HEADER RNA 23-DEC-09 2KRY TITLE SOLUTION STRUCTURE OF THE HUMAN MITOCHONDRIAL TRNAMET ASL CONTAINING TITLE 2 THE 5-FORMYLCYTIDINE MODIFICATION IN POSITION 34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ) COMPND 3 P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA, TRNA, 5-FORMYLCYTIDINE, ASL, MODIFICATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.BILBILLE,P.F.AGRIS REVDAT 3 01-MAY-24 2KRY 1 REMARK LINK REVDAT 2 17-FEB-16 2KRY 1 MODRES VERSN REVDAT 1 18-AUG-10 2KRY 0 JRNL AUTH Y.BILBILLE,K.HARRIS,P.F.AGRIS JRNL TITL THE HUMAN MITOCHONDRIAL TRNAMET ASL STRUCTURE SOLVED BY JRNL TITL 2 NUCLEAR MAGNETIC RESONANCE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS 1.21 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101499. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM RNA (5' REMARK 210 -R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3' REMARK 210 )-1, 90% H2O/10% D2O; 1 MM RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP* REMARK 210 (RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D DQF-COSY; 2D REMARK 210 1H-1H COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-13C HSQC; 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRDRAW, NMRPIPE, REMARK 210 SPARKY, CNS 1.21, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16655 RELATED DB: BMRB REMARK 900 RELATED ID: 2KRZ RELATED DB: PDB REMARK 900 RELATED ID: 2KRW RELATED DB: PDB REMARK 900 RELATED ID: 2KRV RELATED DB: PDB REMARK 900 RELATED ID: 2KRQ RELATED DB: PDB REMARK 900 RELATED ID: 2KRP RELATED DB: PDB DBREF 2KRY A 1 17 PDB 2KRY 2KRY 1 17 SEQRES 1 A 17 PSU C G G G C C RSQ A U A C C SEQRES 2 A 17 C C G A MODRES 2KRY PSU A 1 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 2KRY RSQ A 8 C HET PSU A 1 27 HET RSQ A 8 33 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM RSQ 5-FORMYLCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) FORMUL 1 PSU C9 H13 N2 O9 P FORMUL 1 RSQ C10 H14 N3 O9 P LINK O3' PSU A 1 P C A 2 1555 1555 1.61 LINK O3' C A 7 P RSQ A 8 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N1 PSU A 1 -5.943 0.351 7.538 1.00 0.00 N HETATM 2 C2 PSU A 1 -6.229 1.683 7.753 1.00 0.00 C HETATM 3 N3 PSU A 1 -7.479 2.077 7.356 1.00 0.00 N HETATM 4 C4 PSU A 1 -8.453 1.294 6.782 1.00 0.00 C HETATM 5 C5 PSU A 1 -8.083 -0.077 6.593 1.00 0.00 C HETATM 6 C6 PSU A 1 -6.867 -0.495 6.968 1.00 0.00 C HETATM 7 O2 PSU A 1 -5.444 2.450 8.276 1.00 0.00 O HETATM 8 O4 PSU A 1 -9.533 1.802 6.484 1.00 0.00 O HETATM 9 C1' PSU A 1 -9.063 -0.983 5.989 1.00 0.00 C HETATM 10 C2' PSU A 1 -9.262 -0.774 4.486 1.00 0.00 C HETATM 11 O2' PSU A 1 -10.601 -1.095 4.160 1.00 0.00 O HETATM 12 C3' PSU A 1 -8.293 -1.799 3.906 1.00 0.00 C HETATM 13 C4' PSU A 1 -8.399 -2.953 4.894 1.00 0.00 C HETATM 14 O3' PSU A 1 -8.657 -2.214 2.592 1.00 0.00 O HETATM 15 O4' PSU A 1 -8.617 -2.314 6.181 1.00 0.00 O HETATM 16 C5' PSU A 1 -7.179 -3.842 4.986 1.00 0.00 C HETATM 17 O5' PSU A 1 -6.016 -3.081 5.329 1.00 0.00 O HETATM 18 HN1 PSU A 1 -5.037 0.000 7.809 1.00 0.00 H HETATM 19 HN3 PSU A 1 -7.708 3.047 7.505 1.00 0.00 H HETATM 20 H6 PSU A 1 -6.601 -1.542 6.821 1.00 0.00 H HETATM 21 H1' PSU A 1 -9.998 -0.880 6.541 1.00 0.00 H HETATM 22 H2' PSU A 1 -8.985 0.236 4.180 1.00 0.00 H HETATM 23 HO2' PSU A 1 -10.568 -1.653 3.382 1.00 0.00 H HETATM 24 H3' PSU A 1 -7.275 -1.421 3.836 1.00 0.00 H HETATM 25 H4' PSU A 1 -9.235 -3.572 4.568 1.00 0.00 H HETATM 26 H5' PSU A 1 -7.352 -4.606 5.746 1.00 0.00 H HETATM 27 H5'' PSU A 1 -7.029 -4.330 4.023 1.00 0.00 H