HEADER HYDROLASE 18-DEC-09 2KRJ TITLE HIGH-RESOLUTION SOLID-STATE NMR STRUCTURE OF A 17.6 KDA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 112-263; COMPND 5 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, MACROPHAGE COMPND 6 ELASTASE, ME; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS CALCIUM, EXTRACELLULAR MATRIX, GLYCOPROTEIN, HYDROLASE, METAL- KEYWDS 2 BINDING, METALLOPROTEASE, POLYMORPHISM, PROTEASE, SECRETED, ZINC, KEYWDS 3 ZYMOGEN EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR I.BERTINI,A.BHAUMIK,G.DE PA PE,R.G.GRIFFIN,M.LELLI,J.R.LEWANDOWSKI, AUTHOR 2 C.LUCHINAT REVDAT 3 20-NOV-19 2KRJ 1 REMARK SEQADV LINK REVDAT 2 12-MAY-10 2KRJ 1 JRNL REVDAT 1 23-FEB-10 2KRJ 0 JRNL AUTH I.BERTINI,A.BHAUMIK,G.DE PAEPE,R.G.GRIFFIN,M.LELLI, JRNL AUTH 2 J.R.LEWANDOWSKI,C.LUCHINAT JRNL TITL HIGH-RESOLUTION SOLID-STATE NMR STRUCTURE OF A 17.6 KDA JRNL TITL 2 PROTEIN. JRNL REF J.AM.CHEM.SOC. V. 132 1032 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20041641 JRNL DOI 10.1021/JA906426P REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000101484. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 270 REMARK 210 PH : 8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 45 MG/ML [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, PEG REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PDSD; CHHC; DARR; PAIN; PAR REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF REMARK 210 DISTANCE RESTRAINS COLLECTED FROM DIFFERENT EXPERIMENTS DATA, REMARK 210 TALOS ANGLE RESTRAINTS AND PSEUDO CONTACT SHIFTS DATA. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 HIS A 218 CO CO A 264 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 117 117.77 -161.90 REMARK 500 1 ASN A 119 60.50 -168.99 REMARK 500 1 PRO A 123 -178.53 -69.79 REMARK 500 1 LEU A 147 175.89 -54.63 REMARK 500 1 LYS A 148 -169.03 -118.23 REMARK 500 1 SER A 150 89.48 -156.86 REMARK 500 1 HIS A 168 41.95 -92.49 REMARK 500 1 ASP A 170 28.76 -145.11 REMARK 500 1 ASP A 171 -169.55 -107.08 REMARK 500 1 PHE A 174 -82.94 -120.80 REMARK 500 1 ASP A 175 -170.13 173.97 REMARK 500 1 ALA A 182 123.95 -179.09 REMARK 500 1 PRO A 187 -169.37 -69.74 REMARK 500 1 GLU A 201 -171.99 -59.27 REMARK 500 1 THR A 205 -171.17 -69.62 REMARK 500 1 THR A 210 99.55 -60.19 REMARK 500 1 SER A 223 30.38 -98.79 REMARK 500 1 LEU A 224 -61.65 -136.38 REMARK 500 1 HIS A 228 40.73 -178.76 REMARK 500 1 SER A 229 -71.51 -179.53 REMARK 500 1 SER A 230 -79.14 65.56 REMARK 500 1 PRO A 238 76.57 -69.79 REMARK 500 1 ALA A 252 176.11 65.13 REMARK 500 1 LEU A 261 93.12 57.70 REMARK 500 1 TYR A 262 -52.63 -137.37 REMARK 500 2 ASN A 119 -75.02 -115.76 REMARK 500 2 PRO A 146 -87.84 -69.81 REMARK 500 2 LEU A 147 -175.83 53.18 REMARK 500 2 SER A 150 89.62 -156.77 REMARK 500 2 HIS A 168 41.39 -95.10 REMARK 500 2 ASP A 170 61.10 -179.23 REMARK 500 2 ALA A 182 132.57 -178.77 REMARK 500 2 PRO A 187 -171.18 -69.70 REMARK 500 2 ASP A 198 99.99 59.51 REMARK 500 2 PHE A 202 153.58 65.09 REMARK 500 2 LEU A 224 -64.75 -135.43 REMARK 500 2 LEU A 226 -74.60 -145.23 REMARK 500 2 SER A 229 -80.67 -99.14 REMARK 500 2 SER A 230 -38.32 174.19 REMARK 500 2 ASP A 231 107.41 -47.41 REMARK 500 2 PHE A 237 160.09 -49.00 REMARK 500 2 ARG A 249 147.73 179.98 REMARK 500 2 ALA A 252 -171.69 67.11 REMARK 500 3 ASN A 119 -71.36 -102.68 REMARK 500 3 LEU A 147 161.01 -49.86 REMARK 500 3 LYS A 151 103.93 -58.63 REMARK 500 3 ASN A 153 41.71 -102.52 REMARK 500 3 ASP A 170 -74.81 -80.27 REMARK 500 3 ASP A 171 33.95 -178.68 REMARK 500 3 PHE A 174 174.48 -54.93 REMARK 500 REMARK 500 THIS ENTRY HAS 372 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 264 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 76.0 REMARK 620 3 HIS A 228 NE2 120.5 89.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K9C RELATED DB: PDB DBREF 2KRJ A 112 263 UNP P39900 MMP12_HUMAN 112 263 SEQADV 2KRJ ASP A 171 UNP P39900 PHE 171 CONFLICT SEQRES 1 A 152 HIS TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO ASP SEQRES 2 A 152 MET ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS ALA SEQRES 3 A 152 PHE GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SER SEQRES 4 A 152 LYS ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL PHE SEQRES 5 A 152 ALA ARG GLY ALA HIS GLY ASP ASP HIS ALA PHE ASP GLY SEQRES 6 A 152 LYS GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SER SEQRES 7 A 152 GLY ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU PHE SEQRES 8 A 152 TRP THR THR HIS SER GLY GLY THR ASN LEU PHE LEU THR SEQRES 9 A 152 ALA VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY HIS SEQRES 10 A 152 SER SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR LYS SEQRES 11 A 152 TYR VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP ASP SEQRES 12 A 152 ILE ARG GLY ILE GLN SER LEU TYR GLY HET CO A 264 1 HETNAM CO COBALT (II) ION FORMUL 2 CO CO 2+ HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 LEU A 212 SER A 223 1 12 HELIX 3 3 ASP A 253 SER A 260 1 8 SHEET 1 A 2 LEU A 160 ALA A 164 0 SHEET 2 A 2 ASP A 194 ASP A 198 1 O PHE A 197 N ALA A 164 SHEET 1 B 2 TRP A 203 THR A 204 0 SHEET 2 B 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 LINK NE2 HIS A 218 CO CO A 264 1555 1555 2.72 LINK NE2 HIS A 222 CO CO A 264 1555 1555 2.08 LINK NE2 HIS A 228 CO CO A 264 1555 1555 2.57 SITE 1 AC1 3 HIS A 218 HIS A 222 HIS A 228 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1