HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-09 2KS0 TITLE SOLUTION NMR STRUCTURE OF THE Q251Q8_DESHY(21-82) PROTEIN FROM TITLE 2 DESULFITOBACTERIUM HAFNIENSE, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET DHR8C COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 20-82; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 138119; SOURCE 4 STRAIN: Y51; SOURCE 5 GENE: DSY0195; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS YABP FAMILY, DESULFITOBACTERIUM HAFNIENSE, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,E.L.FOOTE,M.JIANG, AUTHOR 2 H.JANJUA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2KS0 1 REMARK REVDAT 3 26-FEB-20 2KS0 1 REMARK SEQADV REVDAT 2 13-JUL-11 2KS0 1 JRNL REVDAT 1 12-JAN-10 2KS0 0 JRNL AUTH Y.YANG,T.A.RAMELOT,R.M.MCCARRICK,S.NI,E.A.FELDMANN,J.R.CORT, JRNL AUTH 2 H.WANG,C.CICCOSANTI,M.JIANG,H.JANJUA,T.B.ACTON,R.XIAO, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL COMBINING NMR AND EPR METHODS FOR HOMODIMER PROTEIN JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF J.AM.CHEM.SOC. V. 132 11910 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20698532 JRNL DOI 10.1021/JA105080H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2, PSVS 1.4 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH-2.20 WITH HBDB REMARK 4 REMARK 4 2KS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101501. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 Q251Q8_DESHY(21-82) PROTEIN FROM REMARK 210 DESULFITOBACTERIUM HAFNIENSE, 20 REMARK 210 MM AMMONIUM ACETATE, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 1 REMARK 210 MM [U-5% 13C; U-100% 15N] Q251Q8_ REMARK 210 DESHY(21-82) PROTEIN FROM REMARK 210 DESULFITOBACTERIUM HAFNIENSE, 20 REMARK 210 MM AMMONIUM ACETATE, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 Q251Q8_DESHY(21-82) PROTEIN FROM REMARK 210 DESULFITOBACTERIUM HAFNIENSE, 20 REMARK 210 MM AMMONIUM ACETATE, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 100% D2O; 1.0 MM REMARK 210 [U-100% 13C; U-100% 15N] MIXED REMARK 210 WITH LB SAMPLE IN 1:1 RATIO REMARK 210 Q251Q8_DESHY(21-82) PROTEIN FROM REMARK 210 DESULFITOBACTERIUM HAFNIENSE, 20 REMARK 210 MM AMMONIUM ACETATE, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC_CT; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HN(CO)CA; 3D HBHA(CO)NH; REMARK 210 3D H(CCO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 4D CC NOESY; REMARK 210 3D EDITED/FILTERED CNOESY; 2D REMARK 210 1H-15N HSQC_HISTIDINE; 2D 1H-15N REMARK 210 HSQC_SWN150PPM REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, AUTOASSIGN REMARK 210 2.30, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ILE A 41 REMARK 465 LYS A 42 REMARK 465 HIS A 43 REMARK 465 LEU A 44 REMARK 465 ASP A 45 REMARK 465 ILE B 41 REMARK 465 LYS B 42 REMARK 465 HIS B 43 REMARK 465 LEU B 44 REMARK 465 ASP B 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 28 -80.00 50.46 REMARK 500 1 GLN A 29 -18.19 -153.45 REMARK 500 1 LYS A 47 152.62 55.93 REMARK 500 1 ALA A 48 -4.04 57.52 REMARK 500 1 LEU A 64 49.76 -103.59 REMARK 500 1 GLU A 65 84.50 -51.11 REMARK 500 1 HIS A 66 -30.39 -175.98 REMARK 500 1 HIS A 69 151.85 57.38 REMARK 500 1 ASP B 2 -176.63 60.11 REMARK 500 1 GLU B 22 137.94 -170.46 REMARK 500 1 ILE B 28 157.60 -34.31 REMARK 500 1 GLN B 29 -57.76 64.94 REMARK 500 1 LYS B 47 -161.92 -108.59 REMARK 500 1 ALA B 48 -20.83 63.73 REMARK 500 1 LEU B 64 48.46 -98.98 REMARK 500 1 GLU B 65 -95.97 -76.34 REMARK 500 1 HIS B 66 -70.57 61.48 REMARK 500 2 ASN A 3 -19.10 -152.16 REMARK 500 2 SER A 17 143.62 -172.62 REMARK 500 2 ILE A 28 -80.53 43.26 REMARK 500 2 GLN A 29 -24.65 -143.58 REMARK 500 2 LYS A 47 -70.79 59.91 REMARK 500 2 PRO A 63 87.71 -61.16 REMARK 500 2 GLU A 65 154.32 -37.33 REMARK 500 2 HIS A 66 75.47 -158.09 REMARK 500 2 HIS A 67 -92.14 -18.39 REMARK 500 2 HIS A 68 -156.15 -176.46 REMARK 500 2 HIS A 69 162.69 73.70 REMARK 500 2 HIS A 70 -3.28 -157.07 REMARK 500 2 VAL B 12 168.02 -48.20 REMARK 500 2 SER B 17 147.00 -174.43 REMARK 500 2 GLU B 22 129.76 -172.07 REMARK 500 2 ILE B 28 -84.05 38.26 REMARK 500 2 LYS B 47 -80.39 -92.47 REMARK 500 2 PRO B 63 97.44 -48.66 REMARK 500 2 GLU B 65 178.68 44.22 REMARK 500 2 HIS B 66 73.13 -174.84 REMARK 500 2 HIS B 69 -120.89 -176.39 REMARK 500 2 HIS B 70 -16.30 -45.66 REMARK 500 3 ASP A 2 114.72 63.34 REMARK 500 3 ILE A 28 -75.19 -1.97 REMARK 500 3 GLN A 29 -71.01 -59.35 REMARK 500 3 LYS A 38 86.13 39.72 REMARK 500 3 ALA A 48 49.31 -152.06 REMARK 500 3 PRO A 63 78.66 -49.12 REMARK 500 3 HIS A 68 41.36 -153.97 REMARK 500 3 HIS A 70 -55.49 -153.86 REMARK 500 3 GLU B 22 119.63 -160.85 REMARK 500 3 ILE B 28 -85.40 45.04 REMARK 500 3 GLN B 29 -20.62 -142.88 REMARK 500 REMARK 500 THIS ENTRY HAS 344 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: DHR8C RELATED DB: TARGETDB REMARK 900 RELATED ID: 16656 RELATED DB: BMRB DBREF 2KS0 A 1 63 UNP Q251Q8 Q251Q8_DESHY 20 82 DBREF 2KS0 B 1 63 UNP Q251Q8 Q251Q8_DESHY 20 82 SEQADV 2KS0 LEU A 64 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 GLU A 65 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 66 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 67 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 68 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 69 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 70 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS A 71 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 LEU B 64 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 GLU B 65 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 66 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 67 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 68 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 69 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 70 UNP Q251Q8 EXPRESSION TAG SEQADV 2KS0 HIS B 71 UNP Q251Q8 EXPRESSION TAG SEQRES 1 A 71 MET ASP ASN ARG GLN PHE LEU SER LEU THR GLY VAL SER SEQRES 2 A 71 LYS VAL GLN SER PHE ASP PRO LYS GLU ILE LEU LEU GLU SEQRES 3 A 71 THR ILE GLN GLY VAL LEU SER ILE LYS GLY GLU LYS LEU SEQRES 4 A 71 GLY ILE LYS HIS LEU ASP LEU LYS ALA GLY GLN VAL GLU SEQRES 5 A 71 VAL GLU GLY LEU ILE ASP ALA LEU VAL TYR PRO LEU GLU SEQRES 6 A 71 HIS HIS HIS HIS HIS HIS SEQRES 1 B 71 MET ASP ASN ARG GLN PHE LEU SER LEU THR GLY VAL SER SEQRES 2 B 71 LYS VAL GLN SER PHE ASP PRO LYS GLU ILE LEU LEU GLU SEQRES 3 B 71 THR ILE GLN GLY VAL LEU SER ILE LYS GLY GLU LYS LEU SEQRES 4 B 71 GLY ILE LYS HIS LEU ASP LEU LYS ALA GLY GLN VAL GLU SEQRES 5 B 71 VAL GLU GLY LEU ILE ASP ALA LEU VAL TYR PRO LEU GLU SEQRES 6 B 71 HIS HIS HIS HIS HIS HIS SHEET 1 A 5 GLN A 5 LEU A 9 0 SHEET 2 A 5 VAL A 51 VAL A 61 -1 O VAL A 51 N LEU A 9 SHEET 3 A 5 GLY A 30 GLY A 40 -1 N LYS A 35 O ALA A 59 SHEET 4 A 5 GLU A 22 THR A 27 -1 N ILE A 23 O ILE A 34 SHEET 5 A 5 VAL A 12 PHE A 18 -1 N SER A 13 O GLU A 26 SHEET 1 B 5 GLN B 5 LEU B 9 0 SHEET 2 B 5 VAL B 51 VAL B 61 -1 O VAL B 53 N LEU B 7 SHEET 3 B 5 GLY B 30 GLY B 40 -1 N LYS B 35 O ALA B 59 SHEET 4 B 5 GLU B 22 THR B 27 -1 N LEU B 25 O LEU B 32 SHEET 5 B 5 LYS B 14 ASP B 19 -1 N SER B 17 O LEU B 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1