data_2KSY # _entry.id 2KSY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KSY RCSB RCSB101534 WWPDB D_1000101534 # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KSY _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gautier, A.' 1 'Mott, H.R.' 2 'Bostock, M.J.' 3 'Kirkpatrick, J.P.' 4 'Nietlispach, D.' 5 # _citation.id primary _citation.title 'Structure determination of the seven-helix transmembrane receptor sensory rhodopsin II by solution NMR spectroscopy.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 768 _citation.page_last 774 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20512150 _citation.pdbx_database_id_DOI 10.1038/nsmb.1807 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gautier, A.' 1 primary 'Mott, H.R.' 2 primary 'Bostock, M.J.' 3 primary 'Kirkpatrick, J.P.' 4 primary 'Nietlispach, D.' 5 # _cell.entry_id 2KSY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KSY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensory rhodopsin II' 26455.969 1 ? ? ? ? 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYAVMALGVGWVPVAERTVFVPRYIDWILTT PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFIGLVYYLVGPMTESASQRSSGIKSLY VRLRNLTVVLWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVDTDTPAVADL EHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYAVMALGVGWVPVAERTVFVPRYIDWILTT PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFIGLVYYLVGPMTESASQRSSGIKSLY VRLRNLTVVLWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVDTDTPAVADL EHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLY n 1 4 LEU n 1 5 THR n 1 6 THR n 1 7 LEU n 1 8 PHE n 1 9 TRP n 1 10 LEU n 1 11 GLY n 1 12 ALA n 1 13 ILE n 1 14 GLY n 1 15 MET n 1 16 LEU n 1 17 VAL n 1 18 GLY n 1 19 THR n 1 20 LEU n 1 21 ALA n 1 22 PHE n 1 23 ALA n 1 24 TRP n 1 25 ALA n 1 26 GLY n 1 27 ARG n 1 28 ASP n 1 29 ALA n 1 30 GLY n 1 31 SER n 1 32 GLY n 1 33 GLU n 1 34 ARG n 1 35 ARG n 1 36 TYR n 1 37 TYR n 1 38 VAL n 1 39 THR n 1 40 LEU n 1 41 VAL n 1 42 GLY n 1 43 ILE n 1 44 SER n 1 45 GLY n 1 46 ILE n 1 47 ALA n 1 48 ALA n 1 49 VAL n 1 50 ALA n 1 51 TYR n 1 52 ALA n 1 53 VAL n 1 54 MET n 1 55 ALA n 1 56 LEU n 1 57 GLY n 1 58 VAL n 1 59 GLY n 1 60 TRP n 1 61 VAL n 1 62 PRO n 1 63 VAL n 1 64 ALA n 1 65 GLU n 1 66 ARG n 1 67 THR n 1 68 VAL n 1 69 PHE n 1 70 VAL n 1 71 PRO n 1 72 ARG n 1 73 TYR n 1 74 ILE n 1 75 ASP n 1 76 TRP n 1 77 ILE n 1 78 LEU n 1 79 THR n 1 80 THR n 1 81 PRO n 1 82 LEU n 1 83 ILE n 1 84 VAL n 1 85 TYR n 1 86 PHE n 1 87 LEU n 1 88 GLY n 1 89 LEU n 1 90 LEU n 1 91 ALA n 1 92 GLY n 1 93 LEU n 1 94 ASP n 1 95 SER n 1 96 ARG n 1 97 GLU n 1 98 PHE n 1 99 GLY n 1 100 ILE n 1 101 VAL n 1 102 ILE n 1 103 THR n 1 104 LEU n 1 105 ASN n 1 106 THR n 1 107 VAL n 1 108 VAL n 1 109 MET n 1 110 LEU n 1 111 ALA n 1 112 GLY n 1 113 PHE n 1 114 ALA n 1 115 GLY n 1 116 ALA n 1 117 MET n 1 118 VAL n 1 119 PRO n 1 120 GLY n 1 121 ILE n 1 122 GLU n 1 123 ARG n 1 124 TYR n 1 125 ALA n 1 126 LEU n 1 127 PHE n 1 128 GLY n 1 129 MET n 1 130 GLY n 1 131 ALA n 1 132 VAL n 1 133 ALA n 1 134 PHE n 1 135 ILE n 1 136 GLY n 1 137 LEU n 1 138 VAL n 1 139 TYR n 1 140 TYR n 1 141 LEU n 1 142 VAL n 1 143 GLY n 1 144 PRO n 1 145 MET n 1 146 THR n 1 147 GLU n 1 148 SER n 1 149 ALA n 1 150 SER n 1 151 GLN n 1 152 ARG n 1 153 SER n 1 154 SER n 1 155 GLY n 1 156 ILE n 1 157 LYS n 1 158 SER n 1 159 LEU n 1 160 TYR n 1 161 VAL n 1 162 ARG n 1 163 LEU n 1 164 ARG n 1 165 ASN n 1 166 LEU n 1 167 THR n 1 168 VAL n 1 169 VAL n 1 170 LEU n 1 171 TRP n 1 172 ALA n 1 173 ILE n 1 174 TYR n 1 175 PRO n 1 176 PHE n 1 177 ILE n 1 178 TRP n 1 179 LEU n 1 180 LEU n 1 181 GLY n 1 182 PRO n 1 183 PRO n 1 184 GLY n 1 185 VAL n 1 186 ALA n 1 187 LEU n 1 188 LEU n 1 189 THR n 1 190 PRO n 1 191 THR n 1 192 VAL n 1 193 ASP n 1 194 VAL n 1 195 ALA n 1 196 LEU n 1 197 ILE n 1 198 VAL n 1 199 TYR n 1 200 LEU n 1 201 ASP n 1 202 LEU n 1 203 VAL n 1 204 THR n 1 205 LYS n 1 206 VAL n 1 207 GLY n 1 208 PHE n 1 209 GLY n 1 210 PHE n 1 211 ILE n 1 212 ALA n 1 213 LEU n 1 214 ASP n 1 215 ALA n 1 216 ALA n 1 217 ALA n 1 218 THR n 1 219 LEU n 1 220 ARG n 1 221 ALA n 1 222 GLU n 1 223 HIS n 1 224 GLY n 1 225 GLU n 1 226 SER n 1 227 LEU n 1 228 ALA n 1 229 GLY n 1 230 VAL n 1 231 ASP n 1 232 THR n 1 233 ASP n 1 234 THR n 1 235 PRO n 1 236 ALA n 1 237 VAL n 1 238 ALA n 1 239 ASP n 1 240 LEU n 1 241 GLU n 1 242 HIS n 1 243 HIS n 1 244 HIS n 1 245 HIS n 1 246 HIS n 1 247 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Natronomonas pharaonis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2257 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET28 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3IMZ8_NATPD _struct_ref.pdbx_db_accession Q3IMZ8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYAVMALGVGWVPVAERTVFVPRYIDWILTT PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFIGLVYYLVGPMTESASQRSSGIKSLY VRLRNLTVVLWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVDTDTPAVAD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KSY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 239 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3IMZ8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 239 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KSY LEU A 240 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 240 1 1 2KSY GLU A 241 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 241 2 1 2KSY HIS A 242 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 242 3 1 2KSY HIS A 243 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 243 4 1 2KSY HIS A 244 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 244 5 1 2KSY HIS A 245 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 245 6 1 2KSY HIS A 246 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 246 7 1 2KSY HIS A 247 ? UNP Q3IMZ8 ? ? 'EXPRESSION TAG' 247 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 3 '3D HNCA' 1 4 3 '3D HN(CO)CA' 1 5 3 '3D HNCO' 1 6 3 '3D HN(CA)CO' 1 7 3 '3D HNCACB' 1 8 3 '3D HN(COCA)CB' 1 9 1 '3D 1H-15N NOESY' 1 10 2 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 323 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.5 mM [U-100% 15N] SENSORY RHODOPSIN II-1, 50 mM sodium chloride-2, 50 mM sodium phosphate-3, 0.05 % sodium azide-4, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.5 mM [U-100% 13C; U-100% 15N] SENSORY RHODOPSIN II-5, 50 mM sodium chloride-6, 50 mM sodium phosphate-7, 0.05 % sodium azide-8, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.5 mM [U-13C; U-15N; U-2H] SENSORY RHODOPSIN II-9, 50 mM sodium chloride-10, 50 mM sodium phosphate-11, 0.05 % sodium azide-12, 90% H2O/10% D2O ; 3 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker DRX 1 'Bruker DRX' 600 Bruker DRX 2 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2KSY _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 30 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KSY _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KSY _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA ? 1 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 2 CCPN 'chemical shift assignment' CcpNmr_Analysis ? 3 CCPN 'chemical shift calculation' CcpNmr_Analysis ? 4 CCPN 'peak picking' CcpNmr_Analysis ? 5 Boucher processing AZARA ? 6 'Cornilescu, Delaglio and Bax' 'torsion angle prediction' TALOS ? 7 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KSY _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KSY _struct.title 'Solution nmr structure of sensory rhodopsin II' _struct.pdbx_descriptor 'Sensory rhodopsin II' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KSY _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'membrane proteins, NMR spectroscopy, receptors, structure elucidation, transmembrane, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 4 ? ASP A 28 ? LEU A 4 ASP A 28 1 ? 25 HELX_P HELX_P2 2 GLU A 33 ? ALA A 55 ? GLU A 33 ALA A 55 1 ? 23 HELX_P HELX_P3 3 VAL A 70 ? GLY A 92 ? VAL A 70 GLY A 92 1 ? 23 HELX_P HELX_P4 4 ASP A 94 ? MET A 117 ? ASP A 94 MET A 117 1 ? 24 HELX_P HELX_P5 5 GLU A 122 ? VAL A 142 ? GLU A 122 VAL A 142 1 ? 21 HELX_P HELX_P6 6 PRO A 144 ? SER A 150 ? PRO A 144 SER A 150 1 ? 7 HELX_P HELX_P7 7 SER A 153 ? ALA A 172 ? SER A 153 ALA A 172 1 ? 20 HELX_P HELX_P8 8 ILE A 173 ? GLY A 181 ? ILE A 173 GLY A 181 1 ? 9 HELX_P HELX_P9 9 THR A 189 ? GLU A 222 ? THR A 189 GLU A 222 1 ? 34 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.258 _struct_conn.pdbx_value_order doub # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 60 ? VAL A 63 ? TRP A 60 VAL A 63 A 2 ARG A 66 ? PHE A 69 ? ARG A 66 PHE A 69 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 61 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 61 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 68 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 68 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE RET A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 TRP A 76 ? TRP A 76 . ? 1_555 ? 2 AC1 15 THR A 79 ? THR A 79 . ? 1_555 ? 3 AC1 15 THR A 80 ? THR A 80 . ? 1_555 ? 4 AC1 15 ILE A 83 ? ILE A 83 . ? 1_555 ? 5 AC1 15 VAL A 108 ? VAL A 108 . ? 1_555 ? 6 AC1 15 MET A 109 ? MET A 109 . ? 1_555 ? 7 AC1 15 GLY A 112 ? GLY A 112 . ? 1_555 ? 8 AC1 15 PHE A 127 ? PHE A 127 . ? 1_555 ? 9 AC1 15 GLY A 130 ? GLY A 130 . ? 1_555 ? 10 AC1 15 PHE A 134 ? PHE A 134 . ? 1_555 ? 11 AC1 15 TRP A 171 ? TRP A 171 . ? 1_555 ? 12 AC1 15 TYR A 174 ? TYR A 174 . ? 1_555 ? 13 AC1 15 ASP A 201 ? ASP A 201 . ? 1_555 ? 14 AC1 15 THR A 204 ? THR A 204 . ? 1_555 ? 15 AC1 15 LYS A 205 ? LYS A 205 . ? 1_555 ? # _atom_sites.entry_id 2KSY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 MET 129 129 129 MET MET A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 ARG 162 162 162 ARG ARG A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 ASN 165 165 165 ASN ASN A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 TRP 171 171 171 TRP TRP A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 TRP 178 178 178 TRP TRP A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 ASP 201 201 201 ASP ASP A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 LYS 205 205 205 LYS LYR A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 THR 218 218 218 THR THR A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 SER 226 226 226 SER SER A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 THR 232 232 232 THR THR A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 PRO 235 235 235 PRO PRO A . n A 1 236 ALA 236 236 236 ALA ALA A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 HIS 242 242 242 HIS HIS A . n A 1 243 HIS 243 243 243 HIS HIS A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 HIS 245 245 245 HIS HIS A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 HIS 247 247 247 HIS HIS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RET _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 205 _pdbx_nonpoly_scheme.pdb_mon_id RET _pdbx_nonpoly_scheme.auth_mon_id LYR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-06-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Structure summary' # _pdbx_entry_details.entry_id 2KSY _pdbx_entry_details.nonpolymer_details 'LIGAND LYR IS LYSINE_RETINAL' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'SENSORY RHODOPSIN II-1' 0.5 ? mM '[U-100% 15N]' 1 'sodium chloride-2' 50 ? mM ? 1 'sodium phosphate-3' 50 ? mM ? 1 'sodium azide-4' 0.05 ? % ? 1 'SENSORY RHODOPSIN II-5' 0.5 ? mM '[U-100% 13C; U-100% 15N]' 2 'sodium chloride-6' 50 ? mM ? 2 'sodium phosphate-7' 50 ? mM ? 2 'sodium azide-8' 0.05 ? % ? 2 'SENSORY RHODOPSIN II-9' 0.5 ? mM '[U-13C; U-15N; U-2H]' 3 'sodium chloride-10' 50 ? mM ? 3 'sodium phosphate-11' 50 ? mM ? 3 'sodium azide-12' 0.05 ? % ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 64 ? ? 57.67 -89.55 2 1 PRO A 183 ? ? -55.30 -9.95 3 1 ALA A 186 ? ? 56.18 85.36 4 1 LEU A 188 ? ? -90.13 -154.99 5 1 HIS A 223 ? ? -150.05 5.69 6 1 GLU A 225 ? ? 65.19 147.07 7 1 THR A 234 ? ? 58.37 89.32 8 1 ALA A 238 ? ? -140.83 -31.95 9 1 LEU A 240 ? ? -151.22 -36.01 10 1 GLU A 241 ? ? 63.98 112.94 11 1 HIS A 245 ? ? -136.37 -40.90 12 2 ARG A 27 ? ? 59.88 77.49 13 2 ASP A 28 ? ? 50.97 86.76 14 2 SER A 31 ? ? -156.63 -55.22 15 2 ALA A 64 ? ? 59.90 -86.86 16 2 PHE A 113 ? ? -53.27 -73.53 17 2 ALA A 186 ? ? 55.17 85.40 18 2 HIS A 223 ? ? 62.17 -176.24 19 2 GLU A 225 ? ? 59.93 101.41 20 2 LEU A 240 ? ? -155.26 4.14 21 2 HIS A 243 ? ? 62.01 109.04 22 2 HIS A 245 ? ? 61.39 102.04 23 3 ALA A 64 ? ? 58.04 -87.79 24 3 ALA A 186 ? ? 57.56 85.90 25 3 LEU A 188 ? ? -95.87 -158.39 26 3 HIS A 223 ? ? 64.83 164.76 27 3 THR A 232 ? ? -132.78 -32.40 28 3 VAL A 237 ? ? 64.10 120.76 29 3 HIS A 243 ? ? -169.29 111.83 30 4 ALA A 29 ? ? -160.92 -66.26 31 4 ALA A 64 ? ? 59.51 -86.42 32 4 PHE A 113 ? ? -57.67 -75.09 33 4 ALA A 186 ? ? -56.94 86.70 34 4 LEU A 188 ? ? -97.80 -147.97 35 4 HIS A 223 ? ? 64.82 131.34 36 4 SER A 226 ? ? -143.16 -30.02 37 4 ALA A 238 ? ? 59.38 99.58 38 4 ASP A 239 ? ? -143.04 -3.55 39 4 HIS A 245 ? ? -92.64 -62.24 40 5 SER A 31 ? ? 55.91 90.57 41 5 TRP A 60 ? ? -66.88 92.94 42 5 ALA A 64 ? ? 58.09 -88.93 43 5 ALA A 186 ? ? 57.65 85.41 44 5 THR A 232 ? ? -139.12 -65.46 45 5 ASP A 233 ? ? -88.79 -78.35 46 5 ALA A 236 ? ? 63.16 109.81 47 5 VAL A 237 ? ? 52.23 176.94 48 5 ASP A 239 ? ? 59.89 98.10 49 5 HIS A 245 ? ? 60.05 106.00 50 6 VAL A 2 ? ? 62.47 103.77 51 6 ARG A 27 ? ? 59.37 73.41 52 6 ASP A 28 ? ? 65.52 -71.34 53 6 ALA A 29 ? ? 64.41 -176.24 54 6 SER A 31 ? ? -149.45 -27.57 55 6 ALA A 64 ? ? 57.94 -91.42 56 6 ALA A 186 ? ? 57.51 87.18 57 6 LEU A 188 ? ? -103.52 -161.65 58 6 HIS A 223 ? ? 59.21 19.06 59 6 SER A 226 ? ? -136.89 -63.42 60 6 ASP A 233 ? ? 65.14 134.19 61 6 HIS A 242 ? ? -139.19 -45.34 62 6 HIS A 245 ? ? 60.91 -87.22 63 7 ALA A 64 ? ? 56.65 -91.70 64 7 PHE A 113 ? ? -57.14 -70.69 65 7 ALA A 186 ? ? -62.90 84.07 66 7 ASP A 233 ? ? -150.66 -68.07 67 7 ALA A 236 ? ? 60.02 97.93 68 7 ALA A 238 ? ? -155.39 -12.53 69 7 ASP A 239 ? ? 58.62 96.33 70 7 HIS A 242 ? ? -143.59 -44.44 71 8 VAL A 2 ? ? -138.64 -39.95 72 8 ALA A 64 ? ? 58.43 -88.05 73 8 PHE A 113 ? ? -56.10 -75.09 74 8 PRO A 183 ? ? -57.53 -9.92 75 8 ALA A 186 ? ? 54.56 84.83 76 8 LEU A 188 ? ? -96.82 -152.91 77 9 VAL A 2 ? ? -154.20 17.16 78 9 ALA A 29 ? ? -163.36 -167.91 79 9 TRP A 60 ? ? -60.21 99.22 80 9 ALA A 64 ? ? 58.54 -84.54 81 9 ALA A 186 ? ? 60.25 81.05 82 9 SER A 226 ? ? -138.14 -56.50 83 9 THR A 232 ? ? -161.95 -34.83 84 9 ASP A 239 ? ? 58.24 91.69 85 9 LEU A 240 ? ? -160.95 -12.99 86 10 VAL A 2 ? ? 58.75 101.65 87 10 ALA A 64 ? ? 59.16 -86.12 88 10 PRO A 182 ? ? -44.86 -179.79 89 10 PRO A 183 ? ? -50.11 5.06 90 10 ALA A 186 ? ? 41.99 81.19 91 10 LEU A 188 ? ? -105.80 -166.56 92 10 HIS A 223 ? ? 64.29 111.61 93 10 SER A 226 ? ? 59.61 -86.34 94 10 ALA A 238 ? ? -125.96 -50.33 95 10 ASP A 239 ? ? 57.86 100.41 96 11 VAL A 2 ? ? -141.24 -73.80 97 11 SER A 31 ? ? -164.07 87.55 98 11 ALA A 64 ? ? 59.11 -88.53 99 11 PRO A 182 ? ? -46.10 178.55 100 11 PRO A 183 ? ? -56.82 12.25 101 11 ALA A 186 ? ? 45.50 76.49 102 11 LEU A 188 ? ? -115.48 -168.59 103 11 ALA A 236 ? ? 61.00 173.74 104 11 ALA A 238 ? ? -161.67 -62.39 105 11 GLU A 241 ? ? 57.28 -171.00 106 11 HIS A 244 ? ? -173.97 114.61 107 12 ALA A 29 ? ? -73.29 -169.52 108 12 ALA A 64 ? ? 58.41 -85.78 109 12 ALA A 186 ? ? 56.39 87.55 110 12 LEU A 188 ? ? -106.79 -156.70 111 12 ASP A 233 ? ? 58.45 17.66 112 12 ALA A 236 ? ? 58.23 95.71 113 12 ALA A 238 ? ? -163.17 -48.96 114 12 ASP A 239 ? ? -143.83 -31.87 115 12 LEU A 240 ? ? 61.41 106.78 116 12 GLU A 241 ? ? 60.63 99.60 117 12 HIS A 243 ? ? -135.89 -65.43 118 13 ALA A 29 ? ? -163.37 -168.54 119 13 TRP A 60 ? ? -67.30 90.75 120 13 ALA A 64 ? ? 59.40 -88.31 121 13 ALA A 186 ? ? 55.31 84.88 122 13 LEU A 188 ? ? -102.81 -160.64 123 13 SER A 226 ? ? 59.96 107.53 124 13 ASP A 239 ? ? 59.11 -177.82 125 13 HIS A 245 ? ? 58.65 96.86 126 14 VAL A 2 ? ? 56.57 89.36 127 14 ALA A 29 ? ? -165.95 -79.54 128 14 ALA A 64 ? ? 58.58 -90.14 129 14 PHE A 113 ? ? -52.86 -72.69 130 14 ALA A 186 ? ? 53.41 86.59 131 14 LEU A 188 ? ? -92.93 -88.97 132 14 HIS A 223 ? ? 39.94 -156.63 133 14 GLU A 225 ? ? 58.89 98.66 134 14 THR A 234 ? ? 57.05 87.05 135 14 VAL A 237 ? ? 62.25 108.13 136 14 ALA A 238 ? ? -160.13 -16.67 137 14 ASP A 239 ? ? -144.36 -6.22 138 15 VAL A 2 ? ? 56.86 86.06 139 15 ALA A 29 ? ? -165.42 -162.24 140 15 ALA A 64 ? ? 58.11 -90.16 141 15 ALA A 186 ? ? 58.36 86.78 142 15 LEU A 188 ? ? -95.87 -151.66 143 15 HIS A 223 ? ? 61.88 -176.09 144 15 LEU A 227 ? ? -91.22 -60.27 145 15 ALA A 228 ? ? 56.19 178.45 146 15 ASP A 233 ? ? 62.51 107.84 147 15 ALA A 238 ? ? -149.10 -27.10 148 15 HIS A 243 ? ? -160.90 -45.85 149 15 HIS A 245 ? ? 57.79 84.85 150 16 VAL A 2 ? ? -175.10 -34.78 151 16 TRP A 60 ? ? -67.77 80.13 152 16 ALA A 64 ? ? 59.90 -85.65 153 16 ALA A 186 ? ? 55.61 87.18 154 16 LEU A 188 ? ? -96.85 -155.07 155 16 GLU A 241 ? ? 59.58 94.86 156 16 HIS A 246 ? ? -60.02 -71.98 157 17 VAL A 2 ? ? -132.04 -34.15 158 17 ALA A 29 ? ? -162.46 -78.51 159 17 ALA A 64 ? ? 57.38 -88.95 160 17 PHE A 113 ? ? -52.77 -71.34 161 17 SER A 150 ? ? -69.71 0.72 162 17 ALA A 186 ? ? 52.22 89.56 163 17 LEU A 188 ? ? -93.27 -93.93 164 17 HIS A 223 ? ? 62.43 -179.31 165 17 ALA A 228 ? ? 52.70 92.98 166 17 THR A 232 ? ? -143.47 -55.94 167 17 ALA A 238 ? ? 55.32 88.54 168 17 HIS A 244 ? ? 59.14 95.10 169 18 SER A 31 ? ? 62.49 -89.46 170 18 ALA A 64 ? ? 58.71 -88.38 171 18 LEU A 93 ? ? -67.71 -176.40 172 18 ILE A 121 ? ? 73.73 -46.94 173 18 ALA A 186 ? ? 59.34 82.25 174 18 THR A 234 ? ? 47.45 83.16 175 18 GLU A 241 ? ? -147.72 -49.50 176 19 TRP A 60 ? ? -66.20 89.46 177 19 ALA A 64 ? ? 59.56 -87.43 178 19 PRO A 183 ? ? -58.54 -4.75 179 19 ALA A 186 ? ? 51.62 88.88 180 19 LEU A 188 ? ? -97.36 -94.30 181 19 ASP A 233 ? ? -156.22 -52.98 182 19 ALA A 238 ? ? -136.89 -64.05 183 19 HIS A 243 ? ? -137.10 -71.87 184 19 HIS A 244 ? ? 58.26 -178.49 185 20 VAL A 2 ? ? 45.02 23.33 186 20 ALA A 29 ? ? -167.72 -71.42 187 20 ALA A 64 ? ? 58.72 -85.82 188 20 ALA A 186 ? ? 58.92 83.35 189 20 LEU A 188 ? ? -79.79 -164.59 190 20 HIS A 223 ? ? 36.92 81.90 191 20 ALA A 228 ? ? -152.32 -0.67 192 20 ASP A 239 ? ? 64.17 157.95 193 20 LEU A 240 ? ? -103.38 -62.45 194 20 HIS A 242 ? ? -100.17 -60.83 195 20 HIS A 245 ? ? -153.67 -57.27 196 21 ALA A 29 ? ? -164.69 -83.65 197 21 SER A 31 ? ? -145.84 -44.80 198 21 TRP A 60 ? ? -65.36 99.21 199 21 ALA A 64 ? ? 59.96 -85.49 200 21 ALA A 186 ? ? 55.14 87.28 201 21 LEU A 188 ? ? -106.90 -154.14 202 21 HIS A 223 ? ? 60.59 -179.04 203 21 ALA A 228 ? ? 51.92 -165.65 204 21 ALA A 238 ? ? -126.99 -64.03 205 21 HIS A 244 ? ? -58.72 96.63 206 21 HIS A 245 ? ? -122.88 -168.83 207 21 HIS A 246 ? ? -160.53 -51.04 208 22 VAL A 2 ? ? -142.85 -50.43 209 22 ALA A 29 ? ? -69.80 -174.68 210 22 ALA A 64 ? ? 58.19 -87.04 211 22 PRO A 182 ? ? -45.01 178.04 212 22 PRO A 183 ? ? -53.68 8.27 213 22 ALA A 186 ? ? 43.85 79.01 214 22 LEU A 188 ? ? -114.95 -166.45 215 22 SER A 226 ? ? 60.71 -85.95 216 22 ALA A 228 ? ? 52.49 -165.85 217 22 ASP A 233 ? ? 58.23 90.54 218 22 ASP A 239 ? ? 61.05 177.50 219 22 HIS A 243 ? ? -156.44 -40.35 220 22 HIS A 245 ? ? 57.95 -170.64 221 22 HIS A 246 ? ? -155.37 -22.80 222 23 VAL A 2 ? ? -134.57 -31.52 223 23 SER A 31 ? ? -138.00 -56.71 224 23 ALA A 64 ? ? 58.88 -90.08 225 23 PRO A 182 ? ? -48.25 176.98 226 23 PRO A 183 ? ? -59.95 16.03 227 23 VAL A 185 ? ? -148.94 -35.63 228 23 ALA A 186 ? ? 66.82 77.77 229 23 LEU A 188 ? ? -111.28 -166.36 230 23 HIS A 223 ? ? 59.71 100.32 231 23 HIS A 242 ? ? 58.04 18.18 232 23 HIS A 244 ? ? 60.13 176.70 233 24 ALA A 29 ? ? -161.12 -80.91 234 24 SER A 31 ? ? -136.78 -37.70 235 24 ALA A 64 ? ? 59.53 -86.85 236 24 PHE A 113 ? ? -52.79 -75.89 237 24 ALA A 186 ? ? -63.38 85.27 238 24 LEU A 188 ? ? -94.98 -157.48 239 24 LEU A 227 ? ? -126.03 -60.35 240 24 ALA A 228 ? ? 54.28 -168.90 241 24 THR A 232 ? ? -144.71 -48.13 242 24 ALA A 236 ? ? 61.68 103.15 243 24 ASP A 239 ? ? -163.08 -71.23 244 24 LEU A 240 ? ? 56.41 17.23 245 24 GLU A 241 ? ? -87.63 -71.14 246 24 HIS A 242 ? ? 57.06 91.51 247 24 HIS A 245 ? ? -150.51 -60.71 248 24 HIS A 246 ? ? -130.62 -62.96 249 25 VAL A 2 ? ? -140.65 10.93 250 25 SER A 31 ? ? -139.30 -33.85 251 25 ALA A 64 ? ? 57.24 -88.10 252 25 ALA A 186 ? ? 57.12 85.63 253 25 LEU A 188 ? ? -101.41 -159.81 254 25 HIS A 223 ? ? 61.40 101.60 255 25 ALA A 228 ? ? 52.35 85.16 256 25 GLU A 241 ? ? -101.72 -72.93 257 25 HIS A 242 ? ? 60.84 107.60 258 25 HIS A 244 ? ? -149.40 -24.34 259 25 HIS A 246 ? ? -143.55 -41.76 260 26 VAL A 2 ? ? -170.91 -38.18 261 26 SER A 31 ? ? -138.25 -45.49 262 26 ALA A 64 ? ? 58.48 -86.71 263 26 ALA A 186 ? ? 58.23 82.79 264 26 LEU A 240 ? ? -149.21 15.48 265 27 VAL A 2 ? ? -170.37 -37.02 266 27 ALA A 29 ? ? -168.19 -74.51 267 27 SER A 31 ? ? -101.20 -62.34 268 27 ALA A 64 ? ? 59.67 -85.99 269 27 SER A 150 ? ? -69.12 0.00 270 27 ALA A 186 ? ? 55.13 86.72 271 27 THR A 234 ? ? 58.29 88.04 272 27 HIS A 243 ? ? -141.72 -9.24 273 27 HIS A 244 ? ? 62.74 -82.57 274 28 VAL A 2 ? ? -165.67 101.86 275 28 ALA A 29 ? ? -165.20 -168.22 276 28 TRP A 60 ? ? -69.43 83.03 277 28 ALA A 64 ? ? 57.38 -88.93 278 28 PHE A 113 ? ? -52.25 -71.77 279 28 ALA A 186 ? ? 56.66 85.69 280 28 LEU A 188 ? ? -90.23 -154.48 281 28 HIS A 223 ? ? 62.15 168.58 282 28 ASP A 233 ? ? 59.64 98.45 283 28 ALA A 236 ? ? -163.70 108.39 284 28 ASP A 239 ? ? 60.14 103.32 285 28 LEU A 240 ? ? -142.46 -27.61 286 28 HIS A 246 ? ? 57.65 94.17 287 29 SER A 31 ? ? -158.80 -25.72 288 29 ALA A 64 ? ? 55.97 -88.70 289 29 PHE A 113 ? ? -50.66 -70.92 290 29 ALA A 186 ? ? 53.02 87.31 291 29 LEU A 188 ? ? -94.84 -89.45 292 29 GLU A 225 ? ? 58.53 99.64 293 29 ALA A 228 ? ? 50.76 91.07 294 29 ALA A 238 ? ? 60.13 -178.94 295 29 HIS A 243 ? ? -148.71 -11.56 296 29 HIS A 245 ? ? 58.81 -176.11 297 30 SER A 31 ? ? -134.06 -48.72 298 30 ALA A 64 ? ? 60.58 -86.15 299 30 PHE A 113 ? ? -51.02 -70.03 300 30 ALA A 186 ? ? 55.51 88.75 301 30 HIS A 223 ? ? -35.06 147.65 302 30 SER A 226 ? ? 57.74 -171.70 303 30 ALA A 238 ? ? 57.83 -170.37 304 30 GLU A 241 ? ? 65.27 144.13 305 30 HIS A 243 ? ? -142.78 -50.25 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name RETINAL _pdbx_entity_nonpoly.comp_id RET #