HEADER LIGASE 27-NOV-09 2KR1 TITLE SOLUTION NMR STRUCTURE OF ZINC BINDING N-TERMINAL DOMAIN OF UBIQUITIN- TITLE 2 PROTEIN LIGASE E3A FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM (NESG) TARGET HR3662 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN PROTEIN LIGASE E3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-64; COMPND 5 SYNONYM: CTCL TUMOR ANTIGEN SE37-2, CDNA FLJ77551, UBIQUITIN PROTEIN COMPND 6 LIGASE E3A ISOFORM CRA_A, UBIQUITIN PROTEIN LIGASE E3A ISOFORM CRA_B, COMPND 7 HUMAN PAPILLOMA VIRUS E6-ASSOCIATED PROTEIN, ANGELMAN SYNDROME; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE3A, HCG_18679; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-MHL KEYWDS LIGASE, UBL CONJUGATION PATHWAY, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, STRUCTURAL GENOMICS CONSORTIUM (SGC) EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,C.FARES,A.SEMESI,R.XIAO,G.MONTELIONE,S.DHE-PAGANON, AUTHOR 2 C.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 26-FEB-20 2KR1 1 REMARK SEQADV REVDAT 4 23-MAY-12 2KR1 1 JRNL REVDAT 3 18-JAN-12 2KR1 1 REMARK VERSN REVDAT 2 04-AUG-10 2KR1 1 JRNL REVDAT 1 22-DEC-09 2KR1 0 JRNL AUTH A.LEMAK,A.YEE,I.BEZSONOVA,S.DHE-PAGANON,C.H.ARROWSMITH JRNL TITL ZN-BINDING AZUL DOMAIN OF HUMAN UBIQUITIN PROTEIN LIGASE JRNL TITL 2 UBE3A. JRNL REF J.BIOMOL.NMR V. 51 185 2011 JRNL REFN ISSN 0925-2738 JRNL PMID 21947926 JRNL DOI 10.1007/S10858-011-9552-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNSSOLVE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000101466. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 450 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] HS00184, REMARK 210 10 MM MOPS, 450 MM SODIUM REMARK 210 CHLORIDE, 10 UM ZNSO4, 10 MM DTT, REMARK 210 0.01 % NAN3, 10 MM BENZAMIDINE, REMARK 210 10 % D2O-8, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C_AROM NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, CYANA REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 27 69.85 -116.53 REMARK 500 1 ARG A 39 108.44 -58.70 REMARK 500 1 LYS A 58 96.53 -69.95 REMARK 500 2 CYS A 21 -1.80 -156.05 REMARK 500 2 ASN A 56 60.99 61.72 REMARK 500 3 ASN A 56 73.64 56.28 REMARK 500 3 ALA A 57 -167.19 -78.74 REMARK 500 3 LYS A 58 95.61 -69.03 REMARK 500 4 CYS A 21 10.17 -150.29 REMARK 500 4 ALA A 25 48.76 -87.34 REMARK 500 4 THR A 27 31.12 -82.95 REMARK 500 5 GLU A 24 -74.85 -57.91 REMARK 500 5 THR A 27 56.33 -92.55 REMARK 500 6 ARG A 3 31.45 -90.44 REMARK 500 6 CYS A 21 2.37 -153.36 REMARK 500 6 THR A 27 59.02 -91.12 REMARK 500 6 MET A 40 -168.90 -105.96 REMARK 500 6 ASN A 56 68.19 62.75 REMARK 500 6 PRO A 62 106.41 -59.24 REMARK 500 7 ASN A 23 105.21 -59.92 REMARK 500 7 PHE A 30 37.48 -88.30 REMARK 500 7 LYS A 58 99.09 -62.08 REMARK 500 8 CYS A 21 8.42 -158.49 REMARK 500 8 ALA A 25 48.76 -106.27 REMARK 500 8 THR A 27 78.47 -114.95 REMARK 500 8 LYS A 58 96.52 -66.53 REMARK 500 9 LYS A 58 95.77 -64.67 REMARK 500 10 CYS A 21 -2.38 -149.15 REMARK 500 10 ALA A 25 46.71 -93.09 REMARK 500 10 THR A 27 42.19 -86.17 REMARK 500 10 PHE A 30 39.14 -88.23 REMARK 500 10 LYS A 58 105.43 -58.44 REMARK 500 10 PRO A 62 109.46 -59.55 REMARK 500 11 CYS A 21 14.70 -158.43 REMARK 500 11 ASN A 23 108.69 -54.33 REMARK 500 11 PHE A 30 49.90 -88.49 REMARK 500 11 LYS A 58 102.35 -59.80 REMARK 500 12 GLU A 19 -62.17 -91.05 REMARK 500 12 CYS A 21 -0.93 -156.81 REMARK 500 12 GLU A 24 -71.68 -60.54 REMARK 500 12 ASP A 61 147.53 71.49 REMARK 500 13 CYS A 21 0.12 -156.45 REMARK 500 13 ALA A 25 45.17 -96.09 REMARK 500 14 ALA A 25 44.73 -87.51 REMARK 500 14 PHE A 30 45.93 -89.63 REMARK 500 15 GLU A 19 -61.64 -91.53 REMARK 500 15 CYS A 21 1.06 -158.92 REMARK 500 15 LYS A 58 95.66 -57.83 REMARK 500 16 CYS A 21 1.30 -154.35 REMARK 500 16 ALA A 25 46.78 -92.31 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 65 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 31 SG 106.9 REMARK 620 3 CYS A 60 SG 109.9 108.1 REMARK 620 4 CYS A 26 SG 110.8 110.4 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 65 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16620 RELATED DB: BMRB REMARK 900 RELATED ID: HR3662A RELATED DB: TARGETDB DBREF 2KR1 A 1 64 UNP Q9H2G0 Q9H2G0_HUMAN 1 64 SEQADV 2KR1 MET A -17 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -16 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -15 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -14 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -13 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -12 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 HIS A -11 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 SER A -10 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 SER A -9 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 GLY A -8 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 ARG A -7 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 GLU A -6 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 ASN A -5 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 LEU A -4 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 TYR A -3 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 PHE A -2 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 GLN A -1 UNP Q9H2G0 EXPRESSION TAG SEQADV 2KR1 GLY A 0 UNP Q9H2G0 EXPRESSION TAG SEQRES 1 A 82 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 82 LEU TYR PHE GLN GLY MET LYS ARG ALA ALA ALA LYS HIS SEQRES 3 A 82 LEU ILE GLU ARG TYR TYR HIS GLN LEU THR GLU GLY CYS SEQRES 4 A 82 GLY ASN GLU ALA CYS THR ASN GLU PHE CYS ALA SER CYS SEQRES 5 A 82 PRO THR PHE LEU ARG MET ASP ASN ASN ALA ALA ALA ILE SEQRES 6 A 82 LYS ALA LEU GLU LEU TYR LYS ILE ASN ALA LYS LEU CYS SEQRES 7 A 82 ASP PRO HIS PRO HET ZN A 65 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ARG A 3 GLU A 19 1 17 HELIX 2 2 ASP A 41 ASN A 56 1 16 SSBOND 1 CYS A 26 CYS A 34 1555 1555 2.97 LINK SG CYS A 21 ZN ZN A 65 1555 1555 2.33 LINK SG CYS A 31 ZN ZN A 65 1555 1555 2.33 LINK SG CYS A 60 ZN ZN A 65 1555 1555 2.34 LINK SG CYS A 26 ZN ZN A 65 1555 1555 2.37 SITE 1 AC1 4 CYS A 21 CYS A 26 CYS A 31 CYS A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1