data_2KSW # _entry.id 2KSW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KSW pdb_00002ksw 10.2210/pdb2ksw/pdb RCSB RCSB101532 ? ? WWPDB D_1000101532 ? ? BMRB 16676 ? ? # _pdbx_database_related.db_id 16676 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KSW _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-01-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horita, S.' 1 'Ishibashi, J.' 2 'Nagata, K.' 3 'Miyakawa, T.' 4 'Yamakawa, M.' 5 'Tanokura, M.' 6 # _citation.id primary _citation.title ;Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 30150 _citation.page_last 30158 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20630859 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.124735 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horita, S.' 1 ? primary 'Ishibashi, J.' 2 ? primary 'Nagata, K.' 3 ? primary 'Miyakawa, T.' 4 ? primary 'Yamakawa, M.' 5 ? primary 'Tanokura, M.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Oryctin _entity.formula_weight 7257.395 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 20-85' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VPVGSDCEPKLCTMDLVPHCFLNPEKGIVVVHGGCALSKYKCQNPNHEKLGYTHECEEAIKNAPRP _entity_poly.pdbx_seq_one_letter_code_can VPVGSDCEPKLCTMDLVPHCFLNPEKGIVVVHGGCALSKYKCQNPNHEKLGYTHECEEAIKNAPRP _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 PRO n 1 3 VAL n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 CYS n 1 8 GLU n 1 9 PRO n 1 10 LYS n 1 11 LEU n 1 12 CYS n 1 13 THR n 1 14 MET n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 PRO n 1 19 HIS n 1 20 CYS n 1 21 PHE n 1 22 LEU n 1 23 ASN n 1 24 PRO n 1 25 GLU n 1 26 LYS n 1 27 GLY n 1 28 ILE n 1 29 VAL n 1 30 VAL n 1 31 VAL n 1 32 HIS n 1 33 GLY n 1 34 GLY n 1 35 CYS n 1 36 ALA n 1 37 LEU n 1 38 SER n 1 39 LYS n 1 40 TYR n 1 41 LYS n 1 42 CYS n 1 43 GLN n 1 44 ASN n 1 45 PRO n 1 46 ASN n 1 47 HIS n 1 48 GLU n 1 49 LYS n 1 50 LEU n 1 51 GLY n 1 52 TYR n 1 53 THR n 1 54 HIS n 1 55 GLU n 1 56 CYS n 1 57 GLU n 1 58 GLU n 1 59 ALA n 1 60 ILE n 1 61 LYS n 1 62 ASN n 1 63 ALA n 1 64 PRO n 1 65 ARG n 1 66 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Coconut rhinoceros beetle' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Oryctes rhinoceros' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 72550 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET32a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O96050_ORYRH _struct_ref.pdbx_db_accession O96050 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VPVGSDCEPKLCTMDLVPHCFLNPEKGIVVVHGGCALSKYKCQNPNHEKLGYTHECEEAIKNAPRP _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KSW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 66 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O96050 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 85 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 66 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D CBCA(CO)NH' 1 3 1 '3D C(CO)NH' 1 4 1 '3D HNCO' 1 5 1 '3D HNCA' 1 6 1 '3D HNCACB' 1 7 1 '3D HN(CO)CA' 1 8 1 '3D H(CCO)NH' 1 9 1 '3D HCCH-TOCSY' 1 10 1 '3D 1H-15N NOESY' 1 11 1 '3D HCCH-COSY' 1 12 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;2 mM [U-100% 13C; U-100% 15N] oryctin-1, 100 mM sodium chloride-2, 10 % D2O-3, 90 % H2O-4, 50 mM sodium phosphate-5, 0.02 w/v sodium azide-6, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KSW _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KSW _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KSW _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Guntert P.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CYANA _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KSW _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KSW _struct.title 'Backbone 1H, 13C, and 15N Chemical Shift Assignments for Oryctin' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KSW _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'Kazal-type, PROTEASE INHIBITOR, HYDROLASE INHIBITOR' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? ASN A 44 ? GLY A 33 ASN A 44 1 ? 12 HELX_P HELX_P2 2 THR A 53 ? GLU A 57 ? THR A 53 GLU A 57 5 ? 5 HELX_P HELX_P3 3 GLU A 58 ? ALA A 63 ? GLU A 58 ALA A 63 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 7 A CYS 42 1_555 ? ? ? ? ? ? ? 2.162 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 12 A CYS 35 1_555 ? ? ? ? ? ? ? 1.971 ? ? disulf3 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 20 A CYS 56 1_555 ? ? ? ? ? ? ? 1.963 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 19 ? LEU A 22 ? HIS A 19 LEU A 22 A 2 ILE A 28 ? VAL A 31 ? ILE A 28 VAL A 31 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id HIS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 19 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id HIS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 19 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 31 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 31 # _atom_sites.entry_id 2KSW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 PRO 66 66 66 PRO PRO A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id oryctin-1 2 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium chloride-2' 100 ? mM ? 1 D2O-3 10 ? % ? 1 H2O-4 90 ? % ? 1 'sodium phosphate-5' 50 ? mM ? 1 'sodium azide-6' 0.02 ? w/v ? 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 3 ? ? -153.88 72.14 2 1 LYS A 10 ? ? -142.18 11.90 3 1 LEU A 11 ? ? 178.27 88.25 4 1 ASP A 15 ? ? -179.72 -179.94 5 1 LYS A 26 ? ? -141.08 -69.08 6 1 TYR A 52 ? ? -163.06 29.25 7 2 VAL A 3 ? ? -173.45 133.17 8 2 SER A 5 ? ? -94.66 37.26 9 2 LYS A 10 ? ? -151.24 19.59 10 2 LEU A 11 ? ? -179.72 125.24 11 2 LEU A 16 ? ? -113.78 50.02 12 2 LYS A 26 ? ? -133.69 -66.33 13 3 SER A 5 ? ? -141.53 26.01 14 3 LYS A 10 ? ? -179.07 -33.92 15 3 LEU A 16 ? ? -117.66 50.21 16 3 LYS A 26 ? ? -127.28 -69.86 17 3 ASN A 44 ? ? -150.92 79.68 18 4 VAL A 3 ? ? -178.33 145.91 19 4 LEU A 11 ? ? -177.24 110.94 20 4 LEU A 50 ? ? 62.25 164.22 21 5 LYS A 10 ? ? -178.18 -34.72 22 5 LYS A 26 ? ? -140.74 -74.89 23 5 TYR A 52 ? ? -98.45 41.51 24 5 PRO A 64 ? ? -69.72 86.12 25 6 ASP A 6 ? ? -130.28 -39.29 26 6 LYS A 10 ? ? -148.20 17.62 27 6 LEU A 11 ? ? -179.44 110.70 28 6 LYS A 26 ? ? -133.34 -70.95 29 6 ILE A 28 ? ? -62.25 96.06 30 6 TYR A 52 ? ? -173.33 31.83 31 6 PRO A 64 ? ? -69.75 97.57 32 7 SER A 5 ? ? -174.82 -36.68 33 7 LYS A 10 ? ? -153.42 20.43 34 7 LEU A 11 ? ? 179.35 109.92 35 7 LYS A 26 ? ? -163.63 -69.19 36 7 TYR A 52 ? ? -169.31 66.12 37 8 VAL A 3 ? ? -147.61 17.94 38 8 SER A 5 ? ? -97.63 41.66 39 8 ASP A 6 ? ? -128.05 -75.93 40 8 LEU A 11 ? ? -179.44 121.46 41 8 ASP A 15 ? ? -179.68 -170.71 42 8 PRO A 64 ? ? -69.76 97.73 43 9 VAL A 3 ? ? -176.91 126.61 44 9 LEU A 11 ? ? -179.58 120.66 45 9 ASP A 15 ? ? -60.51 -169.63 46 9 LEU A 16 ? ? -143.55 39.99 47 9 LYS A 26 ? ? -141.58 -69.35 48 9 ILE A 28 ? ? -62.39 93.99 49 9 TYR A 52 ? ? -178.53 34.01 50 10 LYS A 10 ? ? -141.65 12.07 51 10 LEU A 11 ? ? 178.71 91.13 52 10 LEU A 16 ? ? -111.06 52.66 53 10 LYS A 26 ? ? -122.95 -50.84 54 10 TYR A 52 ? ? -140.82 28.73 55 11 LEU A 11 ? ? -175.97 129.13 56 11 ASP A 15 ? ? -111.00 -168.99 57 11 LYS A 26 ? ? -135.72 -70.14 58 11 LEU A 50 ? ? 54.08 -174.25 59 12 VAL A 3 ? ? -144.36 10.37 60 12 SER A 5 ? ? -166.49 27.34 61 12 LYS A 10 ? ? -167.35 27.89 62 12 LEU A 11 ? ? 178.70 119.60 63 12 LYS A 26 ? ? -133.79 -70.88 64 12 ILE A 28 ? ? -51.52 102.80 65 13 ASP A 6 ? ? -62.45 -75.37 66 13 LYS A 10 ? ? -179.35 -41.78 67 13 LEU A 11 ? ? -175.64 127.67 68 13 ASP A 15 ? ? -104.42 -169.59 69 13 LYS A 26 ? ? -163.54 -65.28 70 13 ASN A 44 ? ? -154.16 80.60 71 13 TYR A 52 ? ? -151.11 68.27 72 14 SER A 5 ? ? -103.83 -61.54 73 14 LYS A 10 ? ? -163.88 -39.36 74 14 LEU A 16 ? ? -111.52 50.72 75 14 LYS A 26 ? ? -130.43 -68.71 76 14 LEU A 50 ? ? 50.72 -165.83 77 14 TYR A 52 ? ? 60.07 78.55 78 15 LYS A 10 ? ? -159.56 23.54 79 15 LEU A 11 ? ? 179.58 121.51 80 15 LEU A 16 ? ? -170.87 40.74 81 15 LYS A 26 ? ? -145.81 -75.79 82 16 ASP A 6 ? ? -129.65 -65.43 83 16 LYS A 10 ? ? -179.31 -34.83 84 16 LEU A 11 ? ? -173.08 111.28 85 16 ASP A 15 ? ? 50.33 -168.20 86 16 LEU A 16 ? ? -166.75 36.08 87 16 ILE A 28 ? ? 35.37 83.32 88 16 TYR A 52 ? ? -176.66 57.99 89 17 ASP A 6 ? ? -142.80 21.64 90 17 LYS A 10 ? ? -158.46 24.04 91 17 LEU A 11 ? ? -179.45 105.98 92 17 LEU A 16 ? ? -109.43 50.75 93 17 VAL A 17 ? ? -111.52 79.87 94 17 LYS A 26 ? ? -140.33 -50.39 95 17 ASN A 44 ? ? -154.90 76.14 96 18 ASP A 6 ? ? -179.01 43.64 97 18 LYS A 10 ? ? -179.72 -34.09 98 18 LEU A 11 ? ? -164.84 112.47 99 18 ASP A 15 ? ? -179.69 -171.79 100 19 VAL A 3 ? ? 35.95 86.59 101 19 LYS A 10 ? ? -162.34 25.56 102 19 LEU A 11 ? ? 179.43 106.29 103 19 LEU A 50 ? ? 59.86 171.02 104 20 VAL A 3 ? ? 65.02 149.09 105 20 LYS A 10 ? ? -169.91 29.33 106 20 LEU A 11 ? ? 179.35 94.10 107 20 LEU A 16 ? ? -104.81 51.68 108 20 LYS A 26 ? ? -126.49 -67.86 109 20 ILE A 28 ? ? 35.38 85.88 #