HEADER METAL BINDING PROTEIN 24-NOV-09 2KQY TITLE SOLUTION STRUCTURE OF AVIAN THYMIC HORMONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARVALBUMIN, THYMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AVIAN THYMIC HORMONE, ATH, THYMUS-SPECIFIC ANTIGEN T1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS METAL-BINDING PROTEIN, PARVALBUMIN, EF-HAND PROTEIN, CALCIUM, METAL KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.T.HENZL REVDAT 4 08-MAY-24 2KQY 1 REMARK REVDAT 3 14-JUN-23 2KQY 1 REMARK REVDAT 2 26-FEB-20 2KQY 1 REMARK REVDAT 1 07-APR-10 2KQY 0 JRNL AUTH J.P.SCHUERMANN,A.TAN,J.J.TANNER,M.T.HENZL JRNL TITL STRUCTURE OF AVIAN THYMIC HORMONE, A HIGH-AFFINITY AVIAN JRNL TITL 2 BETA-PARVALBUMIN, IN THE CA(2+)-FREE AND CA(2+)-BOUND JRNL TITL 3 STATES. JRNL REF J.MOL.BIOL. V. 397 991 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20156445 JRNL DOI 10.1016/J.JMB.2010.02.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000101463. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.16 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 150 MM SODIUM CHLORIDE-1, 10 MM REMARK 210 MES-2, 5 MM THP-3, 3 MM [U-98% REMARK 210 13C; U-98% 15N] ATH-4, 90% H2O/ REMARK 210 10% D2O; 150 MM SODIUM CHLORIDE- REMARK 210 5, 10 MM MES-6, 5 MM THP-7, 3 MM REMARK 210 [U-15% 13C; U-98% 15N] ATH-8, 90% REMARK 210 H2O/10% D2O; 150 MM SODIUM REMARK 210 CHLORIDE-9, 10 MM MES-10, 5 MM REMARK 210 THP-11, 3 MM [U-98% 15N] ATH-12, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCACOCANH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D 1H-15N TOCSY; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, VNMRJ, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 16 36.70 -93.86 REMARK 500 1 PRO A 40 75.25 -69.74 REMARK 500 1 ASP A 41 -44.85 -179.00 REMARK 500 1 ASP A 51 154.05 -43.00 REMARK 500 1 ASP A 53 19.64 -146.71 REMARK 500 1 ARG A 75 -74.62 -45.46 REMARK 500 1 THR A 78 -167.83 -128.90 REMARK 500 1 ALA A 80 -37.80 178.90 REMARK 500 1 ASP A 90 103.12 -51.18 REMARK 500 1 ASP A 94 96.01 -172.65 REMARK 500 2 PRO A 40 72.85 -69.77 REMARK 500 2 ASP A 41 -32.33 -177.68 REMARK 500 2 ASP A 51 -179.61 -56.29 REMARK 500 2 GLN A 52 -50.46 -156.41 REMARK 500 2 ASP A 53 40.85 -160.34 REMARK 500 2 LYS A 54 30.88 -95.67 REMARK 500 2 ARG A 75 -75.37 -47.29 REMARK 500 2 THR A 78 -169.03 -121.26 REMARK 500 2 ALA A 80 -38.14 -177.79 REMARK 500 2 ASP A 90 102.83 -51.87 REMARK 500 3 ALA A 20 -167.66 -113.39 REMARK 500 3 ASP A 22 24.27 -146.84 REMARK 500 3 PRO A 40 74.29 -69.82 REMARK 500 3 ASP A 41 -32.23 177.97 REMARK 500 3 ASP A 51 131.84 -39.52 REMARK 500 3 ASP A 53 23.72 -152.32 REMARK 500 3 ARG A 75 -75.37 -46.40 REMARK 500 3 THR A 78 -167.85 -126.49 REMARK 500 3 ALA A 80 -36.97 -178.61 REMARK 500 3 ASP A 90 101.17 -53.33 REMARK 500 4 SER A 16 47.66 -106.98 REMARK 500 4 ASP A 22 45.51 -153.70 REMARK 500 4 PHE A 24 91.96 -58.70 REMARK 500 4 THR A 32 174.83 -52.91 REMARK 500 4 PRO A 40 74.12 -69.75 REMARK 500 4 ASP A 41 -43.64 -176.33 REMARK 500 4 ASP A 51 -178.57 -56.76 REMARK 500 4 GLN A 52 -46.26 -157.94 REMARK 500 4 ASP A 53 39.91 -167.64 REMARK 500 4 LYS A 54 34.23 -96.06 REMARK 500 4 ALA A 74 176.77 -57.70 REMARK 500 4 THR A 78 -169.94 -129.93 REMARK 500 4 ALA A 80 -47.53 -177.92 REMARK 500 4 ASP A 90 103.01 -51.22 REMARK 500 4 ASP A 92 20.20 -146.72 REMARK 500 4 ASP A 94 61.29 63.22 REMARK 500 5 THR A 32 -175.78 -57.83 REMARK 500 5 PRO A 40 75.13 -69.76 REMARK 500 5 ASP A 41 -43.91 -179.29 REMARK 500 5 THR A 78 -169.57 -117.85 REMARK 500 REMARK 500 THIS ENTRY HAS 215 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SAME PROTEIN IN CALCIUM-BOUND FORM REMARK 900 RELATED ID: 16617 RELATED DB: BMRB DBREF 2KQY A 1 108 UNP P19753 PRVT_CHICK 2 109 SEQRES 1 A 108 ALA ILE THR ASP ILE LEU SER ALA LYS ASP ILE GLU SER SEQRES 2 A 108 ALA LEU SER SER CYS GLN ALA ALA ASP SER PHE ASN TYR SEQRES 3 A 108 LYS SER PHE PHE SER THR VAL GLY LEU SER SER LYS THR SEQRES 4 A 108 PRO ASP GLN ILE LYS LYS VAL PHE GLY ILE LEU ASP GLN SEQRES 5 A 108 ASP LYS SER GLY PHE ILE GLU GLU GLU GLU LEU GLN LEU SEQRES 6 A 108 PHE LEU LYS ASN PHE SER SER SER ALA ARG VAL LEU THR SEQRES 7 A 108 SER ALA GLU THR LYS ALA PHE LEU ALA ALA GLY ASP THR SEQRES 8 A 108 ASP GLY ASP GLY LYS ILE GLY VAL GLU GLU PHE GLN SER SEQRES 9 A 108 LEU VAL LYS ALA HELIX 1 1 SER A 7 SER A 16 1 10 HELIX 2 2 GLY A 34 LYS A 38 5 5 HELIX 3 3 ASP A 41 GLY A 48 1 8 HELIX 4 4 GLU A 60 GLN A 64 1 5 HELIX 5 5 LEU A 65 ASN A 69 5 5 HELIX 6 6 ALA A 80 ASP A 90 1 11 HELIX 7 7 VAL A 99 LYS A 107 1 9 SHEET 1 A 2 ILE A 58 GLU A 59 0 SHEET 2 A 2 LYS A 96 ILE A 97 -1 O ILE A 97 N ILE A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1