HEADER CONTRACTILE PROTEIN 14-DEC-09 2KRA TITLE SOLUTION STRUCTURE OF BV8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROKINETICIN BV8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBINA VARIEGATA; SOURCE 3 ORGANISM_COMMON: YELLOW-BELLIED TOAD; SOURCE 4 ORGANISM_TAXID: 8348; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA STRANDS, BETA TURN, HELIX, DISULFIDE BOND, SECRETED, CONTRACTILE KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.L.DALY,D.J.CRAIK,M.MOBLI REVDAT 2 23-APR-14 2KRA 1 JRNL VERSN REVDAT 1 11-AUG-10 2KRA 0 JRNL AUTH R.A.V.MORALES,N.L.DALY,I.VETTER,M.MOBLI,I.A.NAPIER, JRNL AUTH 2 D.J.CRAIK,R.J.LEWIS,M.J.CHRISTIE,G.F.KING,P.F.ALEWOOD, JRNL AUTH 3 T.DUREK JRNL TITL CHEMICAL SYNTHESIS AND STRUCTURE OF THE PROKINETICIN BV8 JRNL REF CHEMBIOCHEM V. 11 1882 2010 JRNL REFN ISSN 1439-4227 JRNL PMID 20677202 JRNL DOI 10.1002/CBIC.201000330 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB101475. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM BV8, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNSSOLVE, CYANA, TOPSPIN, XEASY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 8 HZ2 LYS A 9 1.54 REMARK 500 OD2 ASP A 40 HZ2 LYS A 75 1.58 REMARK 500 HZ1 LYS A 47 OD1 ASP A 51 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 26.51 -140.18 REMARK 500 1 ASP A 8 -40.45 -141.72 REMARK 500 1 CYS A 13 -119.09 -93.49 REMARK 500 1 CYS A 19 38.58 -91.51 REMARK 500 1 ARG A 26 5.34 -69.85 REMARK 500 1 ARG A 29 46.08 -140.64 REMARK 500 1 ASN A 36 -168.13 -102.46 REMARK 500 1 SER A 57 32.35 -89.92 REMARK 500 1 PRO A 60 -168.34 -67.59 REMARK 500 2 THR A 4 31.76 -150.70 REMARK 500 2 SER A 15 107.92 -52.95 REMARK 500 2 ARG A 26 35.29 -80.31 REMARK 500 2 ARG A 29 57.17 -150.93 REMARK 500 2 CYS A 31 98.16 -58.47 REMARK 500 2 SER A 57 34.76 -88.00 REMARK 500 2 PRO A 60 -166.15 -72.92 REMARK 500 2 LYS A 73 -158.64 -110.98 REMARK 500 3 THR A 4 -38.33 -151.93 REMARK 500 3 CYS A 7 -159.92 -150.97 REMARK 500 3 ASP A 8 -53.31 -153.15 REMARK 500 3 SER A 15 108.66 -49.49 REMARK 500 3 ARG A 26 48.36 -78.09 REMARK 500 3 ARG A 29 55.67 -148.60 REMARK 500 3 CYS A 31 98.31 -57.60 REMARK 500 3 SER A 57 46.04 -87.69 REMARK 500 3 PRO A 60 -178.31 -65.57 REMARK 500 3 GLU A 72 -43.67 -150.11 REMARK 500 4 THR A 4 29.26 -150.08 REMARK 500 4 CYS A 13 -139.61 -89.42 REMARK 500 4 CYS A 19 45.19 -89.67 REMARK 500 4 ARG A 26 38.84 -80.14 REMARK 500 4 CYS A 31 102.80 -58.76 REMARK 500 4 HIS A 46 -150.31 -112.88 REMARK 500 4 LEU A 55 32.75 -89.23 REMARK 500 4 SER A 57 30.21 -88.02 REMARK 500 4 GLU A 72 -49.46 -135.58 REMARK 500 5 THR A 4 -30.21 -151.24 REMARK 500 5 SER A 15 108.90 -52.14 REMARK 500 5 ARG A 26 37.87 -77.22 REMARK 500 5 ARG A 29 53.74 -145.99 REMARK 500 5 CYS A 31 77.30 -61.56 REMARK 500 5 ALA A 44 30.62 -84.41 REMARK 500 5 SER A 57 30.51 -89.25 REMARK 500 5 LYS A 73 -167.29 -121.42 REMARK 500 6 THR A 4 15.54 -151.73 REMARK 500 6 SER A 15 100.34 -53.66 REMARK 500 6 CYS A 19 31.83 -89.83 REMARK 500 6 ARG A 29 43.80 -140.52 REMARK 500 6 CYS A 31 79.64 -68.64 REMARK 500 6 HIS A 46 -142.21 -119.58 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KRA A 1 77 UNP Q9PW66 BV8_BOMVA 20 96 SEQRES 1 A 77 ALA VAL ILE THR GLY ALA CYS ASP LYS ASP VAL GLN CYS SEQRES 2 A 77 GLY SER GLY THR CYS CYS ALA ALA SER ALA TRP SER ARG SEQRES 3 A 77 ASN ILE ARG PHE CYS ILE PRO LEU GLY ASN SER GLY GLU SEQRES 4 A 77 ASP CYS HIS PRO ALA SER HIS LYS VAL PRO TYR ASP GLY SEQRES 5 A 77 LYS ARG LEU SER SER LEU CYS PRO CYS LYS SER GLY LEU SEQRES 6 A 77 THR CYS SER LYS SER GLY GLU LYS PHE LYS CYS SER HELIX 1 1 LYS A 9 CYS A 13 5 5 SHEET 1 A 2 THR A 17 CYS A 18 0 SHEET 2 A 2 ILE A 32 PRO A 33 -1 O ILE A 32 N CYS A 18 SHEET 1 B 3 ASP A 40 CYS A 41 0 SHEET 2 B 3 PHE A 74 CYS A 76 -1 O PHE A 74 N CYS A 41 SHEET 3 B 3 CYS A 67 LYS A 69 -1 N SER A 68 O LYS A 75 SSBOND 1 CYS A 7 CYS A 19 1555 1555 2.03 SSBOND 2 CYS A 13 CYS A 31 1555 1555 2.03 SSBOND 3 CYS A 18 CYS A 59 1555 1555 2.03 SSBOND 4 CYS A 41 CYS A 67 1555 1555 2.03 SSBOND 5 CYS A 61 CYS A 76 1555 1555 2.03 CISPEP 1 VAL A 48 PRO A 49 1 0.73 CISPEP 2 VAL A 48 PRO A 49 2 1.47 CISPEP 3 VAL A 48 PRO A 49 3 1.98 CISPEP 4 VAL A 48 PRO A 49 4 1.27 CISPEP 5 VAL A 48 PRO A 49 5 0.82 CISPEP 6 VAL A 48 PRO A 49 6 0.91 CISPEP 7 VAL A 48 PRO A 49 7 1.11 CISPEP 8 VAL A 48 PRO A 49 8 1.18 CISPEP 9 VAL A 48 PRO A 49 9 1.24 CISPEP 10 VAL A 48 PRO A 49 10 0.16 CISPEP 11 VAL A 48 PRO A 49 11 1.50 CISPEP 12 VAL A 48 PRO A 49 12 0.58 CISPEP 13 VAL A 48 PRO A 49 13 1.23 CISPEP 14 VAL A 48 PRO A 49 14 0.57 CISPEP 15 VAL A 48 PRO A 49 15 1.27 CISPEP 16 VAL A 48 PRO A 49 16 1.45 CISPEP 17 VAL A 48 PRO A 49 17 0.99 CISPEP 18 VAL A 48 PRO A 49 18 0.40 CISPEP 19 VAL A 48 PRO A 49 19 1.08 CISPEP 20 VAL A 48 PRO A 49 20 -0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1