HEADER HYDROLASE 26-JAN-10 2KTA TITLE SOLUTION NMR STRUCTURE OF A DOMAIN OF PROTEIN A6KY75 FROM BACTEROIDES TITLE 2 VULGATUS, NORTHEAST STRUCTURAL GENOMICS TARGET BVR106A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 627-693; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_0683, BVU_1551; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS PSI, NESG, GFT NMR, ATP-BINDING, NUCLEOTIDE-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,D.K.SUKUMARAN,B.SATHYAMOORTHY,R.L.BELOTE,C.CICCOSANTI, AUTHOR 2 K.HAMILTON,T.B.ACTON,R.XIAO,G.V.T.SWAPNA,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 26-FEB-20 2KTA 1 REMARK SEQADV REVDAT 2 07-MAR-12 2KTA 1 AUTHOR JRNL VERSN REVDAT 1 16-JUN-10 2KTA 0 JRNL AUTH J.L.MILLS,D.K.SUKUMARAN,B.SATHYAMOORTHY,R.L.BELOTE, JRNL AUTH 2 C.CICCOSANTI,K.HAMILTON,T.B.ACTON,R.XIAO,G.V.T.SWAPNA, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF A DOMAIN OF PROTEIN A6KY75 FROM JRNL TITL 2 BACTEROIDES VULGATUS, NORTHEAST STRUCTURAL GENOMICS TARGET JRNL TITL 3 BVR106A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS, MOLMOL, PSVS REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), KORADI, BILLETER AND REMARK 3 WUTHRICH (MOLMOL), BHATTACHARYA AND MONTELIONE REMARK 3 (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101546. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 235 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11 MM [U-99% 13C; U-99% 15N] REMARK 210 BVR106A, 10 V/V [U-2H] D2O, 90 V/ REMARK 210 V H2O, 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 50 UM DSS, 0.02 W/V REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 (4,3)D GFT CABCA(CO)NH; (4,3)D REMARK 210 GFT HNCABCA; (4,3)D GFT REMARK 210 HABCAB(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 SIMULTANEOUS NOESY; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, AUTOASSIGN, CSI, TALOS, REMARK 210 CYANA, MOLMOL, PROSA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG21 VAL A 20 H ARG A 25 1.29 REMARK 500 HH22 ARG A 45 OE1 GLU A 68 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -163.20 -114.58 REMARK 500 1 ASN A 4 -164.21 59.98 REMARK 500 1 GLN A 6 37.77 -97.92 REMARK 500 1 ARG A 24 92.03 60.21 REMARK 500 1 ARG A 25 161.64 67.59 REMARK 500 1 SER A 29 81.79 65.38 REMARK 500 1 SER A 66 -179.47 65.18 REMARK 500 1 HIS A 71 88.29 -172.32 REMARK 500 2 ASN A 2 37.70 -152.70 REMARK 500 2 GLN A 3 104.46 -59.42 REMARK 500 2 LYS A 22 -64.48 -97.76 REMARK 500 2 TRP A 65 32.02 -92.18 REMARK 500 2 SER A 66 -47.42 74.61 REMARK 500 2 GLU A 68 -84.67 -107.45 REMARK 500 2 HIS A 70 58.97 -98.35 REMARK 500 2 HIS A 73 -85.01 168.79 REMARK 500 3 ASN A 2 -75.83 68.20 REMARK 500 3 ARG A 24 93.45 64.16 REMARK 500 3 ARG A 25 -174.69 65.92 REMARK 500 3 GLU A 31 -158.38 56.30 REMARK 500 3 SER A 66 -177.71 64.68 REMARK 500 3 HIS A 69 -51.16 -136.81 REMARK 500 4 GLN A 3 82.86 -165.59 REMARK 500 4 GLN A 6 146.30 67.58 REMARK 500 4 LYS A 22 -61.58 -91.26 REMARK 500 4 ARG A 24 -0.59 68.43 REMARK 500 4 GLU A 31 159.99 66.01 REMARK 500 4 SER A 66 168.76 72.24 REMARK 500 5 LEU A 5 98.47 74.83 REMARK 500 5 ARG A 24 98.50 65.85 REMARK 500 5 ARG A 25 163.40 71.29 REMARK 500 6 ARG A 24 93.95 61.39 REMARK 500 6 ARG A 25 -169.57 58.73 REMARK 500 6 LYS A 28 81.26 -175.07 REMARK 500 6 SER A 66 -147.95 59.82 REMARK 500 6 GLU A 68 72.12 63.19 REMARK 500 7 ARG A 24 111.53 70.72 REMARK 500 7 ARG A 25 -178.25 71.55 REMARK 500 7 SER A 29 175.86 69.31 REMARK 500 7 HIS A 70 -168.09 -109.85 REMARK 500 8 SER A 29 -159.91 65.12 REMARK 500 8 THR A 30 5.16 59.93 REMARK 500 8 SER A 66 120.40 65.33 REMARK 500 9 GLN A 3 50.72 -98.99 REMARK 500 9 LEU A 5 -177.53 63.40 REMARK 500 9 GLN A 6 90.89 63.80 REMARK 500 9 ARG A 24 99.79 64.55 REMARK 500 9 ARG A 25 172.16 67.28 REMARK 500 9 PRO A 27 91.97 -62.38 REMARK 500 9 LYS A 28 -74.26 63.96 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16692 RELATED DB: BMRB REMARK 900 RELATED ID: BVR106A RELATED DB: TARGETDB DBREF 2KTA A 2 66 UNP A6KY75 A6KY75_BACV8 627 691 SEQADV 2KTA MET A 1 UNP A6KY75 INITIATING METHIONINE SEQADV 2KTA LEU A 67 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA GLU A 68 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 69 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 70 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 71 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 72 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 73 UNP A6KY75 EXPRESSION TAG SEQADV 2KTA HIS A 74 UNP A6KY75 EXPRESSION TAG SEQRES 1 A 74 MET ASN GLN ASN LEU GLN GLY GLU TRP MET LYS ASN TYR SEQRES 2 A 74 GLU GLU LEU LYS SER PHE VAL ARG LYS TYR ARG ARG PHE SEQRES 3 A 74 PRO LYS SER THR GLU GLY ASN LEU GLY GLY TRP CYS HIS SEQRES 4 A 74 THR GLN ARG LYS MET ARG LYS GLN GLY LYS LEU PRO ASN SEQRES 5 A 74 ASP ARG ARG LEU LEU LEU ASP LYS ILE GLY PHE VAL TRP SEQRES 6 A 74 SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLN A 6 ARG A 24 1 19 HELIX 2 2 GLY A 32 GLY A 48 1 17 HELIX 3 3 PRO A 51 GLY A 62 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1