TYR 423 ? A TYR 61 7 1 Y 1 A GLY 424 ? A GLY 62 8 1 Y 1 A PRO 425 ? A PRO 63 9 1 Y 1 A SER 426 ? A SER 64 10 1 Y 1 A CYS 427 ? A CYS 65 11 1 Y 1 A TYR 428 ? A TYR 66 12 1 Y 1 A ARG 429 ? A ARG 67 13 1 Y 1 A LYS 430 ? A LYS 68 14 1 Y 1 A ASN 431 ? A ASN 69 15 1 Y 1 A PRO 432 ? A PRO 70 16 1 Y 1 A GLN 433 ? A GLN 71 17 1 Y 1 A HIS 434 ? A HIS 72 18 1 Y 1 A LYS 435 ? A LYS 73 19 1 Y 1 A ILE 436 ? A ILE 74 20 1 Y 1 A GLU 437 ? A GLU 75 21 1 Y 1 A TYR 438 ? A TYR 76 22 1 Y 1 A ARG 439 ? A ARG 77 23 1 Y 1 A HIS 440 ? A HIS 78 24 1 Y 1 A ASN 441 ? A ASN 79 25 1 Y 1 A THR 442 ? A THR 80 26 1 Y 1 A LEU 443 ? A LEU 81 27 1 Y 1 A PRO 444 ? A PRO 82 28 1 Y 1 A VAL 445 ? A VAL 83 29 1 Y 1 A ARG 446 ? A ARG 84 30 1 Y 1 A ASN 447 ? A ASN 85 31 1 Y 1 A VAL 448 ? A VAL 86 32 1 Y 1 A LEU 449 ? A LEU 87 33 1 Y 1 A ASP 450 ? A ASP 88 34 1 Y 1 A GLU 451 ? A GLU 89 35 2 Y 1 A ARG 418 ? A ARG 56 36 2 Y 1 A PRO 419 ? A PRO 57 37 2 Y 1 A GLU 420 ? A GLU 58 38 2 Y 1 A CYS 421 ? A CYS 59 39 2 Y 1 A PRO 422 ? A PRO 60 40 2 Y 1 A TYR 423 ? A TYR 61 41 2 Y 1 A GLY 424 ? A GLY 62 42 2 Y 1 A PRO 425 ? A PRO 63 43 2 Y 1 A SER 426 ? A SER 64 44 2 Y 1 A CYS 427 ? A CYS 65 45 2 Y 1 A TYR 428 ? A TYR 66 46 2 Y 1 A ARG 429 ? A ARG 67 47 2 Y 1 A LYS 430 ? A LYS 68 48 2 Y 1 A ASN 431 ? A ASN 69 49 2 Y 1 A PRO 432 ? A PRO 70 50 2 Y 1 A GLN 433 ? A GLN 71 51 2 Y 1 A HIS 434 ? A HIS 72 52 2 Y 1 A LYS 435 ? A LYS 73 53 2 Y 1 A ILE 436 ? A ILE 74 54 2 Y 1 A GLU 437 ? A GLU 75 55 2 Y 1 A TYR 438 ? A TYR 76 56 2 Y 1 A ARG 439 ? A ARG 77 57 2 Y 1 A HIS 440 ? A HIS 78 58 2 Y 1 A ASN 441 ? A ASN 79 59 2 Y 1 A THR 442 ? A THR 80 60 2 Y 1 A LEU 443 ? A LEU 81 61 2 Y 1 A PRO 444 ? A PRO 82 62 2 Y 1 A VAL 445 ? A VAL 83 63 2 Y 1 A ARG 446 ? A ARG 84 64 2 Y 1 A ASN 447 ? A ASN 85 65 2 Y 1 A VAL 448 ? A VAL 86 66 2 Y 1 A LEU 449 ? A LEU 87 67 2 Y 1 A ASP 450 ? A ASP 88 68 2 Y 1 A GLU 451 ? A GLU 89 69 3 Y 1 A ARG 418 ? A ARG 56 70 3 Y 1 A PRO 419 ? A PRO 57 71 3 Y 1 A GLU 420 ? A GLU 58 72 3 Y 1 A CYS 421 ? A CYS 59 73 3 Y 1 A PRO 422 ? A PRO 60 74 3 Y 1 A TYR 423 ? A TYR 61 75 3 Y 1 A GLY 424 ? A GLY 62 76 3 Y 1 A PRO 425 ? A PRO 63 77 3 Y 1 A SER 426 ? A SER 64 78 3 Y 1 A CYS 427 ? A CYS 65 79 3 Y 1 A TYR 428 ? A TYR 66 80 3 Y 1 A ARG 429 ? A ARG 67 81 3 Y 1 A LYS 430 ? A LYS 68 82 3 Y 1 A ASN 431 ? A ASN 69 83 3 Y 1 A PRO 432 ? A PRO 70 84 3 Y 1 A GLN 433 ? A GLN 71 85 3 Y 1 A HIS 434 ? A HIS 72 86 3 Y 1 A LYS 435 ? A LYS 73 87 3 Y 1 A ILE 436 ? A ILE 74 88 3 Y 1 A GLU 437 ? A GLU 75 89 3 Y 1 A TYR 438 ? A TYR 76 90 3 Y 1 A ARG 439 ? A ARG 77 91 3 Y 1 A HIS 440 ? A HIS 78 92 3 Y 1 A ASN 441 ? A ASN 79 93 3 Y 1 A THR 442 ? A THR 80 94 3 Y 1 A LEU 443 ? A LEU 81 95 3 Y 1 A PRO 444 ? A PRO 82 96 3 Y 1 A VAL 445 ? A VAL 83 97 3 Y 1 A ARG 446 ? A ARG 84 98 3 Y 1 A ASN 447 ? A ASN 85 99 3 Y 1 A VAL 448 ? A VAL 86 100 3 Y 1 A LEU 449 ? A LEU 87 101 3 Y 1 A ASP 450 ? A ASP 88 102 3 Y 1 A GLU 451 ? A GLU 89 103 4 Y 1 A ARG 418 ? A ARG 56 104 4 Y 1 A PRO 419 ? A PRO 57 105 4 Y 1 A GLU 420 ? A GLU 58 106 4 Y 1 A CYS 421 ? A CYS 59 107 4 Y 1 A PRO 422 ? A PRO 60 108 4 Y 1 A TYR 423 ? A TYR 61 109 4 Y 1 A GLY 424 ? A GLY 62 110 4 Y 1 A PRO 425 ? A PRO 63 111 4 Y 1 A SER 426 ? A SER 64 112 4 Y 1 A CYS 427 ? A CYS 65 113 4 Y 1 A TYR 428 ? A TYR 66 114 4 Y 1 A ARG 429 ? A ARG 67 115 4 Y 1 A LYS 430 ? A LYS 68 116 4 Y 1 A ASN 431 ? A ASN 69 117 4 Y 1 A PRO 432 ? A PRO 70 118 4 Y 1 A GLN 433 ? A GLN 71 119 4 Y 1 A HIS 434 ? A HIS 72 120 4 Y 1 A LYS 435 ? A LYS 73 121 4 Y 1 A ILE 436 ? A ILE 74 122 4 Y 1 A GLU 437 ? A GLU 75 123 4 Y 1 A TYR 438 ? A TYR 76 124 4 Y 1 A ARG 439 ? A ARG 77 125 4 Y 1 A HIS 440 ? A HIS 78 126 4 Y 1 A ASN 441 ? A ASN 79 127 4 Y 1 A THR 442 ? A THR 80 128 4 Y 1 A LEU 443 ? A LEU 81 129 4 Y 1 A PRO 444 ? A PRO 82 130 4 Y 1 A VAL 445 ? A VAL 83 131 4 Y 1 A ARG 446 ? A ARG 84 132 4 Y 1 A ASN 447 ? A ASN 85 133 4 Y 1 A VAL 448 ? A VAL 86 134 4 Y 1 A LEU 449 ? A LEU 87 135 4 Y 1 A ASP 450 ? A ASP 88 136 4 Y 1 A GLU 451 ? A GLU 89 137 5 Y 1 A ARG 418 ? A ARG 56 138 5 Y 1 A PRO 419 ? A PRO 57 139 5 Y 1 A GLU 420 ? A GLU 58 140 5 Y 1 A CYS 421 ? A CYS 59 141 5 Y 1 A PRO 422 ? A PRO 60 142 5 Y 1 A TYR 423 ? A TYR 61 143 5 Y 1 A GLY 424 ? A GLY 62 144 5 Y 1 A PRO 425 ? A PRO 63 145 5 Y 1 A SER 426 ? A SER 64 146 5 Y 1 A CYS 427 ? A CYS 65 147 5 Y 1 A TYR 428 ? A TYR 66 148 5 Y 1 A ARG 429 ? A ARG 67 149 5 Y 1 A LYS 430 ? A LYS 68 150 5 Y 1 A ASN 431 ? A ASN 69 151 5 Y 1 A PRO 432 ? A PRO 70 152 5 Y 1 A GLN 433 ? A GLN 71 153 5 Y 1 A HIS 434 ? A HIS 72 154 5 Y 1 A LYS 435 ? A LYS 73 155 5 Y 1 A ILE 436 ? A ILE 74 156 5 Y 1 A GLU 437 ? A GLU 75 157 5 Y 1 A TYR 438 ? A TYR 76 158 5 Y 1 A ARG 439 ? A ARG 77 159 5 Y 1 A HIS 440 ? A HIS 78 160 5 Y 1 A ASN 441 ? A ASN 79 161 5 Y 1 A THR 442 ? A THR 80 162 5 Y 1 A LEU 443 ? A LEU 81 163 5 Y 1 A PRO 444 ? A PRO 82 164 5 Y 1 A VAL 445 ? A VAL 83 165 5 Y 1 A ARG 446 ? A ARG 84 166 5 Y 1 A ASN 447 ? A ASN 85 167 5 Y 1 A VAL 448 ? A VAL 86 168 5 Y 1 A LEU 449 ? A LEU 87 169 5 Y 1 A ASP 450 ? A ASP 88 170 5 Y 1 A GLU 451 ? A GLU 89 171 6 Y 1 A ARG 418 ? A ARG 56 172 6 Y 1 A PRO 419 ? A PRO 57 173 6 Y 1 A GLU 420 ? A GLU 58 174 6 Y 1 A CYS 421 ? A CYS 59 175 6 Y 1 A PRO 422 ? A PRO 60 176 6 Y 1 A TYR 423 ? A TYR 61 177 6 Y 1 A GLY 424 ? A GLY 62 178 6 Y 1 A PRO 425 ? A PRO 63 179 6 Y 1 A SER 426 ? A SER 64 180 6 Y 1 A CYS 427 ? A CYS 65 181 6 Y 1 A TYR 428 ? A TYR 66 182 6 Y 1 A ARG 429 ? A ARG 67 183 6 Y 1 A LYS 430 ? A LYS 68 184 6 Y 1 A ASN 431 ? A ASN 69 185 6 Y 1 A PRO 432 ? A PRO 70 186 6 Y 1 A GLN 433 ? A GLN 71 187 6 Y 1 A HIS 434 ? A HIS 72 188 6 Y 1 A LYS 435 ? A LYS 73 189 6 Y 1 A ILE 436 ? A ILE 74 190 6 Y 1 A GLU 437 ? A GLU 75 191 6 Y 1 A TYR 438 ? A TYR 76 192 6 Y 1 A ARG 439 ? A ARG 77 193 6 Y 1 A HIS 440 ? A HIS 78 194 6 Y 1 A ASN 441 ? A ASN 79 195 6 Y 1 A THR 442 ? A THR 80 196 6 Y 1 A LEU 443 ? A LEU 81 197 6 Y 1 A PRO 444 ? A PRO 82 198 6 Y 1 A VAL 445 ? A VAL 83 199 6 Y 1 A ARG 446 ? A ARG 84 200 6 Y 1 A ASN 447 ? A ASN 85 201 6 Y 1 A VAL 448 ? A VAL 86 202 6 Y 1 A LEU 449 ? A LEU 87 203 6 Y 1 A ASP 450 ? A ASP 88 204 6 Y 1 A GLU 451 ? A GLU 89 205 7 Y 1 A ARG 418 ? A ARG 56 206 7 Y 1 A PRO 419 ? A PRO 57 207 7 Y 1 A GLU 420 ? A GLU 58 208 7 Y 1 A CYS 421 ? A CYS 59 209 7 Y 1 A PRO 422 ? A PRO 60 210 7 Y 1 A TYR 423 ? A TYR 61 211 7 Y 1 A GLY 424 ? A GLY 62 212 7 Y 1 A PRO 425 ? A PRO 63 213 7 Y 1 A SER 426 ? A SER 64 214 7 Y 1 A CYS 427 ? A CYS 65 215 7 Y 1 A TYR 428 ? A TYR 66 216 7 Y 1 A ARG 429 ? A ARG 67 217 7 Y 1 A LYS 430 ? A LYS 68 218 7 Y 1 A ASN 431 ? A ASN 69 219 7 Y 1 A PRO 432 ? A PRO 70 220 7 Y 1 A GLN 433 ? A GLN 71 221 7 Y 1 A HIS 434 ? A HIS 72 222 7 Y 1 A LYS 435 ? A LYS 73 223 7 Y 1 A ILE 436 ? A ILE 74 224 7 Y 1 A GLU 437 ? A GLU 75 225 7 Y 1 A TYR 438 ? A TYR 76 226 7 Y 1 A ARG 439 ? A ARG 77 227 7 Y 1 A HIS 440 ? A HIS 78 228 7 Y 1 A ASN 441 ? A ASN 79 229 7 Y 1 A THR 442 ? A THR 80 230 7 Y 1 A LEU 443 ? A LEU 81 231 7 Y 1 A PRO 444 ? A PRO 82 232 7 Y 1 A VAL 445 ? A VAL 83 233 7 Y 1 A ARG 446 ? A ARG 84 234 7 Y 1 A ASN 447 ? A ASN 85 235 7 Y 1 A VAL 448 ? A VAL 86 236 7 Y 1 A LEU 449 ? A LEU 87 237 7 Y 1 A ASP 450 ? A ASP 88 238 7 Y 1 A GLU 451 ? A GLU 89 239 8 Y 1 A ARG 418 ? A ARG 56 240 8 Y 1 A PRO 419 ? A PRO 57 241 8 Y 1 A GLU 420 ? A GLU 58 242 8 Y 1 A CYS 421 ? A CYS 59 243 8 Y 1 A PRO 422 ? A PRO 60 244 8 Y 1 A TYR 423 ? A TYR 61 245 8 Y 1 A GLY 424 ? A GLY 62 246 8 Y 1 A PRO 425 ? A PRO 63 247 8 Y 1 A SER 426 ? A SER 64 248 8 Y 1 A CYS 427 ? A CYS 65 249 8 Y 1 A TYR 428 ? A TYR 66 250 8 Y 1 A ARG 429 ? A ARG 67 251 8 Y 1 A LYS 430 ? A LYS 68 252 8 Y 1 A ASN 431 ? A ASN 69 253 8 Y 1 A PRO 432 ? A PRO 70 254 8 Y 1 A GLN 433 ? A GLN 71 255 8 Y 1 A HIS 434 ? A HIS 72 256 8 Y 1 A LYS 435 ? A LYS 73 257 8 Y 1 A ILE 436 ? A ILE 74 258 8 Y 1 A GLU 437 ? A GLU 75 259 8 Y 1 A TYR 438 ? A TYR 76 260 8 Y 1 A ARG 439 ? A ARG 77 261 8 Y 1 A HIS 440 ? A HIS 78 262 8 Y 1 A ASN 441 ? A ASN 79 263 8 Y 1 A THR 442 ? A THR 80 264 8 Y 1 A LEU 443 ? A LEU 81 265 8 Y 1 A PRO 444 ? A PRO 82 266 8 Y 1 A VAL 445 ? A VAL 83 267 8 Y 1 A ARG 446 ? A ARG 84 268 8 Y 1 A ASN 447 ? A ASN 85 269 8 Y 1 A VAL 448 ? A VAL 86 270 8 Y 1 A LEU 449 ? A LEU 87 271 8 Y 1 A ASP 450 ? A ASP 88 272 8 Y 1 A GLU 451 ? A GLU 89 273 9 Y 1 A ARG 418 ? A ARG 56 274 9 Y 1 A PRO 419 ? A PRO 57 275 9 Y 1 A GLU 420 ? A GLU 58 276 9 Y 1 A CYS 421 ? A CYS 59 277 9 Y 1 A PRO 422 ? A PRO 60 278 9 Y 1 A TYR 423 ? A TYR 61 279 9 Y 1 A GLY 424 ? A GLY 62 280 9 Y 1 A PRO 425 ? A PRO 63 281 9 Y 1 A SER 426 ? A SER 64 282 9 Y 1 A CYS 427 ? A CYS 65 283 9 Y 1 A TYR 428 ? A TYR 66 284 9 Y 1 A ARG 429 ? A ARG 67 285 9 Y 1 A LYS 430 ? A LYS 68 286 9 Y 1 A ASN 431 ? A ASN 69 287 9 Y 1 A PRO 432 ? A PRO 70 288 9 Y 1 A GLN 433 ? A GLN 71 289 9 Y 1 A HIS 434 ? A HIS 72 290 9 Y 1 A LYS 435 ? A LYS 73 291 9 Y 1 A ILE 436 ? A ILE 74 292 9 Y 1 A GLU 437 ? A GLU 75 293 9 Y 1 A TYR 438 ? A TYR 76 294 9 Y 1 A ARG 439 ? A ARG 77 295 9 Y 1 A HIS 440 ? A HIS 78 296 9 Y 1 A ASN 441 ? A ASN 79 297 9 Y 1 A THR 442 ? A THR 80 298 9 Y 1 A LEU 443 ? A LEU 81 299 9 Y 1 A PRO 444 ? A PRO 82 300 9 Y 1 A VAL 445 ? A VAL 83 301 9 Y 1 A ARG 446 ? A ARG 84 302 9 Y 1 A ASN 447 ? A ASN 85 303 9 Y 1 A VAL 448 ? A VAL 86 304 9 Y 1 A LEU 449 ? A LEU 87 305 9 Y 1 A ASP 450 ? A ASP 88 306 9 Y 1 A GLU 451 ? A GLU 89 307 10 Y 1 A ARG 418 ? A ARG 56 308 10 Y 1 A PRO 419 ? A PRO 57 309 10 Y 1 A GLU 420 ? A GLU 58 310 10 Y 1 A CYS 421 ? A CYS 59 311 10 Y 1 A PRO 422 ? A PRO 60 312 10 Y 1 A TYR 423 ? A TYR 61 313 10 Y 1 A GLY 424 ? A GLY 62 314 10 Y 1 A PRO 425 ? A PRO 63 315 10 Y 1 A SER 426 ? A SER 64 316 10 Y 1 A CYS 427 ? A CYS 65 317 10 Y 1 A TYR 428 ? A TYR 66 318 10 Y 1 A ARG 429 ? A ARG 67 319 10 Y 1 A LYS 430 ? A LYS 68 320 10 Y 1 A ASN 431 ? A ASN 69 321 10 Y 1 A PRO 432 ? A PRO 70 322 10 Y 1 A GLN 433 ? A GLN 71 323 10 Y 1 A HIS 434 ? A HIS 72 324 10 Y 1 A LYS 435 ? A LYS 73 325 10 Y 1 A ILE 436 ? A ILE 74 326 10 Y 1 A GLU 437 ? A GLU 75 327 10 Y 1 A TYR 438 ? A TYR 76 328 10 Y 1 A ARG 439 ? A ARG 77 329 10 Y 1 A HIS 440 ? A HIS 78 330 10 Y 1 A ASN 441 ? A ASN 79 331 10 Y 1 A THR 442 ? A THR 80 332 10 Y 1 A LEU 443 ? A LEU 81 333 10 Y 1 A PRO 444 ? A PRO 82 334 10 Y 1 A VAL 445 ? A VAL 83 335 10 Y 1 A ARG 446 ? A ARG 84 336 10 Y 1 A ASN 447 ? A ASN 85 337 10 Y 1 A VAL 448 ? A VAL 86 338 10 Y 1 A LEU 449 ? A LEU 87 339 10 Y 1 A ASP 450 ? A ASP 88 340 10 Y 1 A GLU 451 ? A GLU 89 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RIB 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DRibfa RIB 'COMMON NAME' GMML 1.0 a-D-ribofuranose RIB 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Ribf RIB 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rib # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 ADENOSINE ADN 4 alpha-D-ribofuranose RIB #