data_2KR7 # _entry.id 2KR7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KR7 RCSB RCSB101472 WWPDB D_1000101472 # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KR7 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-12-07 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cheng, T.' 1 'Li, H.' 2 'Xia, W.' 3 'Sze, K.' 4 'Sun, H.' 5 # _citation.id primary _citation.title 'solution structure of Helicobacter pylori SlyD' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cheng, T.' 1 primary 'Li, H.' 2 primary 'Xia, W.' 3 primary 'Sze, K.' 4 primary 'Sun, H.' 5 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'FKBP-type peptidyl-prolyl cis-trans isomerase slyD' _entity.formula_weight 17039.033 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.2.1.8 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 1-151' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PPIase, Rotamase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSY LQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVSEEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MQNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSY LQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVSEEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ASN n 1 4 HIS n 1 5 ASP n 1 6 LEU n 1 7 GLU n 1 8 SER n 1 9 ILE n 1 10 LYS n 1 11 GLN n 1 12 ALA n 1 13 ALA n 1 14 LEU n 1 15 ILE n 1 16 GLU n 1 17 TYR n 1 18 GLU n 1 19 VAL n 1 20 ARG n 1 21 GLU n 1 22 GLN n 1 23 GLY n 1 24 SER n 1 25 SER n 1 26 ILE n 1 27 VAL n 1 28 LEU n 1 29 ASP n 1 30 SER n 1 31 ASN n 1 32 ILE n 1 33 SER n 1 34 LYS n 1 35 GLU n 1 36 PRO n 1 37 LEU n 1 38 GLU n 1 39 PHE n 1 40 ILE n 1 41 ILE n 1 42 GLY n 1 43 THR n 1 44 ASN n 1 45 GLN n 1 46 ILE n 1 47 ILE n 1 48 ALA n 1 49 GLY n 1 50 LEU n 1 51 GLU n 1 52 LYS n 1 53 ALA n 1 54 VAL n 1 55 LEU n 1 56 LYS n 1 57 ALA n 1 58 GLN n 1 59 ILE n 1 60 GLY n 1 61 GLU n 1 62 TRP n 1 63 GLU n 1 64 GLU n 1 65 VAL n 1 66 VAL n 1 67 ILE n 1 68 ALA n 1 69 PRO n 1 70 GLU n 1 71 GLU n 1 72 ALA n 1 73 TYR n 1 74 GLY n 1 75 VAL n 1 76 TYR n 1 77 GLU n 1 78 SER n 1 79 SER n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 GLU n 1 84 VAL n 1 85 PRO n 1 86 ARG n 1 87 ASP n 1 88 GLN n 1 89 PHE n 1 90 GLU n 1 91 GLY n 1 92 ILE n 1 93 GLU n 1 94 LEU n 1 95 GLU n 1 96 LYS n 1 97 GLY n 1 98 MET n 1 99 SER n 1 100 VAL n 1 101 PHE n 1 102 GLY n 1 103 GLN n 1 104 THR n 1 105 GLU n 1 106 ASP n 1 107 ASN n 1 108 GLN n 1 109 THR n 1 110 ILE n 1 111 GLN n 1 112 ALA n 1 113 ILE n 1 114 ILE n 1 115 LYS n 1 116 ASP n 1 117 PHE n 1 118 SER n 1 119 ALA n 1 120 THR n 1 121 HIS n 1 122 VAL n 1 123 MET n 1 124 VAL n 1 125 ASP n 1 126 TYR n 1 127 ASN n 1 128 HIS n 1 129 PRO n 1 130 LEU n 1 131 ALA n 1 132 GLY n 1 133 LYS n 1 134 THR n 1 135 LEU n 1 136 ALA n 1 137 PHE n 1 138 ARG n 1 139 PHE n 1 140 LYS n 1 141 VAL n 1 142 LEU n 1 143 GLY n 1 144 PHE n 1 145 ARG n 1 146 GLU n 1 147 VAL n 1 148 SER n 1 149 GLU n 1 150 GLU n 1 151 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'slyD, HP_1123' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 26695 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET-32a(+)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SLYD_HELPY _struct_ref.pdbx_db_accession O25748 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSY LQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVSEEE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KR7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 151 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O25748 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCO' 1 6 1 '3D HN(CA)CO' 1 7 1 '3D C(CO)NH' 1 8 1 '3D H(CCO)NH' 1 9 1 '3D HNCA' 1 10 2 '3D HCCH-TOCSY' 1 11 2 '3D HCCH-COSY' 1 12 1 '3D HBHA(CO)NH' 1 13 1 '3D HNHA' 1 14 1 '3D HN(CO)CA' 1 15 1 '3D 1H-15N NOESY' 1 16 2 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-1, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1-1.5 mM [U-100% 13C; U-100% 15N] SlyD-2, 100% D2O' 2 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KR7 _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KR7 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 4 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KR7 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA,_AMBER ? 1 'Guntert, Mumenthaler and Wuthrich' refinement CYANA,_AMBER ? 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' CYANA,_AMBER ? 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement CYANA,_AMBER ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KR7 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KR7 _struct.title 'solution structure of Helicobacter pylori SlyD' _struct.pdbx_descriptor 'FKBP-type peptidyl-prolyl cis-trans isomerase slyD (E.C.5.2.1.8)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KR7 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'protein, Isomerase, Rotamase' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 47 ? LEU A 55 ? ILE A 47 LEU A 55 1 ? 9 HELX_P HELX_P2 2 ASP A 87 ? GLU A 90 ? ASP A 87 GLU A 90 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 27 ? SER A 30 ? VAL A 27 SER A 30 A 2 ALA A 12 ? GLU A 21 ? ALA A 12 GLU A 21 A 3 LEU A 37 ? ILE A 40 ? LEU A 37 ILE A 40 B 1 VAL A 27 ? SER A 30 ? VAL A 27 SER A 30 B 2 ALA A 12 ? GLU A 21 ? ALA A 12 GLU A 21 B 3 LEU A 135 ? ARG A 145 ? LEU A 135 ARG A 145 B 4 TRP A 62 ? ILE A 67 ? TRP A 62 ILE A 67 C 1 TYR A 80 ? PRO A 85 ? TYR A 80 PRO A 85 C 2 HIS A 121 ? TYR A 126 ? HIS A 121 TYR A 126 C 3 GLN A 108 ? PHE A 117 ? GLN A 108 PHE A 117 C 4 SER A 99 ? THR A 104 ? SER A 99 THR A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 29 ? O ASP A 29 N VAL A 19 ? N VAL A 19 A 2 3 N ALA A 13 ? N ALA A 13 O PHE A 39 ? O PHE A 39 B 1 2 O ASP A 29 ? O ASP A 29 N VAL A 19 ? N VAL A 19 B 2 3 N GLU A 18 ? N GLU A 18 O ARG A 138 ? O ARG A 138 B 3 4 O PHE A 139 ? O PHE A 139 N GLU A 63 ? N GLU A 63 C 1 2 N VAL A 84 ? N VAL A 84 O VAL A 122 ? O VAL A 122 C 2 3 O MET A 123 ? O MET A 123 N ASP A 116 ? N ASP A 116 C 3 4 O ALA A 112 ? O ALA A 112 N VAL A 100 ? N VAL A 100 # _atom_sites.entry_id 2KR7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLU 151 151 151 GLU GLU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id SlyD-1 ? 1-1.5 mM '[U-100% 13C; U-100% 15N]' 1 SlyD-2 ? 1-1.5 mM '[U-100% 13C; U-100% 15N]' 2 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 9 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 20 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 20 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 20 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.34 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.04 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 34 ? ? -78.09 -72.97 2 1 ILE A 41 ? ? -47.86 109.75 3 1 ASP A 106 ? ? -75.08 20.41 4 1 ALA A 131 ? ? -67.76 -176.33 5 1 GLU A 149 ? ? -90.94 55.48 6 1 GLU A 150 ? ? -138.19 -73.19 7 2 SER A 8 ? ? -69.36 8.27 8 2 LYS A 34 ? ? -107.87 -73.32 9 2 ILE A 41 ? ? -56.69 104.58 10 2 ASP A 87 ? ? -133.30 -36.43 11 2 LEU A 130 ? ? -111.31 77.07 12 3 HIS A 4 ? ? -74.26 -83.96 13 3 LYS A 34 ? ? -79.48 -74.02 14 3 THR A 43 ? ? -131.05 -37.79 15 3 GLU A 71 ? ? -147.04 -56.66 16 3 TYR A 73 ? ? 42.51 70.85 17 3 SER A 79 ? ? -145.14 52.51 18 3 ARG A 86 ? ? -69.73 10.76 19 3 LYS A 96 ? ? -66.99 90.48 20 3 ASP A 106 ? ? -69.30 13.21 21 3 LEU A 130 ? ? -104.40 76.78 22 4 LYS A 34 ? ? -107.47 -73.58 23 4 ILE A 41 ? ? -50.70 106.09 24 4 ASP A 87 ? ? -130.63 -50.52 25 4 GLU A 149 ? ? -84.49 -71.75 26 5 LYS A 34 ? ? -78.59 -72.47 27 5 ILE A 41 ? ? -46.37 106.74 28 5 ALA A 72 ? ? -72.33 -70.57 29 5 SER A 79 ? ? -108.41 79.26 30 5 GLU A 90 ? ? 21.28 66.97 31 5 LYS A 96 ? ? -71.81 21.94 32 5 HIS A 128 ? ? 48.46 83.77 33 6 ILE A 41 ? ? -50.73 107.69 34 6 ALA A 72 ? ? -132.35 -67.53 35 6 ASP A 87 ? ? -132.38 -50.36 36 7 GLU A 7 ? ? -75.97 20.84 37 7 GLN A 22 ? ? -67.60 93.45 38 7 LYS A 34 ? ? -92.01 -72.17 39 7 ILE A 41 ? ? -47.57 109.30 40 7 ALA A 72 ? ? -125.51 -67.45 41 7 TYR A 80 ? ? 56.55 8.03 42 7 ALA A 131 ? ? -67.50 96.49 43 8 GLU A 7 ? ? -102.08 52.72 44 8 SER A 8 ? ? -69.70 2.46 45 8 LYS A 34 ? ? -104.27 -75.80 46 8 THR A 43 ? ? -134.27 -49.61 47 8 ASP A 87 ? ? -132.42 -50.14 48 9 LYS A 34 ? ? -117.59 -87.97 49 9 ILE A 41 ? ? -54.85 109.22 50 9 LYS A 52 ? ? -68.03 0.24 51 9 VAL A 75 ? ? -50.97 96.46 52 9 SER A 79 ? ? -69.15 -173.60 53 9 GLU A 90 ? ? -53.34 108.61 54 9 ASP A 106 ? ? -69.19 10.71 55 9 ASN A 127 ? ? -71.75 37.34 56 9 LEU A 130 ? ? -78.99 46.00 57 10 LEU A 6 ? ? -69.81 98.73 58 10 LYS A 34 ? ? -69.64 -71.61 59 10 THR A 43 ? ? -134.60 -43.90 60 10 PRO A 69 ? ? -74.28 42.41 61 10 ARG A 86 ? ? -69.50 70.26 62 10 ASP A 87 ? ? -129.19 -64.39 63 11 ILE A 41 ? ? -48.19 105.03 64 11 ALA A 72 ? ? -100.31 -73.39 65 11 TYR A 73 ? ? -141.94 -12.32 66 12 LYS A 34 ? ? -100.85 -83.61 67 12 LYS A 52 ? ? -69.04 1.72 68 12 ALA A 72 ? ? -78.67 -168.30 69 12 ASP A 87 ? ? -122.38 -54.11 70 12 ALA A 112 ? ? -161.41 -167.97 71 13 GLU A 7 ? ? 56.53 19.25 72 13 LYS A 34 ? ? -107.93 -88.07 73 13 ILE A 41 ? ? -49.41 106.98 74 13 THR A 43 ? ? -132.61 -49.10 75 13 GLU A 90 ? ? -59.94 104.28 76 13 THR A 120 ? ? -140.25 -17.93 77 14 ILE A 41 ? ? -55.57 106.16 78 14 TYR A 73 ? ? -143.51 -37.55 79 15 GLN A 2 ? ? -141.59 -63.49 80 15 LYS A 52 ? ? -67.05 0.30 81 15 TYR A 73 ? ? 39.90 74.01 82 15 VAL A 75 ? ? -119.53 61.35 83 15 SER A 148 ? ? 67.87 98.34 84 15 GLU A 150 ? ? 58.95 13.61 85 16 SER A 25 ? ? -76.59 31.55 86 16 ALA A 72 ? ? -133.30 -67.80 87 16 GLU A 77 ? ? -106.42 47.01 88 16 GLU A 90 ? ? -54.62 107.93 89 16 LYS A 96 ? ? -73.96 25.69 90 17 ASN A 3 ? ? -100.87 -63.57 91 17 GLU A 7 ? ? -114.08 63.85 92 17 ILE A 41 ? ? -48.14 109.61 93 17 THR A 43 ? ? -146.35 -33.47 94 17 ALA A 72 ? ? -131.30 -82.59 95 17 VAL A 75 ? ? -116.20 75.44 96 18 GLU A 7 ? ? -96.13 32.06 97 18 LYS A 10 ? ? -52.77 101.19 98 18 LYS A 34 ? ? -86.93 -73.93 99 18 ILE A 41 ? ? -49.80 109.43 100 18 ALA A 72 ? ? -86.33 -72.60 101 18 TYR A 73 ? ? -142.28 -22.21 102 18 SER A 78 ? ? -70.11 29.84 103 18 SER A 79 ? ? -64.74 -166.58 104 18 ARG A 86 ? ? -67.21 0.53 105 18 GLU A 90 ? ? -56.49 99.06 106 18 GLU A 150 ? ? -130.00 -61.08 107 19 GLU A 7 ? ? -113.26 65.43 108 19 GLN A 22 ? ? -59.53 106.27 109 19 SER A 25 ? ? -66.43 18.35 110 19 LYS A 34 ? ? -85.81 -74.40 111 19 THR A 43 ? ? -140.04 -33.76 112 19 TYR A 73 ? ? 43.02 76.06 113 19 ARG A 86 ? ? -69.46 21.19 114 19 GLU A 90 ? ? -57.29 105.43 115 19 GLU A 150 ? ? -139.82 -58.52 116 20 LYS A 34 ? ? -74.50 -72.94 117 20 GLU A 35 ? ? -169.70 118.65 #