HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JAN-10 2KTE TITLE THE SOLUTION STRUCTURE OF BACILLUS SUBTILIS, YNDB, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORITUM TARGET SR211 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YNDB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YNDB, BSU17730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: MVK KEYWDS AHSA1, LIPID BINDING, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR K.A.MERCIER,G.A.MUELLER,R.POWERS,T.B.ACTON,M.CIANO,C.HO,J.LUI,L.MA, AUTHOR 2 B.ROST,R.ROSSI,G.T.MONTELIONE,R.XIAO,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 01-MAY-24 2KTE 1 REMARK SEQADV REVDAT 4 14-FEB-18 2KTE 1 JRNL REVDAT 3 25-AUG-10 2KTE 1 JRNL REVDAT 2 18-AUG-10 2KTE 1 TITLE REVDAT 1 16-JUN-10 2KTE 0 JRNL AUTH J.L.STARK,K.A.MERCIER,G.A.MUELLER,T.B.ACTON,R.XIAO, JRNL AUTH 2 G.T.MONTELIONE,R.POWERS JRNL TITL SOLUTION STRUCTURE AND FUNCTION OF YNDB, AN AHSA1 PROTEIN JRNL TITL 2 FROM BACILLUS SUBTILIS. JRNL REF PROTEINS V. 78 3328 2010 JRNL REFN ESSN 1097-0134 JRNL PMID 20818668 JRNL DOI 10.1002/PROT.22840 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101550. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.105 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 SR211, 20 MM MES, 5 % D2O, 0.02 % REMARK 210 SODIUM AZIDE, 10 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRDRAW, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 64 OD2 ASP A 79 1.58 REMARK 500 HZ2 LYS A 140 OE1 GLU A 144 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 GLU A 110 CD GLU A 110 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 PRO A 71 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 4 PRO A 71 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 16 PRO A 71 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 18 PRO A 71 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 6 78.95 63.95 REMARK 500 1 ASN A 7 -75.49 -114.82 REMARK 500 1 LEU A 9 90.24 67.95 REMARK 500 1 PRO A 10 -159.84 -88.32 REMARK 500 1 GLU A 19 25.09 -79.99 REMARK 500 1 MET A 40 86.23 69.09 REMARK 500 1 LEU A 54 -50.22 -146.31 REMARK 500 1 PRO A 57 106.30 -55.47 REMARK 500 1 PRO A 71 42.99 5.89 REMARK 500 1 THR A 72 -39.13 -132.76 REMARK 500 1 GLU A 81 -37.82 83.68 REMARK 500 1 GLU A 94 -10.03 84.58 REMARK 500 1 LYS A 106 -156.55 -177.18 REMARK 500 1 PRO A 108 92.46 -63.70 REMARK 500 1 LYS A 118 152.84 179.64 REMARK 500 1 ASN A 135 -70.40 -57.81 REMARK 500 1 GLU A 144 -137.63 -150.76 REMARK 500 1 LEU A 145 -66.21 -142.33 REMARK 500 1 HIS A 147 -81.41 -159.27 REMARK 500 2 PRO A 10 -157.03 -99.78 REMARK 500 2 LYS A 37 -47.74 69.36 REMARK 500 2 MET A 40 -72.34 -87.40 REMARK 500 2 LEU A 54 42.15 -78.46 REMARK 500 2 SER A 56 77.90 55.92 REMARK 500 2 PRO A 71 48.71 0.53 REMARK 500 2 THR A 72 -45.24 -146.58 REMARK 500 2 TRP A 83 -164.85 70.65 REMARK 500 2 GLU A 94 -42.82 -156.74 REMARK 500 2 LYS A 106 -75.33 -179.27 REMARK 500 2 GLU A 107 141.88 176.03 REMARK 500 2 GLU A 117 -164.47 -109.29 REMARK 500 2 SER A 119 -68.22 -126.72 REMARK 500 2 GLU A 144 105.38 -171.71 REMARK 500 3 ALA A 2 -39.18 68.52 REMARK 500 3 ASN A 4 35.90 -86.46 REMARK 500 3 ASN A 7 -27.64 76.70 REMARK 500 3 PRO A 10 -159.93 -95.97 REMARK 500 3 LYS A 37 -57.74 74.70 REMARK 500 3 PRO A 41 96.71 -61.71 REMARK 500 3 PRO A 71 48.75 2.60 REMARK 500 3 THR A 72 -36.87 -142.72 REMARK 500 3 THR A 80 94.81 -66.67 REMARK 500 3 GLU A 94 -39.80 167.65 REMARK 500 3 LYS A 106 110.86 170.14 REMARK 500 3 GLU A 107 124.10 176.03 REMARK 500 3 PRO A 108 41.06 -92.78 REMARK 500 3 ASN A 116 -19.83 76.06 REMARK 500 3 GLU A 143 -70.47 -85.73 REMARK 500 4 GLU A 6 60.32 36.27 REMARK 500 4 LEU A 9 78.38 54.16 REMARK 500 REMARK 500 THIS ENTRY HAS 276 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 137 0.07 SIDE CHAIN REMARK 500 12 ARG A 123 0.08 SIDE CHAIN REMARK 500 12 ARG A 137 0.09 SIDE CHAIN REMARK 500 12 ARG A 139 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16043 RELATED DB: BMRB REMARK 900 RELATED ID: SR211 RELATED DB: TARGETDB DBREF 2KTE A 1 144 UNP O31806 YNDB_BACSU 1 144 SEQADV 2KTE LEU A 145 UNP O31806 EXPRESSION TAG SEQADV 2KTE GLU A 146 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 147 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 148 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 149 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 150 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 151 UNP O31806 EXPRESSION TAG SEQADV 2KTE HIS A 152 UNP O31806 EXPRESSION TAG SEQRES 1 A 152 MET ALA GLN ASN ASN GLU ASN ALA LEU PRO ASP ILE THR SEQRES 2 A 152 LYS SER ILE THR LEU GLU ALA PRO ILE GLN LYS VAL TRP SEQRES 3 A 152 GLU THR VAL SER THR SER GLU GLY ILE ALA LYS TRP PHE SEQRES 4 A 152 MET PRO ASN ASP PHE GLN LEU LYS GLU GLY GLN GLU PHE SEQRES 5 A 152 HIS LEU GLN SER PRO PHE GLY PRO SER PRO CYS LYS VAL SEQRES 6 A 152 LEU ALA VAL GLN ALA PRO THR GLU LEU SER PHE GLU TRP SEQRES 7 A 152 ASP THR GLU GLY TRP VAL VAL THR PHE GLN LEU GLU ASP SEQRES 8 A 152 LEU GLY GLU LYS THR GLY PHE THR LEU ILE HIS SER GLY SEQRES 9 A 152 TRP LYS GLU PRO ASN GLU VAL ILE GLY LYS ALA ASN GLU SEQRES 10 A 152 LYS SER SER VAL VAL ARG GLY LYS MET ASP GLY GLY TRP SEQRES 11 A 152 THR GLY ILE VAL ASN GLU ARG LEU ARG LYS ALA VAL GLU SEQRES 12 A 152 GLU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 21 VAL A 29 1 9 HELIX 2 2 THR A 31 LYS A 37 1 7 HELIX 3 3 SER A 119 GLU A 144 1 26 SHEET 1 A 5 ILE A 12 LEU A 18 0 SHEET 2 A 5 THR A 96 GLY A 104 -1 O THR A 96 N LEU A 18 SHEET 3 A 5 TRP A 83 ASP A 91 -1 N GLU A 90 O GLY A 97 SHEET 4 A 5 GLU A 73 TRP A 78 -1 N TRP A 78 O TRP A 83 SHEET 5 A 5 CYS A 63 GLN A 69 -1 N LYS A 64 O GLU A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1