HEADER    SIGNALING PROTEIN                       08-JAN-10   2KSN              
TITLE     SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DC-UBP/UBTD2           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UBIQUITIN DOMAIN-CONTAINING PROTEIN 2;                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 14-141;                                       
COMPND   5 SYNONYM: DENDRITIC CELL-DERIVED UBIQUITIN-LIKE PROTEIN, DC-UBP,      
COMPND   6 UBIQUITIN-LIKE PROTEIN SB72;                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: UBTD2, DCUBP, SB72;                                            
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET-22B                                    
KEYWDS    UBTD2, DC-UBP, UBIQUITIN, SIGNALING PROTEIN                           
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    A.SONG,C.ZHOU,X.GUAN,K.SZE,H.HU                                       
REVDAT   3   29-MAY-24 2KSN    1       REMARK                                   
REVDAT   2   16-MAR-22 2KSN    1       REMARK SEQADV                            
REVDAT   1   19-MAY-10 2KSN    0                                                
JRNL        AUTH   A.SONG,C.ZHOU,X.GUAN,K.SZE,H.HU                              
JRNL        TITL   SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DC-UBP/UBTD2  
JRNL        TITL 2 AND ITS INTERACTION WITH UBIQUITIN                           
JRNL        REF    PROTEIN SCI.                  V.  19  1104 2010              
JRNL        REFN                   ISSN 0961-8368                               
JRNL        PMID   20440844                                                     
JRNL        DOI    10.1002/PRO.386                                              
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, ARIA 2.0                                    
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), LINGE, O'DONOGHUE AND NILGES (ARIA)       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2KSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000101524.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1MM [U-100% 15N] PROTEIN-1, 20MM   
REMARK 210                                   SODIUM PHOSPHATE-2, 100MM SODIUM   
REMARK 210                                   CHLORIDE-3, 90% H2O/10% D2O; 1MM   
REMARK 210                                   [U-100% 13C; U-100% 15N] PROTEIN-  
REMARK 210                                   4, 20MM SODIUM PHOSPHATE-5,        
REMARK 210                                   100MM SODIUM CHLORIDE-6, 90% H2O/  
REMARK 210                                   10% D2O                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D HNHA; 3D 1H     
REMARK 210                                   -15N NOESY; 3D CBCA(CO)NH; 3D      
REMARK 210                                   HNCACB; 3D C(CO)NH; 3D HNCO; 3D    
REMARK 210                                   HCCH-TOCSY; 3D HCCH-COSY; 3D 1H-   
REMARK 210                                   13C NOESY                          
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY, ARIA 2.0, PROCHECKNMR      
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-10                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET A    13                                                      
REMARK 465     LEU A   142                                                      
REMARK 465     GLU A   143                                                      
REMARK 465     HIS A   144                                                      
REMARK 465     HIS A   145                                                      
REMARK 465     HIS A   146                                                      
REMARK 465     HIS A   147                                                      
REMARK 465     HIS A   148                                                      
REMARK 465     HIS A   149                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HE1  TRP A    39    HG23  VAL A   120              1.07            
REMARK 500  HG13  ILE A    98     HA   ASP A   110              1.33            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ASN A  16       71.54     53.06                                   
REMARK 500  1 VAL A  24      124.35     71.93                                   
REMARK 500  1 ALA A  25      -68.24   -128.73                                   
REMARK 500  1 PRO A  31     -164.53    -78.60                                   
REMARK 500  1 TRP A  39      -13.39    147.51                                   
REMARK 500  1 MET A  45      -81.99   -102.98                                   
REMARK 500  1 ALA A  61      -75.58    -75.58                                   
REMARK 500  1 ALA A  63     -106.42     56.20                                   
REMARK 500  1 GLU A  65     -172.60     76.03                                   
REMARK 500  1 ASN A  97      -30.47    156.31                                   
REMARK 500  1 LEU A 123      -54.35   -137.08                                   
REMARK 500  1 ILE A 130      -73.62     72.50                                   
REMARK 500  1 ASP A 135      -48.30   -162.95                                   
REMARK 500  1 GLU A 137      -55.88   -139.50                                   
REMARK 500  2 SER A  19       46.44    -79.90                                   
REMARK 500  2 GLU A  20      -60.07     70.66                                   
REMARK 500  2 THR A  22       54.29   -102.03                                   
REMARK 500  2 ALA A  25      -79.45    -85.71                                   
REMARK 500  2 PRO A  31     -164.57    -79.71                                   
REMARK 500  2 LYS A  33      109.53    -57.25                                   
REMARK 500  2 TRP A  39       25.17   -176.30                                   
REMARK 500  2 MET A  45      -82.64     78.18                                   
REMARK 500  2 ALA A  63     -116.31     61.86                                   
REMARK 500  2 ARG A  67       94.72    -66.51                                   
REMARK 500  2 LEU A 123      -71.38   -133.85                                   
REMARK 500  2 ILE A 127       52.74    -90.91                                   
REMARK 500  2 GLU A 132     -106.00    -84.77                                   
REMARK 500  2 SER A 134     -108.88     38.24                                   
REMARK 500  2 LEU A 139       44.40   -142.30                                   
REMARK 500  3 LEU A  15       39.55    -98.88                                   
REMARK 500  3 ALA A  25      -70.11    -73.37                                   
REMARK 500  3 PRO A  31     -165.29    -76.63                                   
REMARK 500  3 TRP A  39       -4.52    125.64                                   
REMARK 500  3 MET A  45      -81.30    -91.76                                   
REMARK 500  3 ALA A  63     -107.44     55.42                                   
REMARK 500  3 LEU A 123      -53.04   -132.54                                   
REMARK 500  3 ILE A 130      -70.95     69.17                                   
REMARK 500  3 LYS A 133      -89.03     20.38                                   
REMARK 500  3 SER A 134       81.77    179.36                                   
REMARK 500  3 ASP A 135      -41.02   -134.05                                   
REMARK 500  3 ILE A 136      -80.40    -36.06                                   
REMARK 500  4 SER A  19       46.18    -79.11                                   
REMARK 500  4 GLU A  20      116.02     64.98                                   
REMARK 500  4 VAL A  24      125.26     73.52                                   
REMARK 500  4 ALA A  25      -88.13   -103.73                                   
REMARK 500  4 PRO A  31     -164.99    -79.59                                   
REMARK 500  4 TRP A  39      -17.25    152.01                                   
REMARK 500  4 MET A  45     -137.64   -108.03                                   
REMARK 500  4 GLU A  65     -136.47     42.27                                   
REMARK 500  4 LEU A 123      -52.05   -139.60                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     151 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2KSN A   14   141  UNP    Q8WUN7   UBTD2_HUMAN     14    141             
SEQADV 2KSN MET A   13  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN LEU A  142  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN GLU A  143  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  144  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  145  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  146  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  147  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  148  UNP  Q8WUN7              EXPRESSION TAG                 
SEQADV 2KSN HIS A  149  UNP  Q8WUN7              EXPRESSION TAG                 
SEQRES   1 A  137  MET SER LEU ASN GLU ASN SER GLU GLY THR GLY VAL ALA          
SEQRES   2 A  137  LEU GLY ARG ASN GLN PRO LEU LYS LYS GLU LYS PRO LYS          
SEQRES   3 A  137  TRP LYS SER ASP TYR PRO MET THR ASP GLY GLN LEU ARG          
SEQRES   4 A  137  SER LYS ARG ASP GLU PHE TRP ASP THR ALA PRO ALA PHE          
SEQRES   5 A  137  GLU GLY ARG LYS GLU ILE TRP ASP ALA LEU LYS ALA ALA          
SEQRES   6 A  137  ALA HIS ALA PHE GLU SER ASN ASP HIS GLU LEU ALA GLN          
SEQRES   7 A  137  ALA ILE ILE ASP GLY ALA ASN ILE THR LEU PRO HIS GLY          
SEQRES   8 A  137  ALA LEU THR GLU CYS TYR ASP GLU LEU GLY ASN ARG TYR          
SEQRES   9 A  137  GLN LEU PRO VAL TYR CYS LEU ALA PRO PRO ILE ASN MET          
SEQRES  10 A  137  ILE GLU GLU LYS SER ASP ILE GLU THR LEU ASP ILE LEU          
SEQRES  11 A  137  GLU HIS HIS HIS HIS HIS HIS                                  
HELIX    1   1 THR A   46  ASP A   59  1                                  14    
HELIX    2   2 ARG A   67  SER A   83  1                                  17    
HELIX    3   3 ASP A   85  ASN A   97  1                                  13    
HELIX    4   4 PRO A  119  LEU A  123  5                                   5    
SHEET    1   A 2 GLU A 107  ASP A 110  0                                        
SHEET    2   A 2 ASN A 114  GLN A 117 -1  O  TYR A 116   N  CYS A 108           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1