HEADER HYDROLASE 14-JAN-10 2KSV TITLE THE NMR STRUCTURE OF PROTEIN-GLUTAMINASE FROM CHRYSEOBACTERIUM TITLE 2 PROTEOLYTICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-GLUTAMINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 136-320; COMPND 5 EC: 3.5.1.44; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHRYSEOBACTERIUM PROTEOLYTICUM; SOURCE 3 ORGANISM_TAXID: 118127; SOURCE 4 STRAIN: 9670; SOURCE 5 GENE: PRGA; SOURCE 6 EXPRESSION_SYSTEM: CORYNEBACTERIUM GLUTAMICUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1718; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPK4 KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUMETA,N.MIWA,K.OGURA,Y.KAI,T.MIZUKOSHI,N.SHIMBA,E.SUZUKI,F.INAGAKI REVDAT 3 16-MAR-22 2KSV 1 REMARK REVDAT 2 05-MAY-10 2KSV 1 JRNL REVDAT 1 16-FEB-10 2KSV 0 JRNL AUTH H.KUMETA,N.MIWA,K.OGURA,Y.KAI,T.MIZUKOSHI,N.SHIMBA,E.SUZUKI, JRNL AUTH 2 F.INAGAKI JRNL TITL THE NMR STRUCTURE OF PROTEIN-GLUTAMINASE FROM JRNL TITL 2 CHRYSEOBACTERIUM PROTEOLYTICUM. JRNL REF J.BIOMOL.NMR V. 46 251 2010 JRNL REFN ISSN 0925-2738 JRNL PMID 20195702 JRNL DOI 10.1007/S10858-010-9399-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101531. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM [U-13C; U-15N] PROTEIN REMARK 210 GLUTAMINASE-1, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCO; 3D HN(CO)CA; 3D HNCA; REMARK 210 3D HBHA(CO)NH; 3D HN(CA)HA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D CCH- REMARK 210 TOCSY; 3D 1H-13C NOESY; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 5.0, SPARKY 3.111, REMARK 210 TALOS, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 157 133.68 -38.53 REMARK 500 1 SER A 164 -163.96 -64.59 REMARK 500 1 VAL A 174 -72.83 -148.85 REMARK 500 1 CYS A 177 -48.15 -134.30 REMARK 500 1 CYS A 211 148.10 -173.96 REMARK 500 1 TYR A 217 129.83 -176.23 REMARK 500 1 ASN A 227 -160.22 -75.02 REMARK 500 1 LEU A 241 -47.12 -135.21 REMARK 500 1 ASN A 258 107.27 -50.23 REMARK 500 1 ALA A 264 144.33 -170.30 REMARK 500 1 VAL A 276 101.70 -43.88 REMARK 500 1 ASN A 283 40.80 72.82 REMARK 500 1 TYR A 287 115.49 -160.59 REMARK 500 1 PHE A 301 37.72 -94.58 REMARK 500 1 PRO A 313 -162.24 -74.96 REMARK 500 2 SER A 164 -170.16 -54.28 REMARK 500 2 VAL A 174 -72.34 -152.09 REMARK 500 2 CYS A 177 -48.47 -147.95 REMARK 500 2 MET A 184 -31.45 -38.74 REMARK 500 2 TYR A 217 128.41 -175.33 REMARK 500 2 ALA A 220 -159.43 -144.46 REMARK 500 2 ASN A 227 -159.91 -75.12 REMARK 500 2 ILE A 237 43.80 -105.33 REMARK 500 2 LEU A 241 -46.59 -130.96 REMARK 500 2 ASN A 258 109.24 -51.34 REMARK 500 2 VAL A 276 101.58 -43.60 REMARK 500 2 ASN A 283 41.57 76.70 REMARK 500 2 TYR A 287 115.37 -161.31 REMARK 500 2 PHE A 301 40.41 -106.02 REMARK 500 2 PRO A 311 -168.22 -74.97 REMARK 500 2 PRO A 313 -162.39 -75.03 REMARK 500 2 CYS A 318 -174.14 -67.06 REMARK 500 3 SER A 157 129.59 -39.47 REMARK 500 3 SER A 164 -166.99 -55.59 REMARK 500 3 VAL A 174 -67.94 -153.41 REMARK 500 3 ALA A 206 122.53 -172.96 REMARK 500 3 CYS A 211 137.45 -176.69 REMARK 500 3 TYR A 217 130.42 -173.96 REMARK 500 3 ASN A 227 -160.07 -75.62 REMARK 500 3 ILE A 237 45.02 -102.38 REMARK 500 3 ASN A 258 107.95 -54.52 REMARK 500 3 ALA A 264 146.32 -172.50 REMARK 500 3 ASN A 283 35.96 78.27 REMARK 500 3 PHE A 301 37.39 -99.67 REMARK 500 3 PRO A 311 -168.94 -74.96 REMARK 500 3 PRO A 313 -162.36 -75.02 REMARK 500 3 CYS A 318 -173.31 -66.60 REMARK 500 4 SER A 157 122.57 -38.70 REMARK 500 4 SER A 164 -164.06 -61.72 REMARK 500 4 VAL A 174 -69.52 -151.82 REMARK 500 REMARK 500 THIS ENTRY HAS 301 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KSV A 136 320 UNP Q9AQQ8 Q9AQQ8_9FLAO 136 320 SEQRES 1 A 185 LEU ALA SER VAL ILE PRO ASP VAL ALA THR LEU ASN SER SEQRES 2 A 185 LEU PHE ASN GLN ILE LYS ASN GLN SER CYS GLY THR SER SEQRES 3 A 185 THR ALA SER SER PRO CYS ILE THR PHE ARG TYR PRO VAL SEQRES 4 A 185 ASP GLY CYS TYR ALA ARG ALA HIS LYS MET ARG GLN ILE SEQRES 5 A 185 LEU MET ASN ASN GLY TYR ASP CYS GLU LYS GLN PHE VAL SEQRES 6 A 185 TYR GLY ASN LEU LYS ALA SER THR GLY THR CYS CYS VAL SEQRES 7 A 185 ALA TRP SER TYR HIS VAL ALA ILE LEU VAL SER TYR LYS SEQRES 8 A 185 ASN ALA SER GLY VAL THR GLU LYS ARG ILE ILE ASP PRO SEQRES 9 A 185 SER LEU PHE SER SER GLY PRO VAL THR ASP THR ALA TRP SEQRES 10 A 185 ARG ASN ALA CYS VAL ASN THR SER CYS GLY SER ALA SER SEQRES 11 A 185 VAL SER SER TYR ALA ASN THR ALA GLY ASN VAL TYR TYR SEQRES 12 A 185 ARG SER PRO SER ASN SER TYR LEU TYR ASP ASN ASN LEU SEQRES 13 A 185 ILE ASN THR ASN CYS VAL LEU THR LYS PHE SER LEU LEU SEQRES 14 A 185 SER GLY CYS SER PRO SER PRO ALA PRO ASP VAL SER SER SEQRES 15 A 185 CYS GLY PHE HELIX 1 1 ASP A 142 GLN A 156 1 15 HELIX 2 2 CYS A 177 GLY A 192 1 16 HELIX 3 3 THR A 248 VAL A 257 1 10 HELIX 4 4 ASN A 293 PHE A 301 1 9 SHEET 1 A 4 ARG A 235 ILE A 236 0 SHEET 2 A 4 CYS A 212 VAL A 223 -1 N VAL A 223 O ARG A 235 SHEET 3 A 4 GLU A 196 SER A 207 -1 N GLY A 202 O SER A 216 SHEET 4 A 4 SER A 265 ALA A 273 -1 O SER A 268 N TYR A 201 SSBOND 1 CYS A 158 CYS A 167 1555 1555 2.08 SSBOND 2 CYS A 211 CYS A 307 1555 1555 2.00 SSBOND 3 CYS A 212 CYS A 261 1555 1555 2.11 SSBOND 4 CYS A 296 CYS A 318 1555 1555 2.05 CISPEP 1 SER A 165 PRO A 166 1 0.03 CISPEP 2 SER A 308 PRO A 309 1 0.02 CISPEP 3 SER A 310 PRO A 311 1 0.06 CISPEP 4 SER A 165 PRO A 166 2 0.02 CISPEP 5 SER A 308 PRO A 309 2 -0.02 CISPEP 6 SER A 310 PRO A 311 2 0.05 CISPEP 7 SER A 165 PRO A 166 3 0.00 CISPEP 8 SER A 308 PRO A 309 3 -0.03 CISPEP 9 SER A 310 PRO A 311 3 -0.01 CISPEP 10 SER A 165 PRO A 166 4 0.02 CISPEP 11 SER A 308 PRO A 309 4 -0.02 CISPEP 12 SER A 310 PRO A 311 4 -0.01 CISPEP 13 SER A 165 PRO A 166 5 0.04 CISPEP 14 SER A 308 PRO A 309 5 -0.07 CISPEP 15 SER A 310 PRO A 311 5 -0.02 CISPEP 16 SER A 165 PRO A 166 6 0.01 CISPEP 17 SER A 308 PRO A 309 6 0.00 CISPEP 18 SER A 310 PRO A 311 6 0.06 CISPEP 19 SER A 165 PRO A 166 7 0.09 CISPEP 20 SER A 308 PRO A 309 7 -0.06 CISPEP 21 SER A 310 PRO A 311 7 -0.05 CISPEP 22 SER A 165 PRO A 166 8 0.02 CISPEP 23 SER A 308 PRO A 309 8 -0.02 CISPEP 24 SER A 310 PRO A 311 8 -0.01 CISPEP 25 SER A 165 PRO A 166 9 -0.01 CISPEP 26 SER A 308 PRO A 309 9 0.05 CISPEP 27 SER A 310 PRO A 311 9 0.07 CISPEP 28 SER A 165 PRO A 166 10 0.04 CISPEP 29 SER A 308 PRO A 309 10 -0.10 CISPEP 30 SER A 310 PRO A 311 10 -0.07 CISPEP 31 SER A 165 PRO A 166 11 -0.03 CISPEP 32 SER A 308 PRO A 309 11 -0.01 CISPEP 33 SER A 310 PRO A 311 11 -0.01 CISPEP 34 SER A 165 PRO A 166 12 -0.05 CISPEP 35 SER A 308 PRO A 309 12 0.07 CISPEP 36 SER A 310 PRO A 311 12 -0.05 CISPEP 37 SER A 165 PRO A 166 13 0.03 CISPEP 38 SER A 308 PRO A 309 13 -0.04 CISPEP 39 SER A 310 PRO A 311 13 0.05 CISPEP 40 SER A 165 PRO A 166 14 -0.05 CISPEP 41 SER A 308 PRO A 309 14 -0.07 CISPEP 42 SER A 310 PRO A 311 14 -0.01 CISPEP 43 SER A 165 PRO A 166 15 -0.08 CISPEP 44 SER A 308 PRO A 309 15 0.03 CISPEP 45 SER A 310 PRO A 311 15 -0.04 CISPEP 46 SER A 165 PRO A 166 16 0.02 CISPEP 47 SER A 308 PRO A 309 16 0.02 CISPEP 48 SER A 310 PRO A 311 16 0.07 CISPEP 49 SER A 165 PRO A 166 17 -0.07 CISPEP 50 SER A 308 PRO A 309 17 0.03 CISPEP 51 SER A 310 PRO A 311 17 0.05 CISPEP 52 SER A 165 PRO A 166 18 -0.05 CISPEP 53 SER A 308 PRO A 309 18 -0.01 CISPEP 54 SER A 310 PRO A 311 18 -0.04 CISPEP 55 SER A 165 PRO A 166 19 0.06 CISPEP 56 SER A 308 PRO A 309 19 -0.09 CISPEP 57 SER A 310 PRO A 311 19 0.01 CISPEP 58 SER A 165 PRO A 166 20 -0.02 CISPEP 59 SER A 308 PRO A 309 20 0.03 CISPEP 60 SER A 310 PRO A 311 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1